Wall clock time and date at job start Tue Mar 31 2020 16:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.53008 * 109.46980 * 240.00439 * 2 1 3 5 5 O 1.45192 * 109.47557 * 120.00121 * 2 1 3 6 6 C 1.34639 * 116.99942 * 59.99992 * 5 2 1 7 7 O 1.21510 * 119.99809 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99861 * 179.97438 * 6 5 2 9 9 C 1.47770 * 118.55059 * 0.02562 * 8 6 5 10 10 C 1.54029 * 111.55533 * 221.88248 * 9 8 6 11 11 N 1.44767 * 109.68024 * 39.99721 * 10 9 8 12 12 C 1.46908 * 111.00239 * 142.14015 * 11 10 9 13 13 C 1.53001 * 109.46980 * 57.94541 * 12 11 10 14 14 C 1.50701 * 109.46888 * 177.28971 * 13 12 11 15 15 H 1.07992 * 120.00190 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99627 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00279 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99681 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47440 * 59.99764 * 18 16 14 20 20 H 1.48501 * 109.47354 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47387 * 300.00048 * 18 16 14 22 22 C 1.46263 * 110.64114 * 265.83559 * 11 10 9 23 23 C 1.47547 * 114.37060 * 87.74678 * 22 11 10 24 24 C 1.53006 * 109.42389 * 177.70147 * 23 22 11 25 25 F 1.39898 * 109.42763 * 57.86567 * 23 22 11 26 26 C 1.44683 * 118.54410 * 179.97438 * 8 6 5 27 27 H 1.08999 * 109.46723 * 299.99348 * 1 2 3 28 28 H 1.08995 * 109.47597 * 59.99646 * 1 2 3 29 29 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47180 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47342 * 300.00716 * 3 2 1 32 32 H 1.08998 * 109.47240 * 60.00072 * 3 2 1 33 33 H 1.09002 * 109.46884 * 299.99437 * 4 2 1 34 34 H 1.08995 * 109.47025 * 59.99564 * 4 2 1 35 35 H 1.08997 * 109.46898 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.06986 * 101.34614 * 9 8 6 37 37 H 1.08998 * 109.06436 * 342.41446 * 9 8 6 38 38 H 1.08997 * 109.43863 * 279.93525 * 10 9 8 39 39 H 1.09000 * 109.40436 * 160.03531 * 10 9 8 40 40 H 1.08994 * 109.46809 * 177.94508 * 12 11 10 41 41 H 1.09004 * 109.46485 * 297.94820 * 12 11 10 42 42 H 1.09007 * 109.47046 * 297.28542 * 13 12 11 43 43 H 1.08996 * 109.46885 * 57.28666 * 13 12 11 44 44 H 0.96997 * 120.00092 * 180.02562 * 17 16 14 45 45 H 1.09002 * 108.50603 * 326.47980 * 22 11 10 46 46 H 1.08997 * 108.38285 * 208.92194 * 22 11 10 47 47 H 1.08997 * 109.47159 * 59.99987 * 24 23 22 48 48 H 1.09004 * 109.46737 * 180.02562 * 24 23 22 49 49 H 1.09000 * 109.47019 * 299.99785 * 24 23 22 50 50 H 1.09004 * 109.46019 * 330.90411 * 26 8 6 51 51 H 1.08997 * 109.45847 * 210.93971 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0141 -0.6844 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0683 -2.6657 2.4165 9 6 2.9197 -1.9808 3.4113 10 6 4.0669 -2.8878 3.8945 11 7 4.6008 -3.6362 2.7762 12 6 6.0604 -3.7676 2.8794 13 6 6.4186 -4.4546 4.1988 14 6 7.9110 -4.6494 4.2747 15 1 8.5409 -4.3168 3.4630 16 6 8.4721 -5.2530 5.3800 17 7 7.7049 -5.6584 6.3683 18 14 10.3219 -5.4951 5.4738 19 1 10.9981 -4.1748 5.4041 20 1 10.6696 -6.1618 6.7544 21 1 10.7688 -6.3406 4.3377 22 6 3.9618 -4.9485 2.6819 23 6 2.7196 -4.9649 1.8859 24 6 2.1803 -6.3950 1.8140 25 9 2.9895 -4.5049 0.5926 26 6 1.6604 -4.0475 2.5494 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2496 36 1 2.3078 -1.6944 4.2667 37 1 3.3417 -1.0826 2.9605 38 1 3.6896 -3.5801 4.6471 39 1 4.8554 -2.2737 4.3295 40 1 6.4311 -4.3648 2.0464 41 1 6.5172 -2.7784 2.8491 42 1 6.0903 -3.8338 5.0325 43 1 5.9225 -5.4238 4.2501 44 1 8.0996 -6.0828 7.1461 45 1 3.7317 -5.2945 3.6895 46 1 4.6701 -5.6441 2.2319 47 1 1.9718 -6.7558 2.8211 48 1 1.2627 -6.4080 1.2257 49 1 2.9224 -7.0399 1.3433 50 1 0.6971 -4.1905 2.0598 51 1 1.5717 -4.2999 3.6060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496218861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:23 Heat of formation + Delta-G solvation = -141.713221 kcal Electronic energy + Delta-G solvation = -31301.191018 eV Core-core repulsion = 27149.537970 eV Total energy + Delta-G solvation = -4151.653048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.48108 -41.82250 -40.10408 -38.25891 -36.47701 -35.38174 -34.83191 -34.43243 -31.73423 -29.79340 -28.30074 -28.24333 -27.85325 -27.50944 -25.53472 -23.93981 -23.02269 -21.68807 -20.90348 -20.12845 -18.94977 -18.58442 -17.95664 -17.51784 -17.17448 -16.85243 -16.50596 -16.45923 -15.81412 -15.58480 -15.43402 -15.17852 -15.00006 -14.77296 -14.46907 -14.24544 -14.08559 -13.66331 -13.51706 -13.45382 -13.23711 -13.15595 -13.09647 -12.96350 -12.84995 -12.80123 -12.78383 -12.74116 -12.58271 -12.34617 -12.18565 -12.06327 -11.91541 -11.85180 -11.68242 -11.59130 -11.31354 -11.28136 -10.95196 -10.55906 -9.65173 -9.16572 -8.21667 -6.32649 1.24317 1.39493 1.40930 1.48914 1.90817 2.38884 2.73862 3.00143 3.11298 3.46443 3.61722 3.80253 3.83640 3.87154 3.97712 4.01607 4.03110 4.16128 4.26859 4.34422 4.50332 4.55235 4.57148 4.62223 4.66605 4.71893 4.73832 4.79238 4.81848 4.85340 4.87084 4.89893 4.93424 4.96588 5.00894 5.12634 5.15238 5.16559 5.34845 5.39033 5.45298 5.54156 5.56299 5.60277 5.72651 5.98857 6.25293 6.30421 6.37619 6.83232 7.36433 7.40678 8.88367 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.003228 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.228297 B = 8672.277736 C = 9448.853915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.368 6.368 6 C 0.650 3.350 7 O -0.587 6.587 8 N -0.576 5.576 9 C 0.128 3.872 10 C 0.043 3.957 11 N -0.531 5.531 12 C 0.079 3.921 13 C 0.007 3.993 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.038 3.962 23 C 0.106 3.894 24 C -0.165 4.165 25 F -0.217 7.217 26 C 0.117 3.883 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.003 0.997 43 H -0.006 1.006 44 H 0.263 0.737 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 9.713 -8.816 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.283 6.283 6 C 0.406 3.594 7 O -0.478 6.478 8 N -0.314 5.314 9 C 0.005 3.995 10 C -0.086 4.086 11 N -0.253 5.253 12 C -0.048 4.048 13 C -0.031 4.031 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.091 4.091 23 C 0.086 3.914 24 C -0.223 4.223 25 F -0.197 7.197 26 C -0.006 4.006 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.021 0.979 43 H 0.012 0.988 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.694 9.831 -9.391 21.530 hybrid contribution 1.545 -1.021 0.853 2.038 sum -15.150 8.810 -8.538 19.494 Atomic orbital electron populations 1.22426 0.93511 1.03657 1.03539 1.22370 0.94840 0.92559 0.81493 1.21863 1.02080 0.90825 1.04357 1.22428 1.00992 1.02208 0.97764 1.86306 1.71569 1.23389 1.47024 1.18137 0.78613 0.80840 0.81836 1.90844 1.42891 1.70945 1.43095 1.46398 1.51866 1.11173 1.21980 1.22176 0.90743 0.94868 0.91673 1.22392 0.97248 0.97488 0.91500 1.61125 1.04845 1.16396 1.42947 1.22167 0.85486 0.99975 0.97207 1.19535 0.95444 0.94651 0.93515 1.21565 0.93977 1.39033 1.03743 0.92540 1.25854 1.02862 0.95112 0.95343 1.70053 1.37113 1.41277 1.08323 0.85597 0.79928 0.78706 0.77409 1.19247 1.20833 1.19561 1.21528 0.96057 0.91469 1.00036 1.20987 0.95613 0.96068 0.78713 1.22289 1.02497 0.92415 1.05084 1.92835 1.95260 1.90836 1.40815 1.22133 0.97267 0.78260 1.02976 0.91751 0.89175 0.91956 0.91936 0.87941 0.90907 0.92224 0.89088 0.93192 0.88762 0.89521 0.93308 0.90121 0.92922 0.91548 0.97917 0.98760 0.92780 0.92377 0.92366 0.88512 0.90007 0.91547 0.88425 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 8.37 71.98 0.60 -2.87 16 2 C 0.12 2.75 1.13 -10.79 -0.01 2.74 16 3 C -0.13 -2.10 8.85 71.98 0.64 -1.47 16 4 C -0.18 -4.24 8.37 71.98 0.60 -3.63 16 5 O -0.37 -10.26 8.39 -55.49 -0.47 -10.72 16 6 C 0.65 19.92 7.04 129.79 0.91 20.83 16 7 O -0.59 -19.90 10.80 19.81 0.21 -19.69 16 8 N -0.58 -15.92 2.44 -947.31 -2.31 -18.23 16 9 C 0.13 3.19 6.47 86.48 0.56 3.75 16 10 C 0.04 1.30 4.35 87.05 0.38 1.68 16 11 N -0.53 -18.68 4.32 -911.92 -3.94 -22.62 16 12 C 0.08 3.26 4.93 86.30 0.43 3.69 16 13 C 0.01 0.35 4.46 29.85 0.13 0.48 16 14 C -0.54 -30.13 9.11 25.60 0.23 -29.89 16 15 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.01 0.38 5.46 84.66 0.46 0.84 16 17 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 18 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.04 1.24 2.82 84.72 0.24 1.48 16 23 C 0.11 3.04 1.28 -11.80 -0.02 3.02 16 24 C -0.16 -3.63 8.87 71.98 0.64 -2.99 16 25 F -0.22 -7.90 15.48 44.97 0.70 -7.21 16 26 C 0.12 2.91 4.63 87.42 0.41 3.31 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.25 6.89 -2.39 -0.02 2.24 16 38 H 0.05 1.46 7.14 -2.39 -0.02 1.44 16 39 H 0.08 2.57 7.06 -2.39 -0.02 2.56 16 40 H 0.05 2.26 7.88 -2.39 -0.02 2.24 16 41 H 0.07 2.70 8.10 -2.38 -0.02 2.69 16 42 H 0.00 0.13 6.91 -2.38 -0.02 0.12 16 43 H -0.01 -0.32 7.15 -2.39 -0.02 -0.33 16 44 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.06 1.86 6.99 -2.39 -0.02 1.84 16 46 H 0.06 2.13 7.49 -2.39 -0.02 2.11 16 47 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 49 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.10 2.40 7.23 -2.39 -0.02 2.38 16 51 H 0.12 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -68.89 390.05 3.60 -65.29 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.89 Total: 20.83 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.21 Total: 0.99 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.97 Total: -94.98 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.25 Total: -30.41 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.70 Total: -7.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.89 3.60 -65.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496218861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.424 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds