Wall clock time and date at job start Tue Mar 31 2020 16:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53135 * 1 3 3 C 1.54471 * 107.34534 * 2 1 4 4 C 1.52715 * 109.87558 * 116.77143 * 2 1 3 5 5 N 1.46608 * 109.85471 * 77.51421 * 4 2 1 6 6 C 1.34787 * 120.99734 * 235.43936 * 5 4 2 7 7 O 1.21580 * 120.00068 * 7.51226 * 6 5 4 8 8 N 1.34772 * 120.00154 * 187.51672 * 6 5 4 9 9 C 1.39247 * 120.00523 * 172.50621 * 8 6 5 10 10 C 1.39480 * 119.82865 * 38.28563 * 9 8 6 11 11 C 1.36376 * 120.16637 * 180.21418 * 10 9 8 12 12 C 1.40874 * 119.82819 * 359.52487 * 11 10 9 13 13 C 1.41156 * 120.16431 * 180.27430 * 12 11 10 14 14 H 1.07997 * 120.00112 * 147.57082 * 13 12 11 15 15 C 1.39899 * 119.99770 * 327.56853 * 13 12 11 16 16 N 1.30880 * 120.00217 * 358.25594 * 15 13 12 17 17 Si 1.86796 * 119.99772 * 178.25889 * 15 13 12 18 18 H 1.48505 * 109.47452 * 89.99913 * 17 15 13 19 19 H 1.48496 * 109.47261 * 209.99930 * 17 15 13 20 20 H 1.48501 * 109.47175 * 329.99787 * 17 15 13 21 21 C 1.40864 * 119.67090 * 0.25058 * 12 11 10 22 22 C 1.36379 * 119.83020 * 0.02562 * 21 12 11 23 23 C 1.46617 * 118.00812 * 56.13463 * 5 4 2 24 24 C 1.52724 * 109.78621 * 303.70631 * 23 5 4 25 25 C 1.53120 * 109.87689 * 282.82575 * 24 23 5 26 26 C 1.54456 * 107.65720 * 166.19942 * 24 23 5 27 27 C 1.51746 * 111.26265 * 242.01936 * 2 1 3 28 28 H 1.08998 * 109.47193 * 314.17867 * 1 2 3 29 29 H 1.08999 * 109.46781 * 74.17485 * 1 2 3 30 30 H 1.08992 * 109.47291 * 194.17223 * 1 2 3 31 31 H 1.09000 * 109.47330 * 178.23021 * 3 2 1 32 32 H 1.09002 * 109.47600 * 298.22971 * 3 2 1 33 33 H 1.09003 * 109.47307 * 58.23122 * 3 2 1 34 34 H 1.09254 * 109.57710 * 317.24240 * 4 2 1 35 35 H 1.09245 * 109.59704 * 197.84239 * 4 2 1 36 36 H 0.97005 * 120.00376 * 352.50031 * 8 6 5 37 37 H 1.07993 * 119.92096 * 0.02562 * 10 9 8 38 38 H 1.07998 * 120.08744 * 179.80015 * 11 10 9 39 39 H 0.96999 * 119.99882 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.08512 * 180.02562 * 21 12 11 41 41 H 1.07992 * 119.91690 * 179.97438 * 22 21 12 42 42 H 1.09237 * 109.47451 * 64.04792 * 23 5 4 43 43 H 1.09231 * 109.47586 * 183.34964 * 23 5 4 44 44 H 1.09003 * 109.47315 * 186.57605 * 25 24 23 45 45 H 1.08994 * 109.47326 * 306.58183 * 25 24 23 46 46 H 1.09001 * 109.47014 * 66.58525 * 25 24 23 47 47 H 1.09006 * 109.47523 * 298.36071 * 26 24 23 48 48 H 1.08997 * 109.46913 * 58.35767 * 26 24 23 49 49 H 1.09003 * 109.47332 * 178.35716 * 26 24 23 50 50 H 1.10289 * 108.54894 * 43.68922 * 27 2 1 51 51 H 1.10291 * 108.52575 * 158.30566 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9919 1.4745 0.0000 4 6 2.0505 -0.6469 1.2822 5 7 1.9395 -2.1055 1.1844 6 6 1.2681 -2.8144 2.1136 7 8 0.6294 -2.2387 2.9731 8 7 1.3048 -4.1614 2.0900 9 6 0.7441 -4.8917 3.1346 10 6 -0.4431 -4.4587 3.7249 11 6 -0.9959 -5.1663 4.7513 12 6 -0.3701 -6.3427 5.2084 13 6 -0.9393 -7.0837 6.2665 14 1 -0.8307 -8.1579 6.2930 15 6 -1.6439 -6.4266 7.2808 16 7 -1.7463 -5.1219 7.2670 17 14 -2.4385 -7.4114 8.6549 18 1 -1.4726 -7.5720 9.7714 19 1 -3.6447 -6.6959 9.1430 20 1 -2.8300 -8.7491 8.1427 21 6 0.8261 -6.7762 4.6040 22 6 1.3701 -6.0550 3.5823 23 6 2.5938 -2.7715 0.0539 24 6 2.0845 -2.1810 -1.2593 25 6 0.6933 -2.7370 -1.5753 26 6 3.0346 -2.6496 -2.3833 27 6 2.0817 -0.6635 -1.2489 28 1 -0.3633 0.7162 0.7370 29 1 -0.3633 0.2803 -0.9887 30 1 -0.3633 -0.9963 0.2516 31 1 3.0807 1.5151 0.0317 32 1 1.6362 1.9663 -0.9054 33 1 1.5837 1.9826 0.8737 34 1 1.4642 -0.2938 2.1338 35 1 3.0964 -0.3706 1.4346 36 1 1.7218 -4.6223 1.3452 37 1 -0.9241 -3.5592 3.3704 38 1 -1.9135 -4.8280 5.2096 39 1 -2.2352 -4.6663 7.9701 40 1 1.3113 -7.6773 4.9488 41 1 2.2874 -6.3858 3.1182 42 1 3.6747 -2.6305 0.1241 43 1 2.3738 -3.8410 0.0844 44 1 0.3856 -2.4043 -2.5667 45 1 0.7232 -3.8263 -1.5506 46 1 -0.0193 -2.3761 -0.8337 47 1 4.0392 -2.2728 -2.1906 48 1 3.0544 -3.7390 -2.4116 49 1 2.6808 -2.2676 -3.3409 50 1 1.5043 -0.3077 -2.1186 51 1 3.1143 -0.3100 -1.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000467095066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:48 Heat of formation + Delta-G solvation = -33.387554 kcal Electronic energy + Delta-G solvation = -29312.607068 eV Core-core repulsion = 25596.420598 eV Total energy + Delta-G solvation = -3716.186470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92532 -40.19211 -38.88318 -36.45204 -35.87988 -35.19729 -34.42027 -31.40385 -30.77311 -28.76535 -27.90239 -27.52816 -27.46805 -27.22038 -25.92592 -23.18327 -22.76202 -21.12303 -20.85093 -19.49491 -19.19412 -18.89556 -17.93823 -17.10640 -16.68712 -16.34028 -15.80830 -15.70134 -15.56516 -15.30192 -15.17756 -14.88367 -14.50746 -14.47692 -14.26630 -13.94555 -13.62345 -13.36381 -13.25460 -13.07694 -12.99803 -12.93363 -12.88634 -12.79709 -12.65881 -12.60162 -12.41718 -12.27619 -11.92564 -11.82831 -11.75465 -11.66880 -11.61587 -11.29919 -11.21106 -11.04533 -10.89900 -10.48605 -9.55905 -9.42481 -8.71369 -8.49635 -6.29619 0.88115 1.15553 1.38860 1.47922 1.53676 1.71642 2.18749 2.24752 2.83329 3.03569 3.57597 3.72430 3.76371 3.81257 3.91440 4.03382 4.20294 4.31117 4.44349 4.49742 4.50504 4.61044 4.67967 4.72115 4.72989 4.82111 4.87361 4.90252 4.92641 4.98861 5.01115 5.05575 5.09802 5.12340 5.14776 5.18716 5.28123 5.32276 5.33943 5.38120 5.43931 5.44619 5.47541 5.52708 5.64125 5.71711 5.84887 6.08825 6.15110 6.19236 6.38527 6.72878 6.97431 7.04541 7.05462 7.67587 8.44198 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.002732 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.823893 B =10244.808740 C =10951.139076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.138 4.138 4 C 0.136 3.864 5 N -0.616 5.616 6 C 0.696 3.304 7 O -0.625 6.625 8 N -0.660 5.660 9 C 0.037 3.963 10 C -0.104 4.104 11 C -0.167 4.167 12 C 0.068 3.932 13 C -0.495 4.495 14 H 0.081 0.919 15 C 0.022 3.978 16 N -0.846 5.846 17 Si 0.990 3.010 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.254 1.254 21 C -0.211 4.211 22 C -0.106 4.106 23 C 0.115 3.885 24 C -0.069 4.069 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.089 4.089 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.282 0.718 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 8.382 -20.462 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C -0.196 4.196 4 C 0.012 3.988 5 N -0.352 5.352 6 C 0.399 3.601 7 O -0.505 6.505 8 N -0.311 5.311 9 C -0.057 4.057 10 C -0.125 4.125 11 C -0.188 4.188 12 C 0.065 3.935 13 C -0.526 4.526 14 H 0.099 0.901 15 C -0.190 4.190 16 N -0.474 5.474 17 Si 0.811 3.189 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.178 1.178 21 C -0.231 4.231 22 C -0.126 4.126 23 C -0.008 4.008 24 C -0.070 4.070 25 C -0.201 4.201 26 C -0.195 4.195 27 C -0.126 4.126 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.228 9.013 -19.750 23.999 hybrid contribution -0.702 -0.336 0.799 1.115 sum 9.526 8.678 -18.952 22.918 Atomic orbital electron populations 1.21932 0.95418 1.00288 1.01546 1.20723 0.95136 0.96464 0.94548 1.22201 1.01797 0.93276 1.02307 1.21518 1.01295 0.77742 0.98201 1.46975 1.55530 1.07361 1.25324 1.16099 0.80084 0.81966 0.81992 1.90897 1.47759 1.70381 1.41492 1.42031 1.61527 1.03861 1.23654 1.17109 0.95705 0.96399 0.96492 1.20603 0.95268 0.98534 0.98056 1.21055 1.01287 0.98867 0.97572 1.18031 0.91203 0.92465 0.91763 1.19782 1.31131 0.95365 1.06312 0.90118 1.26860 0.94495 0.95896 1.01713 1.69933 1.34346 1.10251 1.32887 0.85082 0.77890 0.78845 0.77076 1.18830 1.19710 1.17773 1.20914 0.97405 1.03071 1.01693 1.20398 0.99214 0.95375 0.97632 1.21908 0.97781 0.96609 0.84481 1.20724 0.96130 0.95667 0.94511 1.22018 0.96254 1.00549 1.01328 1.22188 0.98616 1.01642 0.97063 1.21250 1.02460 0.92887 0.96019 0.93787 0.91388 0.95117 0.91217 0.91145 0.93220 0.92279 0.90201 0.75145 0.89155 0.88174 0.90775 0.86855 0.84846 0.89373 0.90301 0.91455 0.92778 0.94671 0.91384 0.92004 0.91591 0.91069 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 7.87 72.03 0.57 -2.45 16 2 C -0.07 -1.22 0.77 -52.14 -0.04 -1.26 16 3 C -0.14 -1.90 8.00 72.48 0.58 -1.32 16 4 C 0.14 3.29 5.07 86.26 0.44 3.73 16 5 N -0.62 -16.53 2.84 -839.01 -2.39 -18.92 16 6 C 0.70 26.51 8.14 179.05 1.46 27.96 16 7 O -0.62 -30.69 13.31 -3.97 -0.05 -30.74 16 8 N -0.66 -23.93 5.21 -316.78 -1.65 -25.58 16 9 C 0.04 1.69 6.27 38.56 0.24 1.93 16 10 C -0.10 -5.61 8.62 22.13 0.19 -5.42 16 11 C -0.17 -9.76 8.60 22.48 0.19 -9.57 16 12 C 0.07 3.83 5.55 -21.27 -0.12 3.71 16 13 C -0.50 -27.71 9.04 23.39 0.21 -27.50 16 14 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 15 C 0.02 1.17 5.37 85.24 0.46 1.62 16 16 N -0.85 -48.39 10.66 21.82 0.23 -48.16 16 17 Si 0.99 40.56 29.56 68.60 2.03 42.59 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 21 C -0.21 -10.33 9.74 22.48 0.22 -10.12 16 22 C -0.11 -4.57 9.90 22.13 0.22 -4.35 16 23 C 0.11 2.04 5.04 86.27 0.44 2.48 16 24 C -0.07 -0.99 0.77 -52.15 -0.04 -1.03 16 25 C -0.14 -2.53 8.20 72.02 0.59 -1.94 16 26 C -0.14 -1.26 8.07 72.48 0.58 -0.68 16 27 C -0.09 -1.19 3.40 29.77 0.10 -1.09 16 28 H 0.04 1.05 7.96 -2.39 -0.02 1.03 16 29 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 30 H 0.03 0.87 6.11 -2.39 -0.01 0.86 16 31 H 0.07 0.77 8.06 -2.39 -0.02 0.76 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 8.07 -2.39 -0.02 0.76 16 34 H 0.06 1.87 6.92 -2.25 -0.02 1.85 16 35 H 0.08 1.61 8.01 -2.26 -0.02 1.59 16 36 H 0.41 11.25 6.34 -92.70 -0.59 10.66 16 37 H 0.09 5.07 6.35 -2.91 -0.02 5.05 16 38 H 0.10 6.24 6.16 -2.91 -0.02 6.22 16 39 H 0.28 14.79 8.30 -92.71 -0.77 14.02 16 40 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.09 1.24 8.04 -2.26 -0.02 1.22 16 43 H 0.08 1.35 5.48 -2.26 -0.01 1.33 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 0.94 8.04 -2.39 -0.02 0.92 16 46 H 0.03 0.82 5.56 -2.39 -0.01 0.81 16 47 H 0.07 0.50 8.05 -2.38 -0.02 0.48 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.07 0.86 7.85 -1.70 -0.01 0.85 16 51 H 0.08 0.81 7.66 -1.69 -0.01 0.79 16 Total: -1.00 -72.86 388.67 4.81 -68.05 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.35 Total: 38.04 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 6.29 Total: -25.28 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.80 Total: -92.66 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -72.86 4.81 -68.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467095066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.665 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds