Wall clock time and date at job start Tue Mar 31 2020 15:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34428 * 125.42070 * 2 1 4 4 C 1.46794 * 106.41841 * 179.97438 * 3 2 1 5 5 C 1.46735 * 127.03772 * 179.97438 * 4 3 2 6 6 C 1.35331 * 119.99708 * 47.09268 * 5 4 3 7 7 C 1.41519 * 120.00569 * 9.24882 * 6 5 4 8 8 O 1.21819 * 119.99816 * 7.08956 * 7 6 5 9 9 N 1.34771 * 120.00361 * 187.09082 * 7 6 5 10 10 C 1.46496 * 119.99901 * 359.97438 * 9 7 6 11 11 C 1.36817 * 119.99992 * 180.02562 * 9 7 6 12 12 H 1.08001 * 120.00272 * 33.43357 * 11 9 7 13 13 C 1.39037 * 119.99729 * 213.43621 * 11 9 7 14 14 N 1.31377 * 120.00156 * 5.64142 * 13 11 9 15 15 Si 1.86803 * 119.99867 * 185.64515 * 13 11 9 16 16 H 1.48497 * 109.47320 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47068 * 119.99952 * 15 13 11 18 18 H 1.48496 * 109.47288 * 239.99822 * 15 13 11 19 19 C 1.38094 * 105.92531 * 359.77881 * 4 3 2 20 20 C 1.50707 * 125.93100 * 180.21573 * 19 4 3 21 21 N 1.34845 * 108.13498 * 0.35645 * 19 4 3 22 22 C 1.46505 * 124.81614 * 179.89453 * 21 19 4 23 23 C 1.52999 * 109.47054 * 246.50940 * 22 21 19 24 24 C 1.52995 * 109.46961 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.47489 * 59.99635 * 24 23 22 26 26 C 1.53003 * 109.46890 * 299.99852 * 25 24 23 27 27 C 1.52997 * 109.46878 * 126.50477 * 22 21 19 28 28 H 1.09006 * 109.47168 * 275.60394 * 1 2 3 29 29 H 1.08996 * 109.47796 * 35.60530 * 1 2 3 30 30 H 1.09001 * 109.47133 * 155.61062 * 1 2 3 31 31 H 1.07998 * 126.79120 * 359.94182 * 3 2 1 32 32 H 1.07997 * 120.00174 * 227.09696 * 5 4 3 33 33 H 1.08008 * 119.99801 * 189.25121 * 6 5 4 34 34 H 1.09000 * 109.47356 * 93.79811 * 10 9 7 35 35 H 1.09001 * 109.47151 * 213.79736 * 10 9 7 36 36 H 1.09000 * 109.47445 * 333.79790 * 10 9 7 37 37 H 0.97003 * 120.00053 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.46751 * 270.16574 * 20 19 4 39 39 H 1.08998 * 109.46916 * 30.16821 * 20 19 4 40 40 H 1.08998 * 109.46690 * 150.16721 * 20 19 4 41 41 H 1.09005 * 109.46944 * 6.50753 * 22 21 19 42 42 H 1.08997 * 109.47331 * 59.99796 * 23 22 21 43 43 H 1.08999 * 109.46735 * 299.99949 * 23 22 21 44 44 H 1.09003 * 109.47134 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47174 * 299.99459 * 24 23 22 46 46 H 1.08999 * 109.47056 * 59.99752 * 25 24 23 47 47 H 1.09002 * 109.47071 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.47114 * 300.00314 * 26 25 24 49 49 H 1.08997 * 109.46904 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.47551 * 299.99630 * 27 22 21 51 51 H 1.08995 * 109.47543 * 60.00114 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2862 1.0955 0.0000 4 6 3.6741 0.6175 0.0006 5 6 4.8912 1.4372 0.0003 6 6 5.0064 2.4776 0.8581 7 6 4.0483 2.6587 1.8838 8 8 3.1952 1.8108 2.0770 9 7 4.0795 3.7692 2.6468 10 6 5.1057 4.7886 2.4148 11 6 3.1535 3.9439 3.6387 12 1 2.7745 3.0898 4.1802 13 6 2.7004 5.2211 3.9494 14 7 3.0758 6.2470 3.2196 15 14 1.5578 5.4784 5.4047 16 1 1.2881 4.1730 6.0591 17 1 2.1977 6.3976 6.3800 18 1 0.2800 6.0693 4.9324 19 6 3.6000 -0.7614 0.0061 20 6 4.7711 -1.7100 0.0133 21 7 2.2978 -1.1118 0.0006 22 6 1.8026 -2.4906 0.0016 23 6 1.0955 -2.7794 -1.3240 24 6 0.5778 -4.2191 -1.3227 25 6 -0.4081 -4.4057 -0.1675 26 6 0.2992 -4.1168 1.1581 27 6 0.8170 -2.6776 1.1568 28 1 -0.3634 0.1004 1.0228 29 1 -0.3634 0.8355 -0.5983 30 1 -0.3633 -0.9360 -0.4244 31 1 1.9562 2.1238 -0.0009 32 1 5.6949 1.2103 -0.6844 33 1 5.8297 3.1698 0.7599 34 1 4.7136 5.5528 1.7437 35 1 5.3839 5.2467 3.3640 36 1 5.9833 4.3249 1.9642 37 1 2.7593 7.1380 3.4362 38 1 5.0582 -1.9406 -1.0126 39 1 5.6111 -1.2462 0.5303 40 1 4.4907 -2.6293 0.5276 41 1 2.6402 -3.1774 0.1239 42 1 1.7977 -2.6462 -2.1470 43 1 0.2580 -2.0926 -1.4462 44 1 0.0736 -4.4248 -2.2670 45 1 1.4150 -4.9062 -1.2003 46 1 -1.2453 -3.7186 -0.2899 47 1 -0.7766 -5.4315 -0.1664 48 1 1.1364 -4.8038 1.2804 49 1 -0.4033 -4.2493 1.9810 50 1 1.3208 -2.4718 2.1013 51 1 -0.0205 -1.9908 1.0347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491414425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:27 Heat of formation + Delta-G solvation = 33.590110 kcal Electronic energy + Delta-G solvation = -29438.160001 eV Core-core repulsion = 25724.877900 eV Total energy + Delta-G solvation = -3713.282101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98951 -38.53337 -37.89178 -34.67873 -33.08997 -32.28044 -31.64760 -31.03928 -30.98910 -28.89908 -27.71699 -26.19709 -24.83495 -23.78851 -22.82934 -22.75192 -21.63490 -20.46503 -19.23649 -18.26274 -17.26960 -16.59471 -15.98245 -15.95515 -15.25779 -14.79318 -14.57395 -14.41325 -14.31173 -13.95509 -13.67908 -13.36698 -13.23896 -12.94504 -12.77372 -12.69367 -12.62163 -12.41364 -12.35275 -12.07170 -11.97583 -11.60222 -11.47558 -11.33113 -11.25364 -11.18608 -11.09889 -11.00943 -10.91732 -10.75166 -10.58710 -10.32613 -10.28268 -10.21751 -10.16493 -8.91968 -8.84617 -8.13733 -7.40736 -7.09650 -6.76802 -6.16445 -3.76790 1.99997 2.93449 3.24727 3.31379 3.36537 3.38510 3.89876 4.25784 4.40634 4.53499 4.66835 4.75505 4.84078 4.99101 5.06451 5.20537 5.23489 5.24930 5.27268 5.36567 5.37343 5.42028 5.50810 5.56975 5.60276 5.74569 5.75169 5.77950 5.81918 5.87152 5.93808 5.94517 5.98164 5.99152 6.06284 6.14264 6.17087 6.27915 6.39617 6.49242 6.63179 6.84599 6.93838 6.97271 7.23868 7.32165 7.36626 7.67306 7.80422 7.98521 8.08789 8.39928 8.73251 9.41495 9.62137 10.29858 10.86426 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.003339 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.050983 B = 8383.905952 C = 9514.621310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.010 4.010 3 C -0.099 4.099 4 C -0.119 4.119 5 C -0.030 4.030 6 C -0.195 4.195 7 C 0.475 3.525 8 O -0.563 6.563 9 N -0.448 5.448 10 C 0.108 3.892 11 C -0.293 4.293 12 H 0.091 0.909 13 C 0.030 3.970 14 N -0.883 5.883 15 Si 0.922 3.078 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.018 3.982 20 C -0.076 4.076 21 N -0.438 5.438 22 C 0.140 3.860 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.265 0.735 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -17.756 -9.569 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.127 4.127 5 C -0.052 4.052 6 C -0.216 4.216 7 C 0.267 3.733 8 O -0.447 6.447 9 N -0.167 5.167 10 C -0.036 4.036 11 C -0.422 4.422 12 H 0.109 0.891 13 C -0.173 4.173 14 N -0.522 5.522 15 Si 0.749 3.251 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.093 4.093 20 C -0.133 4.133 21 N -0.117 5.117 22 C 0.037 3.963 23 C -0.171 4.171 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.176 4.176 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.080 -18.236 -9.418 20.629 hybrid contribution -0.330 0.694 0.894 1.179 sum -2.410 -17.542 -8.524 19.651 Atomic orbital electron populations 1.20440 0.89672 1.01642 1.02093 1.19671 0.92482 0.85641 1.13797 1.21402 0.90900 0.96435 1.03589 1.19195 0.92795 0.90206 1.10492 1.21386 0.94074 0.93469 0.96289 1.22361 1.01457 0.99481 0.98291 1.16962 0.87180 0.85014 0.84170 1.90754 1.39494 1.43358 1.71096 1.43545 1.26331 1.17251 1.29601 1.21541 0.88875 0.91733 1.01480 1.19528 1.18065 0.93563 1.11020 0.89125 1.25449 0.97526 0.95664 0.98611 1.69918 1.44696 0.99489 1.38098 0.85928 0.79866 0.78400 0.80893 1.19349 1.20874 1.20789 1.20253 0.84207 0.93796 1.11017 1.20202 0.94842 0.96819 1.01440 1.43144 1.04692 1.04538 1.59372 1.21218 0.97261 0.82146 0.95668 1.22036 1.00979 0.97282 0.96801 1.21502 0.99082 0.96097 0.98657 1.21583 0.98324 1.01433 0.94616 1.21497 1.00172 0.96099 0.97584 1.22078 0.99754 0.97484 0.98325 0.91699 0.91267 0.92192 0.85521 0.87115 0.86786 0.92058 0.92714 0.95165 0.92525 0.91943 0.90592 0.92644 0.89332 0.91448 0.90613 0.91610 0.91898 0.91795 0.91897 0.91968 0.91499 0.91129 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 8.44 36.01 0.30 -0.89 16 2 C -0.01 -0.17 6.36 -81.89 -0.52 -0.69 16 3 C -0.10 -2.11 8.02 -37.47 -0.30 -2.41 16 4 C -0.12 -2.39 4.62 -103.06 -0.48 -2.86 16 5 C -0.03 -0.57 9.81 -37.19 -0.36 -0.93 16 6 C -0.19 -4.08 9.14 -39.37 -0.36 -4.44 16 7 C 0.47 12.28 7.11 -15.01 -0.11 12.17 16 8 O -0.56 -15.88 11.92 5.08 0.06 -15.82 16 9 N -0.45 -12.10 2.97 -125.50 -0.37 -12.47 16 10 C 0.11 2.54 8.56 59.84 0.51 3.05 16 11 C -0.29 -8.50 9.04 -15.03 -0.14 -8.64 16 12 H 0.09 2.76 7.60 -52.49 -0.40 2.36 16 13 C 0.03 0.84 5.24 -17.45 -0.09 0.75 16 14 N -0.88 -24.59 11.00 55.50 0.61 -23.98 16 15 Si 0.92 21.61 29.56 -169.99 -5.02 16.59 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.02 0.32 6.94 -81.32 -0.56 -0.25 16 20 C -0.08 -0.99 9.77 36.01 0.35 -0.64 16 21 N -0.44 -7.07 2.57 -100.54 -0.26 -7.33 16 22 C 0.14 1.70 2.58 -67.93 -0.17 1.52 16 23 C -0.13 -1.35 5.25 -26.73 -0.14 -1.49 16 24 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 25 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 26 C -0.12 -1.01 5.92 -26.75 -0.16 -1.17 16 27 C -0.14 -1.62 5.05 -26.75 -0.14 -1.76 16 28 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.72 4.19 -51.93 -0.22 0.50 16 31 H 0.13 2.96 7.97 -52.49 -0.42 2.54 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.11 2.09 5.95 -52.48 -0.31 1.78 16 34 H 0.06 1.51 7.25 -51.93 -0.38 1.14 16 35 H 0.05 1.32 7.75 -51.93 -0.40 0.92 16 36 H 0.03 0.59 5.81 -51.93 -0.30 0.29 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.00 7.97 -51.93 -0.41 0.59 16 40 H 0.05 0.65 6.88 -51.93 -0.36 0.29 16 41 H 0.09 1.00 6.45 -51.93 -0.34 0.67 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.81 5.51 -51.93 -0.29 0.53 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.08 0.99 4.88 -51.93 -0.25 0.74 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -33.27 386.96 -10.10 -43.38 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.27 Total: 4.62 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.68 Total: -10.82 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.02 Total: -43.78 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.06 Total: -15.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.27 -10.10 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491414425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.967 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds