Wall clock time and date at job start Tue Mar 31 2020 16:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47459 * 2 1 4 4 C 1.53008 * 109.47181 * 240.00141 * 2 1 3 5 5 O 1.45200 * 109.47284 * 120.00361 * 2 1 3 6 6 C 1.34635 * 116.99888 * 59.99562 * 5 2 1 7 7 O 1.21515 * 120.00317 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00000 * 179.97438 * 6 5 2 9 9 C 1.44881 * 118.74750 * 0.02562 * 8 6 5 10 10 C 1.54780 * 109.68374 * 269.74560 * 9 8 6 11 11 N 1.41448 * 109.98217 * 290.25806 * 10 9 8 12 12 C 1.46896 * 110.99862 * 191.68188 * 11 10 9 13 13 C 1.52997 * 109.47114 * 66.04479 * 12 11 10 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 C 1.46199 * 116.34212 * 63.48053 * 11 10 9 23 23 C 1.51275 * 109.09909 * 272.96758 * 22 11 10 24 24 C 1.52997 * 109.44791 * 212.45881 * 23 22 11 25 25 F 1.39897 * 109.44797 * 332.36575 * 23 22 11 26 26 C 1.47609 * 118.74812 * 180.02562 * 8 6 5 27 27 H 1.08995 * 109.47005 * 299.99828 * 1 2 3 28 28 H 1.09003 * 109.46888 * 60.00153 * 1 2 3 29 29 H 1.09000 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47227 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46692 * 300.00466 * 3 2 1 32 32 H 1.09005 * 109.46328 * 59.99969 * 3 2 1 33 33 H 1.09000 * 109.47031 * 300.00086 * 4 2 1 34 34 H 1.08993 * 109.46927 * 60.00248 * 4 2 1 35 35 H 1.08993 * 109.47119 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.44355 * 149.68082 * 9 8 6 37 37 H 1.09001 * 109.40247 * 29.78197 * 9 8 6 38 38 H 1.08994 * 109.38929 * 170.09865 * 10 9 8 39 39 H 1.09000 * 109.29927 * 50.35813 * 10 9 8 40 40 H 1.09001 * 109.47271 * 306.04748 * 12 11 10 41 41 H 1.09004 * 109.47041 * 186.04594 * 12 11 10 42 42 H 1.09001 * 109.46832 * 59.99999 * 13 12 11 43 43 H 1.09000 * 109.47611 * 300.00296 * 13 12 11 44 44 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 45 45 H 1.08991 * 109.53533 * 32.85852 * 22 11 10 46 46 H 1.09002 * 109.52962 * 153.08844 * 22 11 10 47 47 H 1.09000 * 109.47383 * 299.84731 * 24 23 22 48 48 H 1.09003 * 109.47175 * 59.84339 * 24 23 22 49 49 H 1.08996 * 109.47388 * 179.83949 * 24 23 22 50 50 H 1.09012 * 109.11308 * 258.76688 * 26 8 6 51 51 H 1.08998 * 109.11807 * 17.89131 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0680 -2.6658 2.4165 9 6 2.9030 -1.9986 3.3946 10 6 4.3935 -2.1841 3.0210 11 7 4.7759 -3.5323 3.2134 12 6 6.2352 -3.6818 3.1352 13 6 6.8867 -2.9476 4.3088 14 6 8.3837 -3.1015 4.2290 15 1 8.8261 -3.6662 3.4217 16 6 9.1884 -2.5215 5.1865 17 7 8.6495 -1.8342 6.1699 18 14 11.0441 -2.7117 5.0871 19 1 11.6140 -1.5966 4.2890 20 1 11.6185 -2.6846 6.4563 21 1 11.3750 -4.0052 4.4371 22 6 4.1020 -4.5235 2.3764 23 6 2.8185 -4.9520 3.0526 24 6 2.5313 -6.4172 2.7188 25 9 2.9512 -4.8079 4.4378 26 6 1.6554 -4.0762 2.5559 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 2.7202 -2.4268 4.3802 37 1 2.6629 -0.9355 3.4108 38 1 5.0073 -1.5405 3.6510 39 1 4.5394 -1.9124 1.9755 40 1 6.5941 -3.2582 2.1973 41 1 6.4949 -4.7396 3.1791 42 1 6.5277 -3.3712 5.2468 43 1 6.6270 -1.8899 4.2650 44 1 9.2158 -1.4258 6.8433 45 1 3.8736 -4.0854 1.4049 46 1 4.7505 -5.3896 2.2435 47 1 2.4263 -6.5302 1.6398 48 1 3.3551 -7.0382 3.0707 49 1 1.6080 -6.7271 3.2081 50 1 0.8322 -4.1386 3.2678 51 1 1.3188 -4.4471 1.5878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496218862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:26 Heat of formation + Delta-G solvation = -135.827024 kcal Electronic energy + Delta-G solvation = -31061.951408 eV Core-core repulsion = 26910.553604 eV Total energy + Delta-G solvation = -4151.397803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.47945 -42.04259 -40.03429 -38.30461 -36.62173 -35.45669 -34.93635 -34.44149 -31.85555 -29.86849 -28.35692 -28.30126 -27.88002 -27.46666 -25.69513 -24.04990 -22.87505 -21.63488 -21.04123 -20.28701 -18.93549 -18.59283 -18.07347 -17.55091 -17.13819 -17.00169 -16.59273 -16.43097 -16.07574 -15.68238 -15.56271 -15.29958 -15.13772 -14.84363 -14.40591 -14.33124 -14.06681 -13.83951 -13.50471 -13.47122 -13.34583 -13.14228 -13.07302 -12.97709 -12.87851 -12.86651 -12.83743 -12.59079 -12.49696 -12.47781 -12.42383 -12.27137 -11.95266 -11.81038 -11.69805 -11.38625 -11.28256 -11.16533 -11.03611 -10.51482 -9.89074 -9.09480 -8.17998 -6.28920 1.07088 1.41037 1.42290 1.53257 1.66891 2.40900 2.71687 2.88292 3.15468 3.30526 3.65833 3.71111 3.74856 3.79135 3.81046 3.95363 4.03926 4.09975 4.22520 4.39674 4.41679 4.47442 4.52108 4.57634 4.61923 4.62575 4.63236 4.70860 4.76927 4.82758 4.84080 4.87187 4.87764 4.94669 5.08353 5.09621 5.18316 5.20267 5.27219 5.28848 5.37735 5.46338 5.47190 5.70840 5.78682 6.11630 6.19260 6.30302 6.51490 6.87974 7.19538 7.39810 8.93898 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.003520 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.863715 B = 7952.596731 C = 9492.367317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.586 6.586 8 N -0.588 5.588 9 C 0.122 3.878 10 C 0.068 3.932 11 N -0.563 5.563 12 C 0.091 3.909 13 C 0.038 3.962 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.051 3.949 23 C 0.111 3.889 24 C -0.162 4.162 25 F -0.206 7.206 26 C 0.111 3.889 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.065 0.935 42 H -0.007 1.007 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.402 -0.204 -13.260 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.282 6.282 6 C 0.404 3.596 7 O -0.477 6.477 8 N -0.327 5.327 9 C -0.002 4.002 10 C -0.062 4.062 11 N -0.286 5.286 12 C -0.036 4.036 13 C 0.001 3.999 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.077 4.077 23 C 0.091 3.909 24 C -0.220 4.220 25 F -0.187 7.187 26 C -0.010 4.010 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.109 0.891 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.725 -0.285 -12.941 22.763 hybrid contribution 1.411 0.338 -0.273 1.476 sum -17.314 0.053 -13.214 21.780 Atomic orbital electron populations 1.22437 0.93336 1.03828 1.03617 1.22444 0.94989 0.92528 0.81473 1.21888 1.02066 0.91082 1.04386 1.22454 1.01112 1.02402 0.97516 1.86373 1.71380 1.23152 1.47308 1.18195 0.78651 0.81050 0.81744 1.90847 1.42395 1.70787 1.43687 1.46818 1.52448 1.11940 1.21504 1.21737 0.87974 0.98268 0.92208 1.21629 0.96728 0.89410 0.98424 1.57996 1.07147 1.05458 1.58045 1.21946 0.84399 1.00006 0.97205 1.18934 0.93682 0.94195 0.93121 1.21604 0.93075 1.33138 1.10444 0.92324 1.25917 1.03951 0.94766 0.94845 1.70111 1.37140 1.35388 1.14269 0.85470 0.79298 0.78938 0.77457 1.19833 1.20781 1.18787 1.22205 0.95413 0.96018 0.94082 1.21316 0.94942 0.97968 0.76709 1.22326 1.04249 0.91021 1.04409 1.92875 1.96986 1.97001 1.31791 1.22608 0.96077 0.77541 1.04758 0.92028 0.88938 0.91626 0.92041 0.87674 0.91212 0.91619 0.88819 0.92958 0.89148 0.88389 0.90591 0.96848 0.96439 0.91698 0.98852 0.98506 0.92800 0.93580 0.89245 0.88753 0.90746 0.89527 0.89086 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 2 C 0.12 2.53 1.13 -10.79 -0.01 2.51 16 3 C -0.14 -2.16 8.85 71.98 0.64 -1.52 16 4 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 5 O -0.37 -9.80 8.56 -55.44 -0.47 -10.27 16 6 C 0.65 18.20 7.65 129.79 0.99 19.19 16 7 O -0.59 -17.33 11.18 19.79 0.22 -17.11 16 8 N -0.59 -15.82 2.18 -948.16 -2.07 -17.89 16 9 C 0.12 3.54 5.43 87.29 0.47 4.01 16 10 C 0.07 2.38 5.27 87.91 0.46 2.85 16 11 N -0.56 -20.45 3.21 -911.61 -2.93 -23.38 16 12 C 0.09 3.87 4.89 86.30 0.42 4.29 16 13 C 0.04 2.04 4.90 29.85 0.15 2.18 16 14 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.19 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 18 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 C 0.05 1.47 4.78 85.87 0.41 1.88 16 23 C 0.11 2.71 1.21 -11.08 -0.01 2.70 16 24 C -0.16 -2.76 8.62 71.98 0.62 -2.14 16 25 F -0.21 -6.52 14.82 44.97 0.67 -5.85 16 26 C 0.11 2.54 5.30 86.45 0.46 3.00 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 2.75 7.13 -2.39 -0.02 2.73 16 37 H 0.10 2.64 7.23 -2.39 -0.02 2.62 16 38 H 0.08 3.05 5.90 -2.39 -0.01 3.03 16 39 H 0.01 0.48 8.11 -2.39 -0.02 0.46 16 40 H 0.02 0.74 8.11 -2.39 -0.02 0.72 16 41 H 0.06 2.68 7.57 -2.38 -0.02 2.66 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.00 -0.19 6.32 -2.39 -0.02 -0.20 16 44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.05 1.33 7.32 -2.39 -0.02 1.31 16 46 H 0.09 2.43 6.97 -2.39 -0.02 2.42 16 47 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 48 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 51 H 0.11 2.44 6.81 -2.39 -0.02 2.43 16 Total: -1.00 -68.99 390.37 5.12 -63.87 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.90 Total: 17.66 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.50 Total: 3.06 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.71 Total: -97.72 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.25 Total: -27.38 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.67 Total: -5.85 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.99 5.12 -63.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496218862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.961 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds