Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38301 * 119.96761 * 2 1 4 4 C 1.38256 * 120.14458 * 180.02562 * 3 2 1 5 5 C 1.38141 * 120.07032 * 359.95467 * 4 3 2 6 6 C 1.38850 * 119.92579 * 0.02562 * 5 4 3 7 7 N 1.39922 * 120.07020 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00002 * 32.04827 * 7 6 5 9 9 O 1.21289 * 119.99700 * 4.85909 * 8 7 6 10 10 C 1.50704 * 120.00101 * 184.86015 * 8 7 6 11 11 H 1.08994 * 109.46887 * 33.44506 * 10 8 7 12 12 C 1.52996 * 109.46862 * 273.43997 * 10 8 7 13 13 N 1.46905 * 109.46876 * 153.44356 * 10 8 7 14 14 C 1.46846 * 110.99664 * 173.45760 * 13 10 8 15 15 C 1.53036 * 109.52335 * 185.83709 * 14 13 10 16 16 C 1.53124 * 109.27877 * 300.82521 * 15 14 13 17 17 C 1.52995 * 109.52186 * 177.55718 * 16 15 14 18 18 C 1.50706 * 109.47349 * 65.32000 * 17 16 15 19 19 H 1.07999 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99993 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00439 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99609 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46813 * 89.99884 * 22 20 18 24 24 H 1.48497 * 109.46923 * 209.99304 * 22 20 18 25 25 H 1.48497 * 109.47261 * 329.99782 * 22 20 18 26 26 C 1.53114 * 109.16016 * 57.65389 * 16 15 14 27 27 C 1.46840 * 110.99998 * 297.66838 * 13 10 8 28 28 C 1.38095 * 119.96393 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47252 * 270.02221 * 1 2 3 30 30 H 1.09007 * 109.47029 * 30.02162 * 1 2 3 31 31 H 1.09004 * 109.47217 * 150.01516 * 1 2 3 32 32 H 1.08001 * 119.92760 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.96809 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.03689 * 180.02562 * 5 4 3 35 35 H 0.97002 * 120.00352 * 212.05282 * 7 6 5 36 36 H 1.09001 * 109.47615 * 300.00248 * 12 10 8 37 37 H 1.09005 * 109.47197 * 60.00573 * 12 10 8 38 38 H 1.09000 * 109.46859 * 179.97438 * 12 10 8 39 39 H 1.08997 * 109.46586 * 305.85331 * 14 13 10 40 40 H 1.08999 * 109.46150 * 65.82538 * 14 13 10 41 41 H 1.08998 * 109.50500 * 180.88659 * 15 14 13 42 42 H 1.09003 * 109.50386 * 60.76087 * 15 14 13 43 43 H 1.08995 * 109.52060 * 297.74519 * 16 15 14 44 44 H 1.08999 * 109.47384 * 185.31334 * 17 16 15 45 45 H 1.08998 * 109.47833 * 305.31604 * 17 16 15 46 46 H 0.97003 * 120.00416 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.50091 * 182.41159 * 26 16 15 48 48 H 1.08993 * 109.50758 * 62.28573 * 26 16 15 49 49 H 1.09005 * 109.46605 * 294.17927 * 27 13 10 50 50 H 1.09004 * 109.46672 * 54.14844 * 27 13 10 51 51 H 1.08004 * 120.03474 * 359.71831 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 -0.0005 5 6 4.2762 0.0090 -0.0001 6 6 3.5856 -1.1955 0.0003 7 7 4.2874 -2.4060 0.0012 8 6 5.4810 -2.4925 0.6211 9 8 5.9062 -1.5482 1.2525 10 6 6.2874 -3.7623 0.5297 11 1 6.1258 -4.2260 -0.4434 12 6 5.8476 -4.7262 1.6335 13 7 7.7135 -3.4495 0.6923 14 6 8.5165 -4.6769 0.7640 15 6 9.9709 -4.3189 1.0780 16 6 10.5121 -3.3957 -0.0173 17 6 11.9462 -2.9852 0.3225 18 6 12.8382 -4.1995 0.2868 19 1 12.4235 -5.1672 0.0463 20 6 14.1834 -4.0750 0.5623 21 7 14.6883 -2.8967 0.8557 22 14 15.2888 -5.5803 0.5188 23 1 15.8385 -5.7512 -0.8501 24 1 16.4051 -5.4027 1.4818 25 1 14.5015 -6.7835 0.8899 26 6 9.6295 -2.1475 -0.1039 27 6 8.1850 -2.5686 -0.3837 28 6 2.1967 -1.1964 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6561 2.1324 0.0004 33 1 4.1169 2.1396 -0.0010 34 1 5.3561 0.0130 -0.0001 35 1 3.9149 -3.1830 -0.4443 36 1 6.0092 -4.2625 2.6066 37 1 4.7894 -4.9583 1.5128 38 1 6.4305 -5.6449 1.5671 39 1 8.1238 -5.3225 1.5494 40 1 8.4692 -5.1982 -0.1921 41 1 10.5698 -5.2288 1.1156 42 1 10.0207 -3.8096 2.0404 43 1 10.4987 -3.9184 -0.9737 44 1 12.2976 -2.2550 -0.4064 45 1 11.9718 -2.5449 1.3192 46 1 15.6348 -2.8091 1.0492 47 1 9.9843 -1.5063 -0.9108 48 1 9.6739 -1.6042 0.8399 49 1 8.1392 -3.0998 -1.3345 50 1 7.5515 -1.6828 -0.4319 51 1 1.6567 -2.1317 0.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516647855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = -40.803043 kcal Electronic energy + Delta-G solvation = -28183.090503 eV Core-core repulsion = 24466.582474 eV Total energy + Delta-G solvation = -3716.508030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83915 -40.32498 -39.26226 -36.47890 -35.96190 -34.58916 -33.36056 -32.26827 -31.69760 -30.50817 -29.05188 -27.73180 -26.17877 -25.42199 -23.67361 -23.30691 -22.95397 -21.89565 -20.84970 -20.48943 -18.69138 -18.41920 -18.02074 -17.25022 -16.94173 -16.47410 -16.42907 -15.89327 -15.70312 -15.28512 -15.17158 -14.81685 -14.74169 -14.58570 -14.50520 -14.20207 -14.11136 -13.84415 -13.44373 -13.26638 -13.13329 -13.01950 -12.94888 -12.74490 -12.63771 -12.58556 -12.44377 -12.40386 -12.14464 -12.07211 -12.04550 -11.67576 -11.36415 -11.25572 -10.90837 -10.78407 -10.63348 -10.51039 -9.67775 -9.24670 -9.07070 -8.16283 -6.26602 0.29321 0.43083 1.40134 1.41904 1.52725 1.54937 1.89561 2.42450 2.83234 2.88579 3.16688 3.55994 3.93023 3.93872 3.95039 3.99302 4.02224 4.11716 4.14958 4.25290 4.34951 4.43973 4.47610 4.52064 4.57185 4.58319 4.69458 4.71844 4.78936 4.82838 4.87689 4.89443 4.95446 4.98244 5.04328 5.12954 5.23380 5.25759 5.34036 5.35895 5.41421 5.44079 5.46166 5.56409 5.58548 5.68198 5.79681 5.88148 6.03532 6.10470 6.12033 6.29265 6.45173 6.89711 7.13317 7.41868 8.95906 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.002137 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.325062 B =13101.944065 C =13827.084356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.157 4.157 6 C 0.140 3.860 7 N -0.663 5.663 8 C 0.516 3.484 9 O -0.539 6.539 10 C 0.070 3.930 11 H 0.090 0.910 12 C -0.141 4.141 13 N -0.536 5.536 14 C 0.065 3.935 15 C -0.095 4.095 16 C -0.072 4.072 17 C 0.033 3.967 18 C -0.527 4.527 19 H 0.066 0.934 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.259 1.259 26 C -0.104 4.104 27 C 0.071 3.929 28 C -0.148 4.148 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.427 0.573 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.056 0.944 44 H -0.017 1.017 45 H -0.017 1.017 46 H 0.261 0.739 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.062 0.938 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.940 -1.322 -4.179 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.162 4.162 4 C -0.127 4.127 5 C -0.177 4.177 6 C 0.045 3.955 7 N -0.310 5.310 8 C 0.304 3.696 9 O -0.414 6.414 10 C -0.042 4.042 11 H 0.107 0.893 12 C -0.199 4.199 13 N -0.262 5.262 14 C -0.062 4.062 15 C -0.133 4.133 16 C -0.091 4.091 17 C -0.004 4.004 18 C -0.565 4.565 19 H 0.084 0.916 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.183 1.183 26 C -0.142 4.142 27 C -0.057 4.057 28 C -0.169 4.169 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.266 0.734 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -32.371 -0.382 -3.240 32.535 hybrid contribution 1.414 -0.625 -0.736 1.713 sum -30.957 -1.007 -3.976 31.228 Atomic orbital electron populations 1.20840 0.88649 1.04035 1.03213 1.20111 0.97646 0.92153 0.97361 1.21312 0.93618 0.98913 1.02351 1.21230 0.95106 0.97581 0.98750 1.21169 1.00139 0.92621 1.03809 1.17904 0.91702 0.85604 1.00262 1.43480 1.20111 1.12463 1.54958 1.21115 0.81085 0.89950 0.77474 1.90737 1.69795 1.40324 1.40493 1.21652 0.88056 0.92370 1.02075 0.89274 1.21897 1.03088 0.98221 0.96649 1.61601 1.01061 1.16887 1.46682 1.22208 0.92379 0.90175 1.01405 1.21437 0.94693 0.99356 0.97826 1.21080 0.94443 0.95404 0.98171 1.19012 0.92143 0.95317 0.93955 1.21644 0.93531 0.95197 1.46080 0.91616 1.26032 1.00194 0.99021 0.95097 1.70127 1.13515 1.25232 1.49007 0.85450 0.78137 0.79541 0.77936 1.19923 1.21180 1.18299 1.21536 0.94239 0.97743 1.00664 1.21943 0.95544 0.96340 0.91848 1.21018 0.90997 0.99810 1.05027 0.90363 0.90387 0.90196 0.83943 0.85104 0.87518 0.73414 0.92947 0.88899 0.89294 0.88274 0.93572 0.91595 0.93931 0.92601 0.99883 0.99894 0.93028 0.92384 0.93782 0.93868 0.91940 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.23 0.71 -0.14 16 2 C -0.07 -1.03 5.88 -19.88 -0.12 -1.15 16 3 C -0.14 -2.34 9.70 22.29 0.22 -2.12 16 4 C -0.11 -2.26 10.04 22.25 0.22 -2.03 16 5 C -0.16 -3.97 8.66 22.39 0.19 -3.77 16 6 C 0.14 2.89 6.31 38.15 0.24 3.13 16 7 N -0.66 -11.60 5.35 -303.50 -1.62 -13.22 16 8 C 0.52 12.50 5.72 87.66 0.50 13.01 16 9 O -0.54 -18.52 13.29 -3.06 -0.04 -18.56 16 10 C 0.07 1.43 2.47 44.17 0.11 1.54 16 11 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 12 C -0.14 -2.23 8.74 71.98 0.63 -1.60 16 13 N -0.54 -15.43 4.22 -875.52 -3.70 -19.13 16 14 C 0.07 1.80 5.08 86.33 0.44 2.24 16 15 C -0.10 -3.61 5.15 30.65 0.16 -3.45 16 16 C -0.07 -3.09 2.20 -10.72 -0.02 -3.11 16 17 C 0.03 1.81 4.45 29.85 0.13 1.94 16 18 C -0.53 -30.20 8.45 25.60 0.22 -29.99 16 19 H 0.07 3.55 7.08 -2.91 -0.02 3.53 16 20 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 21 N -0.94 -59.03 13.29 21.44 0.28 -58.74 16 22 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 C -0.10 -4.02 5.38 30.65 0.16 -3.86 16 27 C 0.07 2.22 5.18 86.33 0.45 2.67 16 28 C -0.15 -2.26 9.61 22.39 0.22 -2.05 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.46 8.09 -2.38 -0.02 0.44 16 31 H 0.08 0.42 8.08 -2.38 -0.02 0.40 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.11 3.28 6.31 -2.91 -0.02 3.26 16 35 H 0.43 3.90 8.81 -92.71 -0.82 3.09 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 1.20 6.20 -2.39 -0.01 1.18 16 39 H 0.10 2.28 5.86 -2.39 -0.01 2.26 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 2.58 7.05 -2.39 -0.02 2.57 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.06 2.03 6.41 -2.39 -0.02 2.01 16 51 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.23 399.55 1.96 -75.27 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.09 Total: 16.10 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.92 Total: -28.67 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -5.03 Total: -91.09 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.04 Total: -18.56 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.23 1.96 -75.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516647855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds