Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46987 * 2 1 4 4 C 1.38304 * 119.96505 * 94.85924 * 3 2 1 5 5 C 1.38266 * 120.13939 * 180.02562 * 4 3 2 6 6 C 1.38135 * 120.07178 * 359.74154 * 5 4 3 7 7 C 1.38851 * 119.92707 * 0.50802 * 6 5 4 8 8 N 1.39939 * 120.07111 * 179.76853 * 7 6 5 9 9 C 1.34777 * 119.99747 * 335.19332 * 8 7 6 10 10 O 1.21580 * 120.00205 * 354.34180 * 9 8 7 11 11 N 1.34778 * 119.99663 * 174.34169 * 9 8 7 12 12 C 1.46497 * 119.99740 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47260 * 270.00063 * 12 11 9 14 14 H 1.08001 * 119.99722 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99848 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00467 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46765 * 119.99917 * 17 15 13 20 20 H 1.48498 * 109.47129 * 239.99959 * 17 15 13 21 21 C 1.46493 * 120.00344 * 0.02562 * 11 9 8 22 22 C 1.53005 * 109.46920 * 269.99966 * 21 11 9 23 23 C 1.53000 * 117.49572 * 243.61851 * 22 21 11 24 24 C 1.53005 * 60.00182 * 252.50895 * 23 22 21 25 25 C 1.38089 * 119.96591 * 274.87825 * 3 2 1 26 26 C 1.50699 * 120.03383 * 0.02562 * 25 3 2 27 27 C 1.52995 * 109.47124 * 274.80420 * 26 25 3 28 28 H 1.09003 * 109.46891 * 184.99297 * 1 2 3 29 29 H 1.09006 * 109.47210 * 304.99134 * 1 2 3 30 30 H 1.08993 * 109.47429 * 64.99070 * 1 2 3 31 31 H 1.08999 * 109.47000 * 239.99956 * 2 1 3 32 32 H 1.08998 * 109.47120 * 119.99949 * 2 1 3 33 33 H 1.08000 * 119.92989 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.96154 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.03707 * 180.25930 * 6 5 4 36 36 H 0.96996 * 120.00056 * 155.19272 * 8 7 6 37 37 H 1.09004 * 109.47382 * 30.00423 * 12 11 9 38 38 H 1.08997 * 109.47232 * 150.00175 * 12 11 9 39 39 H 0.96998 * 119.99926 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47780 * 149.99782 * 21 11 9 41 41 H 1.09003 * 109.47193 * 29.99637 * 21 11 9 42 42 H 1.08992 * 115.54991 * 29.33043 * 22 21 11 43 43 H 1.08997 * 117.50428 * 359.97438 * 23 22 21 44 44 H 1.08998 * 117.49599 * 145.02188 * 23 22 21 45 45 H 1.08996 * 117.50216 * 252.51434 * 24 23 22 46 46 H 1.09002 * 117.49089 * 107.48682 * 24 23 22 47 47 H 1.08994 * 109.47145 * 34.80990 * 26 25 3 48 48 H 1.09006 * 109.46780 * 154.80588 * 26 25 3 49 49 H 1.08999 * 109.47157 * 184.98817 * 27 26 25 50 50 H 1.08994 * 109.47770 * 304.99497 * 27 26 25 51 51 H 1.09003 * 109.47333 * 64.99421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3582 2.0382 1.1939 5 6 2.8189 3.3419 1.1981 6 6 2.9601 4.0300 0.0087 7 6 2.6288 3.4146 -1.1911 8 7 2.7661 4.1106 -2.3974 9 6 2.7251 5.4577 -2.4066 10 8 2.4667 6.0650 -1.3856 11 7 2.9706 6.1315 -3.5477 12 6 2.9256 7.5958 -3.5579 13 6 1.5274 8.0531 -3.8853 14 1 0.7501 7.3257 -4.0671 15 6 1.2407 9.4000 -3.9526 16 7 2.1874 10.2858 -3.7316 17 14 -0.4922 9.9669 -4.3591 18 1 -1.3652 8.7831 -4.5632 19 1 -1.0214 10.7842 -3.2378 20 1 -0.4677 10.7841 -5.5988 21 6 3.2814 5.3998 -4.7782 22 6 4.7936 5.1894 -4.8783 23 6 5.5235 5.8547 -6.0468 24 6 5.3133 4.3392 -6.0394 25 6 2.1663 2.1050 -1.1920 26 6 1.8099 1.4317 -2.4923 27 6 3.0094 0.6257 -2.9947 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3634 0.5893 0.8419 30 1 -0.3634 0.4344 -0.9312 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2519 1.5013 2.1249 34 1 3.0722 3.8214 2.1321 35 1 3.3240 5.0468 0.0123 36 1 2.8907 3.6235 -3.2269 37 1 3.2115 7.9749 -2.5767 38 1 3.6174 7.9754 -4.3098 39 1 1.9856 11.2333 -3.7786 40 1 2.9365 5.9729 -5.6389 41 1 2.7802 4.4319 -4.7618 42 1 5.3225 5.1203 -3.9278 43 1 4.9265 6.4419 -6.7445 44 1 6.5330 6.2236 -5.8651 45 1 6.1843 3.7111 -5.8528 46 1 4.5778 3.9298 -6.7319 47 1 0.9632 0.7637 -2.3354 48 1 1.5445 2.1873 -3.2318 49 1 2.7829 0.2114 -3.9771 50 1 3.8803 1.2770 -3.0670 51 1 3.2195 -0.1857 -2.2978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487633545.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -2.141650 kcal Electronic energy + Delta-G solvation = -29169.919492 eV Core-core repulsion = 25455.087946 eV Total energy + Delta-G solvation = -3714.831546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.95264 -40.29827 -38.50602 -36.51443 -36.01042 -35.48914 -34.62636 -33.28356 -30.35983 -29.82191 -29.33082 -27.62064 -25.34621 -25.27756 -24.03192 -23.19784 -22.52851 -21.85087 -21.65721 -20.44456 -19.34184 -18.61330 -18.07191 -17.13353 -16.88957 -16.72933 -16.26944 -16.18910 -15.86242 -15.14759 -15.05618 -14.75865 -14.71299 -14.50525 -14.40582 -14.25875 -14.12895 -13.74223 -13.37374 -13.19647 -13.09104 -12.97785 -12.91023 -12.69545 -12.61674 -12.60662 -12.31885 -12.23894 -12.17349 -12.03307 -11.74310 -11.60590 -11.49677 -11.34238 -11.28611 -10.92291 -10.75679 -10.64868 -9.58672 -9.44326 -8.83430 -8.22477 -6.37371 0.44100 0.49210 1.34508 1.37396 1.48446 1.68527 2.13497 2.37647 2.83085 2.91464 2.99119 3.07340 3.81493 3.83197 3.88834 3.95791 4.10512 4.11218 4.13712 4.29199 4.35749 4.46054 4.49118 4.52415 4.57207 4.63114 4.66450 4.72080 4.74852 4.82948 4.90197 4.92669 5.02410 5.04146 5.08341 5.12753 5.16968 5.22365 5.24279 5.29716 5.30482 5.39194 5.42346 5.51084 5.54405 5.61185 5.69396 5.77403 5.80347 6.05085 6.08083 6.21200 6.71182 7.00809 7.29496 7.59255 8.84159 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.003763 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.208174 B = 7438.892136 C = 8769.241829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.168 4.168 7 C 0.160 3.840 8 N -0.670 5.670 9 C 0.693 3.307 10 O -0.616 6.616 11 N -0.607 5.607 12 C 0.283 3.717 13 C -0.542 4.542 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.142 3.858 22 C -0.189 4.189 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.086 4.086 27 C -0.144 4.144 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.415 0.585 37 H -0.003 1.003 38 H 0.028 0.972 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -25.175 -0.345 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.062 4.062 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.188 4.188 7 C 0.064 3.936 8 N -0.320 5.320 9 C 0.395 3.605 10 O -0.496 6.496 11 N -0.340 5.340 12 C 0.161 3.839 13 C -0.581 4.581 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.192 1.192 21 C 0.019 3.981 22 C -0.209 4.209 23 C -0.221 4.221 24 C -0.178 4.178 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.201 4.201 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.255 0.745 37 H 0.015 0.985 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.064 0.936 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.707 -24.458 0.267 24.608 hybrid contribution -0.510 1.482 -0.198 1.580 sum 2.196 -22.976 0.069 23.080 Atomic orbital electron populations 1.21766 0.94538 1.02499 1.01675 1.20623 0.96208 0.90608 1.04261 1.19852 0.97715 0.97278 0.91311 1.21228 1.01648 0.94547 0.98671 1.21167 0.99243 0.95206 0.97064 1.21370 1.03719 1.00893 0.92860 1.17681 0.98745 0.92053 0.85117 1.42676 1.75427 1.04134 1.09722 1.16133 0.78404 0.81817 0.84152 1.90827 1.56585 1.68559 1.33598 1.47398 1.70874 1.07832 1.07891 1.18628 0.95934 0.73697 0.95617 1.21725 0.96117 0.92181 1.48042 0.93130 1.25802 1.01594 0.96556 0.94891 1.70054 1.34562 1.01887 1.50090 0.85399 0.79231 0.78250 0.78092 1.19356 1.20863 1.19178 1.21201 0.93510 0.96403 0.86989 1.22686 0.95087 1.08473 0.94639 1.23061 1.01620 0.96820 1.00622 1.23054 1.03423 0.92655 0.98704 1.19612 1.02921 0.92282 0.97289 1.20572 1.00241 0.99221 0.92296 1.21766 0.96482 0.99841 1.01978 0.90511 0.93443 0.93154 0.89382 0.89530 0.83611 0.85063 0.87360 0.74481 0.98536 0.95429 0.92399 0.90008 0.89312 0.89576 0.88952 0.88844 0.87120 0.86757 0.88868 0.92390 0.90409 0.93569 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.76 71.98 0.70 -1.38 16 2 C -0.08 -1.15 5.38 29.85 0.16 -0.99 16 3 C -0.06 -1.35 5.13 -19.89 -0.10 -1.45 16 4 C -0.14 -3.34 9.68 22.29 0.22 -3.12 16 5 C -0.11 -3.19 10.04 22.25 0.22 -2.96 16 6 C -0.17 -6.23 8.72 22.39 0.20 -6.04 16 7 C 0.16 5.39 6.41 38.15 0.24 5.64 16 8 N -0.67 -23.26 4.86 -317.18 -1.54 -24.80 16 9 C 0.69 31.58 8.08 179.05 1.45 33.03 16 10 O -0.62 -34.16 13.09 -3.97 -0.05 -34.21 16 11 N -0.61 -26.93 2.46 -844.20 -2.07 -29.01 16 12 C 0.28 15.63 5.16 85.63 0.44 16.07 16 13 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.63 5.46 84.65 0.46 1.09 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C 0.14 4.57 5.50 86.38 0.48 5.05 16 22 C -0.19 -5.20 6.01 -10.79 -0.06 -5.27 16 23 C -0.18 -4.59 10.18 30.60 0.31 -4.28 16 24 C -0.14 -2.65 10.25 30.60 0.31 -2.34 16 25 C -0.12 -3.01 5.15 -19.74 -0.10 -3.12 16 26 C -0.09 -1.62 4.93 29.85 0.15 -1.48 16 27 C -0.14 -2.05 9.76 71.98 0.70 -1.34 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.78 6.73 -2.39 -0.02 0.77 16 31 H 0.09 1.05 5.59 -2.39 -0.01 1.04 16 32 H 0.09 0.99 8.05 -2.39 -0.02 0.97 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.88 5.79 -2.91 -0.02 4.87 16 36 H 0.42 11.48 4.98 -92.71 -0.46 11.02 16 37 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 38 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 40 H 0.08 2.75 7.81 -2.39 -0.02 2.73 16 41 H 0.09 2.29 6.29 -2.39 -0.01 2.27 16 42 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.09 2.40 8.03 -2.39 -0.02 2.39 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 1.48 5.58 -2.39 -0.01 1.46 16 48 H 0.06 1.19 6.73 -2.38 -0.02 1.18 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.85 6.74 -2.39 -0.02 0.83 16 Total: -1.00 -76.32 404.71 5.12 -71.19 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.46 Total: 29.92 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.01 Total: -4.51 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.33 Total: -110.13 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -76.32 5.12 -71.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487633545.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.051 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds