Wall clock time and date at job start Tue Mar 31 2020 16:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53135 * 1 3 3 C 1.54471 * 107.34534 * 2 1 4 4 C 1.52715 * 109.87558 * 116.77143 * 2 1 3 5 5 N 1.46608 * 109.85471 * 77.51421 * 4 2 1 6 6 C 1.34787 * 120.99734 * 235.43936 * 5 4 2 7 7 O 1.21580 * 120.00068 * 7.51226 * 6 5 4 8 8 N 1.34772 * 120.00154 * 187.51672 * 6 5 4 9 9 C 1.39247 * 120.00523 * 172.50621 * 8 6 5 10 10 C 1.39480 * 119.82865 * 38.28563 * 9 8 6 11 11 C 1.36376 * 120.16637 * 180.21418 * 10 9 8 12 12 C 1.40874 * 119.82819 * 359.52487 * 11 10 9 13 13 C 1.41156 * 120.16431 * 180.27430 * 12 11 10 14 14 H 1.07997 * 120.00112 * 147.57082 * 13 12 11 15 15 C 1.39899 * 119.99770 * 327.56853 * 13 12 11 16 16 N 1.30880 * 120.00217 * 358.25594 * 15 13 12 17 17 Si 1.86796 * 119.99772 * 178.25889 * 15 13 12 18 18 H 1.48505 * 109.47452 * 89.99913 * 17 15 13 19 19 H 1.48496 * 109.47261 * 209.99930 * 17 15 13 20 20 H 1.48501 * 109.47175 * 329.99787 * 17 15 13 21 21 C 1.40864 * 119.67090 * 0.25058 * 12 11 10 22 22 C 1.36379 * 119.83020 * 0.02562 * 21 12 11 23 23 C 1.46617 * 118.00812 * 56.13463 * 5 4 2 24 24 C 1.52724 * 109.78621 * 303.70631 * 23 5 4 25 25 C 1.53120 * 109.87689 * 282.82575 * 24 23 5 26 26 C 1.54456 * 107.65720 * 166.19942 * 24 23 5 27 27 C 1.51746 * 111.26265 * 242.01936 * 2 1 3 28 28 H 1.08998 * 109.47193 * 314.17867 * 1 2 3 29 29 H 1.08999 * 109.46781 * 74.17485 * 1 2 3 30 30 H 1.08992 * 109.47291 * 194.17223 * 1 2 3 31 31 H 1.09000 * 109.47330 * 178.23021 * 3 2 1 32 32 H 1.09002 * 109.47600 * 298.22971 * 3 2 1 33 33 H 1.09003 * 109.47307 * 58.23122 * 3 2 1 34 34 H 1.09254 * 109.57710 * 317.24240 * 4 2 1 35 35 H 1.09245 * 109.59704 * 197.84239 * 4 2 1 36 36 H 0.97005 * 120.00376 * 352.50031 * 8 6 5 37 37 H 1.07993 * 119.92096 * 0.02562 * 10 9 8 38 38 H 1.07998 * 120.08744 * 179.80015 * 11 10 9 39 39 H 0.96999 * 119.99882 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.08512 * 180.02562 * 21 12 11 41 41 H 1.07992 * 119.91690 * 179.97438 * 22 21 12 42 42 H 1.09237 * 109.47451 * 64.04792 * 23 5 4 43 43 H 1.09231 * 109.47586 * 183.34964 * 23 5 4 44 44 H 1.09003 * 109.47315 * 186.57605 * 25 24 23 45 45 H 1.08994 * 109.47326 * 306.58183 * 25 24 23 46 46 H 1.09001 * 109.47014 * 66.58525 * 25 24 23 47 47 H 1.09006 * 109.47523 * 298.36071 * 26 24 23 48 48 H 1.08997 * 109.46913 * 58.35767 * 26 24 23 49 49 H 1.09003 * 109.47332 * 178.35716 * 26 24 23 50 50 H 1.10289 * 108.54894 * 43.68922 * 27 2 1 51 51 H 1.10291 * 108.52575 * 158.30566 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9919 1.4745 0.0000 4 6 2.0505 -0.6469 1.2822 5 7 1.9395 -2.1055 1.1844 6 6 1.2681 -2.8144 2.1136 7 8 0.6294 -2.2387 2.9731 8 7 1.3048 -4.1614 2.0900 9 6 0.7441 -4.8917 3.1346 10 6 -0.4431 -4.4587 3.7249 11 6 -0.9959 -5.1663 4.7513 12 6 -0.3701 -6.3427 5.2084 13 6 -0.9393 -7.0837 6.2665 14 1 -0.8307 -8.1579 6.2930 15 6 -1.6439 -6.4266 7.2808 16 7 -1.7463 -5.1219 7.2670 17 14 -2.4385 -7.4114 8.6549 18 1 -1.4726 -7.5720 9.7714 19 1 -3.6447 -6.6959 9.1430 20 1 -2.8300 -8.7491 8.1427 21 6 0.8261 -6.7762 4.6040 22 6 1.3701 -6.0550 3.5823 23 6 2.5938 -2.7715 0.0539 24 6 2.0845 -2.1810 -1.2593 25 6 0.6933 -2.7370 -1.5753 26 6 3.0346 -2.6496 -2.3833 27 6 2.0817 -0.6635 -1.2489 28 1 -0.3633 0.7162 0.7370 29 1 -0.3633 0.2803 -0.9887 30 1 -0.3633 -0.9963 0.2516 31 1 3.0807 1.5151 0.0317 32 1 1.6362 1.9663 -0.9054 33 1 1.5837 1.9826 0.8737 34 1 1.4642 -0.2938 2.1338 35 1 3.0964 -0.3706 1.4346 36 1 1.7218 -4.6223 1.3452 37 1 -0.9241 -3.5592 3.3704 38 1 -1.9135 -4.8280 5.2096 39 1 -2.2352 -4.6663 7.9701 40 1 1.3113 -7.6773 4.9488 41 1 2.2874 -6.3858 3.1182 42 1 3.6747 -2.6305 0.1241 43 1 2.3738 -3.8410 0.0844 44 1 0.3856 -2.4043 -2.5667 45 1 0.7232 -3.8263 -1.5506 46 1 -0.0193 -2.3761 -0.8337 47 1 4.0392 -2.2728 -2.1906 48 1 3.0544 -3.7390 -2.4116 49 1 2.6808 -2.2676 -3.3409 50 1 1.5043 -0.3077 -2.1186 51 1 3.1143 -0.3100 -1.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000467095066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:49 Heat of formation + Delta-G solvation = -17.439159 kcal Electronic energy + Delta-G solvation = -29311.915494 eV Core-core repulsion = 25596.420598 eV Total energy + Delta-G solvation = -3715.494896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71867 -38.84877 -37.15595 -35.43468 -34.28188 -33.96885 -32.68008 -29.42833 -28.90790 -27.97333 -26.93599 -26.89451 -26.70526 -25.87459 -24.32233 -21.31908 -20.97214 -20.17932 -19.49828 -18.20233 -17.85760 -17.21993 -16.44487 -15.54733 -15.33292 -15.06190 -14.69508 -14.63314 -14.30073 -14.08385 -13.89091 -13.57316 -13.48324 -12.96030 -12.67042 -12.63200 -12.31373 -12.24066 -12.17705 -12.07600 -11.97914 -11.89862 -11.74111 -11.63662 -11.36192 -11.13691 -11.09504 -10.94732 -10.87816 -10.84678 -10.50960 -10.41258 -10.29079 -9.85304 -9.83392 -9.47578 -9.06833 -8.65423 -8.38557 -7.44083 -6.82885 -6.55228 -4.25646 2.73706 2.99834 3.12043 3.14321 3.17562 3.22066 3.71844 4.02595 4.20318 4.42672 4.51228 4.55554 4.71911 4.78254 4.84218 4.96342 5.12796 5.24354 5.37830 5.42276 5.46659 5.47842 5.52813 5.58222 5.63565 5.71115 5.74161 5.76070 5.79484 5.83486 5.88089 5.93954 6.02702 6.08583 6.18021 6.19667 6.20745 6.40170 6.46261 6.62178 6.90631 7.00820 7.12493 7.20609 7.36673 7.43157 7.71633 7.89393 8.10807 8.15389 8.35936 8.52007 8.74087 8.99307 9.01345 9.19620 10.36617 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.002732 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.823893 B =10244.808740 C =10951.139076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.143 4.143 4 C 0.140 3.860 5 N -0.628 5.628 6 C 0.701 3.299 7 O -0.571 6.571 8 N -0.670 5.670 9 C 0.022 3.978 10 C -0.090 4.090 11 C -0.144 4.144 12 C 0.101 3.899 13 C -0.463 4.463 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.806 5.806 17 Si 0.913 3.087 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.207 4.207 22 C -0.113 4.113 23 C 0.124 3.876 24 C -0.073 4.073 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.089 4.089 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.278 0.722 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 8.774 -18.071 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.201 4.201 4 C 0.017 3.983 5 N -0.366 5.366 6 C 0.404 3.596 7 O -0.448 6.448 8 N -0.318 5.318 9 C -0.071 4.071 10 C -0.110 4.110 11 C -0.164 4.164 12 C 0.098 3.902 13 C -0.494 4.494 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.433 5.433 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.227 4.227 22 C -0.134 4.134 23 C -0.001 4.001 24 C -0.074 4.074 25 C -0.201 4.201 26 C -0.202 4.202 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.485 9.399 -17.269 21.038 hybrid contribution 0.063 -0.566 0.221 0.611 sum 7.549 8.832 -17.048 20.631 Atomic orbital electron populations 1.21957 0.93952 1.02506 1.01076 1.20758 0.96437 0.95128 0.95123 1.22242 1.00892 0.94969 1.01981 1.21342 1.00613 0.78589 0.97784 1.46980 1.57019 1.06858 1.25746 1.15888 0.80127 0.81978 0.81616 1.90922 1.45468 1.69433 1.38946 1.42264 1.61725 1.03851 1.23929 1.17062 0.97101 0.96377 0.96515 1.20624 0.93774 0.98964 0.97662 1.21200 1.01346 0.97577 0.96313 1.17696 0.89684 0.92069 0.90712 1.19481 1.29469 0.94968 1.05445 0.90708 1.25887 0.94458 0.94983 0.99289 1.69808 1.33321 1.08414 1.31738 0.86243 0.78907 0.80377 0.80673 1.19647 1.20310 1.18740 1.20631 0.98249 1.02353 1.01458 1.20054 0.98219 0.96481 0.98629 1.21536 0.96768 0.96554 0.85193 1.20742 0.96385 0.95460 0.94793 1.22012 0.96053 1.00589 1.01492 1.22247 0.98748 1.01331 0.97857 1.21249 1.01175 0.93286 0.96907 0.92593 0.93097 0.92039 0.92722 0.92565 0.92280 0.88774 0.92308 0.77637 0.87592 0.85575 0.91110 0.88666 0.89381 0.91744 0.90635 0.92763 0.92689 0.91814 0.92613 0.92362 0.92451 0.92172 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.87 37.23 0.29 -1.23 16 2 C -0.07 -0.72 0.77 -154.45 -0.12 -0.84 16 3 C -0.14 -1.15 8.00 37.93 0.30 -0.85 16 4 C 0.14 1.74 5.07 -4.13 -0.02 1.72 16 5 N -0.63 -8.68 2.84 -179.16 -0.51 -9.19 16 6 C 0.70 13.14 8.14 -86.91 -0.71 12.44 16 7 O -0.57 -13.27 13.31 5.30 0.07 -13.20 16 8 N -0.67 -12.34 5.21 -14.10 -0.07 -12.41 16 9 C 0.02 0.50 6.27 -83.57 -0.52 -0.02 16 10 C -0.09 -2.30 8.62 -39.79 -0.34 -2.64 16 11 C -0.14 -3.95 8.60 -39.26 -0.34 -4.29 16 12 C 0.10 2.76 5.55 -106.80 -0.59 2.16 16 13 C -0.46 -12.55 9.04 -37.85 -0.34 -12.90 16 14 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 15 C 0.07 1.81 5.37 -17.34 -0.09 1.71 16 16 N -0.81 -21.92 10.66 55.55 0.59 -21.32 16 17 Si 0.91 19.40 29.56 -169.99 -5.02 14.38 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.21 -5.10 9.74 -39.26 -0.38 -5.48 16 22 C -0.11 -2.53 9.90 -39.79 -0.39 -2.93 16 23 C 0.12 1.28 5.04 -4.12 -0.02 1.26 16 24 C -0.07 -0.63 0.77 -154.46 -0.12 -0.75 16 25 C -0.14 -1.39 8.20 37.22 0.31 -1.08 16 26 C -0.14 -0.98 8.07 37.92 0.31 -0.67 16 27 C -0.09 -0.74 3.40 -28.00 -0.10 -0.84 16 28 H 0.05 0.63 7.96 -51.93 -0.41 0.22 16 29 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 30 H 0.06 0.83 6.11 -51.93 -0.32 0.51 16 31 H 0.05 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.09 1.41 6.92 -51.79 -0.36 1.05 16 35 H 0.06 0.65 8.01 -51.79 -0.42 0.24 16 36 H 0.39 5.75 6.34 -40.82 -0.26 5.49 16 37 H 0.11 2.75 6.35 -52.49 -0.33 2.42 16 38 H 0.13 3.61 6.16 -52.49 -0.32 3.29 16 39 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.06 0.60 8.04 -51.80 -0.42 0.18 16 43 H 0.08 0.76 5.48 -51.80 -0.28 0.47 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.52 8.04 -51.93 -0.42 0.10 16 46 H 0.06 0.75 5.56 -51.93 -0.29 0.46 16 47 H 0.05 0.35 8.05 -51.93 -0.42 -0.07 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.48 7.85 -51.19 -0.40 0.08 16 51 H 0.06 0.45 7.66 -51.19 -0.39 0.05 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -30.87 388.67 -10.34 -41.20 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.37 Total: 9.91 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.88 Total: -15.22 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.01 Total: -42.92 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.87 -10.34 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467095066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.765 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds