Wall clock time and date at job start Tue Mar 31 2020 16:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46987 * 2 1 4 4 C 1.38304 * 119.96505 * 94.85924 * 3 2 1 5 5 C 1.38266 * 120.13939 * 180.02562 * 4 3 2 6 6 C 1.38135 * 120.07178 * 359.74154 * 5 4 3 7 7 C 1.38851 * 119.92707 * 0.50802 * 6 5 4 8 8 N 1.39939 * 120.07111 * 179.76853 * 7 6 5 9 9 C 1.34777 * 119.99747 * 335.19332 * 8 7 6 10 10 O 1.21580 * 120.00205 * 354.34180 * 9 8 7 11 11 N 1.34778 * 119.99663 * 174.34169 * 9 8 7 12 12 C 1.46497 * 119.99740 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47260 * 270.00063 * 12 11 9 14 14 H 1.08001 * 119.99722 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99848 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00467 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46765 * 119.99917 * 17 15 13 20 20 H 1.48498 * 109.47129 * 239.99959 * 17 15 13 21 21 C 1.46493 * 120.00344 * 0.02562 * 11 9 8 22 22 C 1.53005 * 109.46920 * 269.99966 * 21 11 9 23 23 C 1.53000 * 117.49572 * 243.61851 * 22 21 11 24 24 C 1.53005 * 60.00182 * 252.50895 * 23 22 21 25 25 C 1.38089 * 119.96591 * 274.87825 * 3 2 1 26 26 C 1.50699 * 120.03383 * 0.02562 * 25 3 2 27 27 C 1.52995 * 109.47124 * 274.80420 * 26 25 3 28 28 H 1.09003 * 109.46891 * 184.99297 * 1 2 3 29 29 H 1.09006 * 109.47210 * 304.99134 * 1 2 3 30 30 H 1.08993 * 109.47429 * 64.99070 * 1 2 3 31 31 H 1.08999 * 109.47000 * 239.99956 * 2 1 3 32 32 H 1.08998 * 109.47120 * 119.99949 * 2 1 3 33 33 H 1.08000 * 119.92989 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.96154 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.03707 * 180.25930 * 6 5 4 36 36 H 0.96996 * 120.00056 * 155.19272 * 8 7 6 37 37 H 1.09004 * 109.47382 * 30.00423 * 12 11 9 38 38 H 1.08997 * 109.47232 * 150.00175 * 12 11 9 39 39 H 0.96998 * 119.99926 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47780 * 149.99782 * 21 11 9 41 41 H 1.09003 * 109.47193 * 29.99637 * 21 11 9 42 42 H 1.08992 * 115.54991 * 29.33043 * 22 21 11 43 43 H 1.08997 * 117.50428 * 359.97438 * 23 22 21 44 44 H 1.08998 * 117.49599 * 145.02188 * 23 22 21 45 45 H 1.08996 * 117.50216 * 252.51434 * 24 23 22 46 46 H 1.09002 * 117.49089 * 107.48682 * 24 23 22 47 47 H 1.08994 * 109.47145 * 34.80990 * 26 25 3 48 48 H 1.09006 * 109.46780 * 154.80588 * 26 25 3 49 49 H 1.08999 * 109.47157 * 184.98817 * 27 26 25 50 50 H 1.08994 * 109.47770 * 304.99497 * 27 26 25 51 51 H 1.09003 * 109.47333 * 64.99421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3582 2.0382 1.1939 5 6 2.8189 3.3419 1.1981 6 6 2.9601 4.0300 0.0087 7 6 2.6288 3.4146 -1.1911 8 7 2.7661 4.1106 -2.3974 9 6 2.7251 5.4577 -2.4066 10 8 2.4667 6.0650 -1.3856 11 7 2.9706 6.1315 -3.5477 12 6 2.9256 7.5958 -3.5579 13 6 1.5274 8.0531 -3.8853 14 1 0.7501 7.3257 -4.0671 15 6 1.2407 9.4000 -3.9526 16 7 2.1874 10.2858 -3.7316 17 14 -0.4922 9.9669 -4.3591 18 1 -1.3652 8.7831 -4.5632 19 1 -1.0214 10.7842 -3.2378 20 1 -0.4677 10.7841 -5.5988 21 6 3.2814 5.3998 -4.7782 22 6 4.7936 5.1894 -4.8783 23 6 5.5235 5.8547 -6.0468 24 6 5.3133 4.3392 -6.0394 25 6 2.1663 2.1050 -1.1920 26 6 1.8099 1.4317 -2.4923 27 6 3.0094 0.6257 -2.9947 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3634 0.5893 0.8419 30 1 -0.3634 0.4344 -0.9312 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2519 1.5013 2.1249 34 1 3.0722 3.8214 2.1321 35 1 3.3240 5.0468 0.0123 36 1 2.8907 3.6235 -3.2269 37 1 3.2115 7.9749 -2.5767 38 1 3.6174 7.9754 -4.3098 39 1 1.9856 11.2333 -3.7786 40 1 2.9365 5.9729 -5.6389 41 1 2.7802 4.4319 -4.7618 42 1 5.3225 5.1203 -3.9278 43 1 4.9265 6.4419 -6.7445 44 1 6.5330 6.2236 -5.8651 45 1 6.1843 3.7111 -5.8528 46 1 4.5778 3.9298 -6.7319 47 1 0.9632 0.7637 -2.3354 48 1 1.5445 2.1873 -3.2318 49 1 2.7829 0.2114 -3.9771 50 1 3.8803 1.2770 -3.0670 51 1 3.2195 -0.1857 -2.2978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487633545.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:35 Heat of formation + Delta-G solvation = 13.828901 kcal Electronic energy + Delta-G solvation = -29169.226957 eV Core-core repulsion = 25455.087946 eV Total energy + Delta-G solvation = -3714.139011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56567 -39.00613 -37.30921 -35.12075 -34.61706 -34.26531 -32.72841 -32.15611 -28.97374 -28.85986 -27.72567 -26.02624 -24.45813 -23.60334 -22.85312 -22.23982 -21.22535 -20.70877 -20.56180 -19.04828 -17.88334 -16.75201 -16.43873 -15.93149 -15.72354 -15.30579 -14.81969 -14.76639 -14.39682 -13.98834 -13.88595 -13.77174 -13.52936 -13.46377 -13.35415 -12.88419 -12.45191 -12.43244 -12.31789 -12.11820 -11.90311 -11.73395 -11.49755 -11.40730 -11.40179 -11.25789 -11.20747 -10.89939 -10.73535 -10.64873 -10.58325 -10.32460 -10.14660 -10.01628 -9.78975 -9.58965 -9.17162 -8.43343 -8.36165 -7.87622 -7.50128 -6.04159 -4.08581 1.56658 1.64724 3.18684 3.29759 3.37808 3.42340 3.68499 3.90239 4.13209 4.31788 4.47876 4.73195 4.83295 4.90353 4.93148 4.97188 5.02867 5.14698 5.24495 5.30257 5.31667 5.35544 5.39559 5.45655 5.54179 5.62778 5.64934 5.69146 5.70208 5.72703 5.76630 5.80256 5.93608 5.99300 6.02897 6.06639 6.10942 6.15897 6.22483 6.30201 6.40671 6.52807 6.68885 6.83397 6.89037 6.91055 7.37013 7.40035 7.50468 7.68117 7.93879 8.23135 8.56341 8.92302 9.22312 9.56846 11.03695 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.003763 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.208174 B = 7438.892136 C = 8769.241829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.062 4.062 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.191 3.809 8 N -0.691 5.691 9 C 0.697 3.303 10 O -0.564 6.564 11 N -0.602 5.602 12 C 0.262 3.738 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.143 3.857 22 C -0.170 4.170 23 C -0.171 4.171 24 C -0.182 4.182 25 C -0.125 4.125 26 C -0.086 4.086 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.401 0.599 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -21.217 0.829 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.063 4.063 4 C -0.169 4.169 5 C -0.118 4.118 6 C -0.156 4.156 7 C 0.094 3.906 8 N -0.339 5.339 9 C 0.399 3.601 10 O -0.440 6.440 11 N -0.336 5.336 12 C 0.143 3.857 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.018 3.982 22 C -0.189 4.189 23 C -0.208 4.208 24 C -0.219 4.219 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.205 4.205 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.239 0.761 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.728 -20.425 1.477 20.815 hybrid contribution -0.870 0.330 -0.650 1.135 sum 2.859 -20.095 0.827 20.314 Atomic orbital electron populations 1.21764 0.94964 1.01318 1.02452 1.20540 0.96046 0.92940 1.02535 1.19366 0.99194 0.95656 0.92083 1.20849 1.03503 0.95518 0.96997 1.20993 0.98982 0.94154 0.97690 1.21530 1.01361 1.01981 0.90751 1.17425 0.96625 0.90673 0.85921 1.43065 1.76104 1.06062 1.08639 1.15957 0.78728 0.80438 0.84936 1.90859 1.54359 1.67038 1.31764 1.47578 1.70656 1.09317 1.06035 1.19239 0.97067 0.70597 0.98832 1.21492 0.95447 0.91801 1.47780 0.92494 1.24907 0.97299 0.96508 0.95262 1.69938 1.32392 1.01440 1.49523 0.86469 0.84548 0.78659 0.77894 1.19869 1.20874 1.20989 1.20966 0.91503 0.96015 0.89691 1.22917 0.96811 1.04989 0.94211 1.22989 1.01763 0.94677 1.01374 1.22934 1.03132 0.94099 1.01755 1.19276 1.04558 0.93718 0.95233 1.20474 0.98702 0.99080 0.94037 1.21787 0.97969 1.00110 1.00656 0.92699 0.92474 0.92438 0.90897 0.91373 0.86717 0.86225 0.83345 0.76132 0.93766 0.94613 0.92789 0.89298 0.92185 0.87923 0.88363 0.89091 0.89125 0.88821 0.90527 0.91615 0.92459 0.92635 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.76 37.16 0.36 -0.94 16 2 C -0.08 -0.77 5.38 -27.88 -0.15 -0.92 16 3 C -0.06 -0.76 5.13 -104.65 -0.54 -1.30 16 4 C -0.15 -1.89 9.68 -39.55 -0.38 -2.27 16 5 C -0.10 -1.43 10.04 -39.61 -0.40 -1.83 16 6 C -0.14 -2.35 8.72 -39.39 -0.34 -2.69 16 7 C 0.19 3.12 6.41 -83.69 -0.54 2.58 16 8 N -0.69 -11.53 4.86 -14.22 -0.07 -11.60 16 9 C 0.70 14.85 8.08 -86.92 -0.70 14.14 16 10 O -0.56 -14.31 13.09 5.30 0.07 -14.24 16 11 N -0.60 -12.59 2.46 -180.80 -0.44 -13.03 16 12 C 0.26 6.75 5.16 -5.19 -0.03 6.72 16 13 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 C 0.14 2.27 5.50 -4.04 -0.02 2.25 16 22 C -0.17 -2.33 6.01 -90.61 -0.54 -2.88 16 23 C -0.17 -2.17 10.18 -26.73 -0.27 -2.44 16 24 C -0.18 -1.94 10.25 -26.73 -0.27 -2.22 16 25 C -0.12 -1.67 5.15 -104.43 -0.54 -2.21 16 26 C -0.09 -0.92 4.93 -27.89 -0.14 -1.06 16 27 C -0.15 -1.31 9.76 37.15 0.36 -0.95 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 6.73 -51.93 -0.35 0.19 16 31 H 0.07 0.61 5.59 -51.93 -0.29 0.32 16 32 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 33 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.15 2.96 5.79 -52.49 -0.30 2.66 16 36 H 0.40 5.58 4.98 -40.82 -0.20 5.37 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 1.47 7.81 -51.93 -0.41 1.07 16 41 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16 42 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.74 5.58 -51.93 -0.29 0.45 16 48 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.48 6.74 -51.93 -0.35 0.13 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -32.29 404.71 -11.47 -43.76 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.28 Total: 7.25 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.56 Total: -9.49 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.22 Total: -50.29 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.07 Total: -14.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.29 -11.47 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487633545.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.589 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds