Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38301 * 119.96761 * 2 1 4 4 C 1.38256 * 120.14458 * 180.02562 * 3 2 1 5 5 C 1.38141 * 120.07032 * 359.95467 * 4 3 2 6 6 C 1.38850 * 119.92579 * 0.02562 * 5 4 3 7 7 N 1.39922 * 120.07020 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00002 * 32.04827 * 7 6 5 9 9 O 1.21289 * 119.99700 * 4.85909 * 8 7 6 10 10 C 1.50704 * 120.00101 * 184.86015 * 8 7 6 11 11 H 1.08994 * 109.46887 * 33.44506 * 10 8 7 12 12 C 1.52996 * 109.46862 * 273.43997 * 10 8 7 13 13 N 1.46905 * 109.46876 * 153.44356 * 10 8 7 14 14 C 1.46846 * 110.99664 * 173.45760 * 13 10 8 15 15 C 1.53036 * 109.52335 * 185.83709 * 14 13 10 16 16 C 1.53124 * 109.27877 * 300.82521 * 15 14 13 17 17 C 1.52995 * 109.52186 * 177.55718 * 16 15 14 18 18 C 1.50706 * 109.47349 * 65.32000 * 17 16 15 19 19 H 1.07999 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99993 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00439 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99609 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46813 * 89.99884 * 22 20 18 24 24 H 1.48497 * 109.46923 * 209.99304 * 22 20 18 25 25 H 1.48497 * 109.47261 * 329.99782 * 22 20 18 26 26 C 1.53114 * 109.16016 * 57.65389 * 16 15 14 27 27 C 1.46840 * 110.99998 * 297.66838 * 13 10 8 28 28 C 1.38095 * 119.96393 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47252 * 270.02221 * 1 2 3 30 30 H 1.09007 * 109.47029 * 30.02162 * 1 2 3 31 31 H 1.09004 * 109.47217 * 150.01516 * 1 2 3 32 32 H 1.08001 * 119.92760 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.96809 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.03689 * 180.02562 * 5 4 3 35 35 H 0.97002 * 120.00352 * 212.05282 * 7 6 5 36 36 H 1.09001 * 109.47615 * 300.00248 * 12 10 8 37 37 H 1.09005 * 109.47197 * 60.00573 * 12 10 8 38 38 H 1.09000 * 109.46859 * 179.97438 * 12 10 8 39 39 H 1.08997 * 109.46586 * 305.85331 * 14 13 10 40 40 H 1.08999 * 109.46150 * 65.82538 * 14 13 10 41 41 H 1.08998 * 109.50500 * 180.88659 * 15 14 13 42 42 H 1.09003 * 109.50386 * 60.76087 * 15 14 13 43 43 H 1.08995 * 109.52060 * 297.74519 * 16 15 14 44 44 H 1.08999 * 109.47384 * 185.31334 * 17 16 15 45 45 H 1.08998 * 109.47833 * 305.31604 * 17 16 15 46 46 H 0.97003 * 120.00416 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.50091 * 182.41159 * 26 16 15 48 48 H 1.08993 * 109.50758 * 62.28573 * 26 16 15 49 49 H 1.09005 * 109.46605 * 294.17927 * 27 13 10 50 50 H 1.09004 * 109.46672 * 54.14844 * 27 13 10 51 51 H 1.08004 * 120.03474 * 359.71831 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 -0.0005 5 6 4.2762 0.0090 -0.0001 6 6 3.5856 -1.1955 0.0003 7 7 4.2874 -2.4060 0.0012 8 6 5.4810 -2.4925 0.6211 9 8 5.9062 -1.5482 1.2525 10 6 6.2874 -3.7623 0.5297 11 1 6.1258 -4.2260 -0.4434 12 6 5.8476 -4.7262 1.6335 13 7 7.7135 -3.4495 0.6923 14 6 8.5165 -4.6769 0.7640 15 6 9.9709 -4.3189 1.0780 16 6 10.5121 -3.3957 -0.0173 17 6 11.9462 -2.9852 0.3225 18 6 12.8382 -4.1995 0.2868 19 1 12.4235 -5.1672 0.0463 20 6 14.1834 -4.0750 0.5623 21 7 14.6883 -2.8967 0.8557 22 14 15.2888 -5.5803 0.5188 23 1 15.8385 -5.7512 -0.8501 24 1 16.4051 -5.4027 1.4818 25 1 14.5015 -6.7835 0.8899 26 6 9.6295 -2.1475 -0.1039 27 6 8.1850 -2.5686 -0.3837 28 6 2.1967 -1.1964 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6561 2.1324 0.0004 33 1 4.1169 2.1396 -0.0010 34 1 5.3561 0.0130 -0.0001 35 1 3.9149 -3.1830 -0.4443 36 1 6.0092 -4.2625 2.6066 37 1 4.7894 -4.9583 1.5128 38 1 6.4305 -5.6449 1.5671 39 1 8.1238 -5.3225 1.5494 40 1 8.4692 -5.1982 -0.1921 41 1 10.5698 -5.2288 1.1156 42 1 10.0207 -3.8096 2.0404 43 1 10.4987 -3.9184 -0.9737 44 1 12.2976 -2.2550 -0.4064 45 1 11.9718 -2.5449 1.3192 46 1 15.6348 -2.8091 1.0492 47 1 9.9843 -1.5063 -0.9108 48 1 9.6739 -1.6042 0.8399 49 1 8.1392 -3.0998 -1.3345 50 1 7.5515 -1.6828 -0.4319 51 1 1.6567 -2.1317 0.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516647855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = -20.616396 kcal Electronic energy + Delta-G solvation = -28182.215145 eV Core-core repulsion = 24466.582474 eV Total energy + Delta-G solvation = -3715.632671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93185 -39.34736 -38.14697 -35.15778 -34.92382 -32.82249 -32.53288 -30.90037 -30.45328 -29.59930 -27.34246 -27.15183 -24.98846 -23.80215 -22.63937 -22.38372 -21.64196 -20.60721 -19.95847 -18.93044 -17.83817 -17.10644 -16.47629 -16.21364 -15.91843 -15.51123 -15.02657 -14.64775 -14.44144 -14.29916 -14.02907 -13.97298 -13.64257 -13.39180 -13.32809 -13.11079 -12.79347 -12.60073 -12.45182 -12.40731 -11.98420 -11.95997 -11.82165 -11.65527 -11.40852 -11.40064 -11.07690 -10.81603 -10.64173 -10.60555 -10.49657 -10.26620 -9.94668 -9.75085 -9.47118 -9.02071 -8.97144 -8.83451 -8.30201 -8.29506 -8.13343 -5.93999 -3.95555 1.05426 1.15914 2.44619 2.71243 3.34077 3.40585 3.43097 3.57802 3.93881 4.38762 4.49695 4.54289 4.62817 4.85116 4.87471 4.87996 5.04210 5.16761 5.20666 5.25721 5.30273 5.40393 5.41252 5.43250 5.47929 5.51034 5.54715 5.59685 5.70761 5.81782 5.89118 5.90661 6.00845 6.08015 6.15010 6.15909 6.27418 6.33819 6.36969 6.45772 6.60170 6.69697 6.83358 7.00599 7.03635 7.15928 7.23675 7.30351 7.34252 7.74664 7.91846 7.97944 8.07181 8.49668 9.11066 9.67595 11.17290 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.002137 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.325062 B =13101.944065 C =13827.084356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.128 4.128 6 C 0.157 3.843 7 N -0.680 5.680 8 C 0.517 3.483 9 O -0.488 6.488 10 C 0.068 3.932 11 H 0.058 0.942 12 C -0.145 4.145 13 N -0.513 5.513 14 C 0.054 3.946 15 C -0.099 4.099 16 C -0.081 4.081 17 C 0.028 3.972 18 C -0.514 4.514 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.109 4.109 27 C 0.058 3.942 28 C -0.152 4.152 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.017 0.983 46 H 0.259 0.741 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.026 0.974 50 H 0.066 0.934 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.635 1.441 -3.192 29.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.113 4.113 5 C -0.148 4.148 6 C 0.062 3.938 7 N -0.327 5.327 8 C 0.304 3.696 9 O -0.359 6.359 10 C -0.044 4.044 11 H 0.075 0.925 12 C -0.202 4.202 13 N -0.239 5.239 14 C -0.073 4.073 15 C -0.137 4.137 16 C -0.100 4.100 17 C -0.009 4.009 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.146 4.146 27 C -0.069 4.069 28 C -0.172 4.172 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.044 0.956 50 H 0.084 0.916 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -29.011 2.412 -2.224 29.196 hybrid contribution 0.449 -1.604 -1.050 1.969 sum -28.562 0.808 -3.274 28.761 Atomic orbital electron populations 1.20780 0.91041 1.02741 1.02383 1.19668 0.95903 0.92577 0.98926 1.21004 0.94251 0.97449 1.03219 1.21062 0.94064 0.97840 0.98376 1.21231 1.01270 0.90893 1.01410 1.17738 0.90740 0.85842 0.99455 1.43687 1.21063 1.12052 1.55857 1.20840 0.80523 0.90210 0.78070 1.90743 1.68500 1.38600 1.38065 1.21524 0.90732 0.92458 0.99661 0.92457 1.21874 1.00843 0.98779 0.98746 1.61758 0.98828 1.16737 1.46608 1.22346 0.95378 0.89934 0.99668 1.21554 0.91518 1.00788 0.99830 1.21244 0.97415 0.94010 0.97335 1.19114 0.88498 0.96452 0.96858 1.21249 0.92950 0.94434 1.46573 0.92732 1.25025 0.98292 0.95642 0.95592 1.69966 1.13053 1.22602 1.47870 0.86652 0.80494 0.83471 0.77700 1.20837 1.21321 1.19955 1.21650 0.92094 0.98944 1.01954 1.22168 0.98164 0.95827 0.90759 1.20709 0.91933 0.98314 1.06256 0.91125 0.91450 0.91602 0.86108 0.85641 0.84572 0.75610 0.90706 0.92035 0.90539 0.90793 0.95309 0.90694 0.91648 0.93103 0.96779 0.96432 0.93115 0.92161 0.91332 0.95580 0.91558 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.00 0.36 -0.27 16 2 C -0.07 -0.59 5.88 -104.65 -0.62 -1.20 16 3 C -0.14 -1.24 9.70 -39.55 -0.38 -1.62 16 4 C -0.09 -0.97 10.04 -39.61 -0.40 -1.36 16 5 C -0.13 -1.54 8.66 -39.39 -0.34 -1.89 16 6 C 0.16 1.68 6.31 -83.70 -0.53 1.16 16 7 N -0.68 -6.53 5.35 -9.86 -0.05 -6.58 16 8 C 0.52 6.48 5.72 -10.98 -0.06 6.41 16 9 O -0.49 -8.09 13.29 5.55 0.07 -8.01 16 10 C 0.07 0.78 2.47 -68.86 -0.17 0.61 16 11 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 12 C -0.14 -1.37 8.74 37.16 0.32 -1.05 16 13 N -0.51 -7.66 4.22 -228.08 -0.96 -8.62 16 14 C 0.05 0.80 5.08 -3.84 -0.02 0.78 16 15 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 16 C -0.08 -1.69 2.20 -90.50 -0.20 -1.89 16 17 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 18 C -0.51 -14.40 8.45 -34.44 -0.29 -14.69 16 19 H 0.05 1.48 7.08 -52.49 -0.37 1.10 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 22 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.11 -2.00 5.38 -26.65 -0.14 -2.15 16 27 C 0.06 0.92 5.18 -3.84 -0.02 0.90 16 28 C -0.15 -1.34 9.61 -39.39 -0.38 -1.72 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.90 6.31 -52.49 -0.33 1.56 16 35 H 0.41 2.52 8.81 -40.82 -0.36 2.16 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.67 6.20 -51.93 -0.32 0.35 16 39 H 0.07 0.96 5.86 -51.93 -0.30 0.66 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 1.05 6.41 -51.93 -0.33 0.72 16 51 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -33.30 399.55 -11.13 -44.43 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.70 Total: 0.38 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -3.22 Total: -17.87 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.28 Total: -41.68 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.30 -11.13 -44.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516647855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.817 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds