Wall clock time and date at job start Tue Mar 31 2020 15:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 108.85079 * 2 1 4 4 N 1.46506 * 109.46983 * 60.00006 * 3 2 1 5 5 C 1.34771 * 119.99755 * 179.97438 * 4 3 2 6 6 O 1.21575 * 120.00554 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99802 * 180.02562 * 5 4 3 8 8 C 1.39241 * 120.00338 * 185.35467 * 7 5 4 9 9 C 1.39480 * 119.83686 * 213.12357 * 8 7 5 10 10 C 1.36378 * 120.17038 * 179.71303 * 9 8 7 11 11 C 1.40863 * 119.82403 * 0.57786 * 10 9 8 12 12 C 1.41161 * 120.16151 * 179.67748 * 11 10 9 13 13 H 1.08007 * 119.99762 * 209.78361 * 12 11 10 14 14 C 1.39889 * 120.00058 * 29.77684 * 12 11 10 15 15 N 1.30880 * 120.00111 * 10.61717 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 190.60982 * 14 12 11 17 17 H 1.48500 * 109.47041 * 90.00100 * 16 14 12 18 18 H 1.48502 * 109.47196 * 210.00069 * 16 14 12 19 19 H 1.48501 * 109.47165 * 330.00022 * 16 14 12 20 20 C 1.40874 * 119.67621 * 359.69495 * 11 10 9 21 21 C 1.36370 * 119.82538 * 0.02562 * 20 11 10 22 22 C 1.54064 * 108.87702 * 118.55832 * 2 1 3 23 23 C 1.54005 * 112.85115 * 78.87152 * 22 2 1 24 24 C 1.50470 * 112.54624 * 318.43388 * 23 22 2 25 25 C 1.54243 * 108.52637 * 94.07441 * 24 23 22 26 26 C 1.45543 * 112.40079 * 280.02148 * 25 24 23 27 27 C 1.50470 * 108.87707 * 241.44580 * 2 1 3 28 28 H 1.08996 * 109.47363 * 46.03273 * 1 2 3 29 29 H 1.09006 * 109.46813 * 166.03139 * 1 2 3 30 30 H 1.09000 * 109.46853 * 286.02865 * 1 2 3 31 31 H 1.08998 * 109.46877 * 300.00411 * 3 2 1 32 32 H 1.08991 * 109.46940 * 179.97438 * 3 2 1 33 33 H 0.97003 * 119.99755 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00212 * 5.35994 * 7 5 4 35 35 H 1.08000 * 119.91530 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.08962 * 180.25689 * 10 9 8 37 37 H 0.97000 * 119.99734 * 180.02562 * 15 14 12 38 38 H 1.07994 * 120.08579 * 179.97438 * 20 11 10 39 39 H 1.08001 * 119.91243 * 180.02562 * 21 20 11 40 40 H 1.09009 * 108.81179 * 199.82177 * 22 2 1 41 41 H 1.08991 * 108.81578 * 318.10453 * 22 2 1 42 42 H 1.09003 * 108.90778 * 197.60765 * 23 22 2 43 43 H 1.08989 * 108.71526 * 79.13486 * 23 22 2 44 44 H 1.09007 * 109.63118 * 334.36036 * 24 23 22 45 45 H 1.09001 * 109.63183 * 213.78397 * 24 23 22 46 46 H 1.09002 * 108.89525 * 159.26798 * 25 24 23 47 47 H 1.08994 * 108.89590 * 40.77629 * 25 24 23 48 48 H 1.09000 * 108.89354 * 301.18237 * 26 25 24 49 49 H 1.09002 * 108.89414 * 182.69574 * 26 25 24 50 50 H 1.08992 * 109.63295 * 93.18265 * 27 2 1 51 51 H 1.09000 * 109.63022 * 213.77016 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4480 0.0000 4 7 1.5286 2.1333 1.1962 5 6 1.8406 3.4268 1.4097 6 8 2.5331 4.0253 0.6095 7 7 1.3849 4.0571 2.5104 8 6 1.6126 5.4207 2.6764 9 6 1.8028 5.9418 3.9562 10 6 2.0321 7.2754 4.1261 11 6 2.0644 8.1290 3.0061 12 6 2.2944 9.5115 3.1743 13 1 1.8697 10.2184 2.4769 14 6 3.0722 9.9660 4.2446 15 7 3.7554 9.1137 4.9654 16 14 3.1358 11.7896 4.6447 17 1 2.0578 12.1223 5.6104 18 1 4.4547 12.1196 5.2421 19 1 2.9454 12.5765 3.3999 20 6 1.8657 7.5962 1.7172 21 6 1.6432 6.2597 1.5626 22 6 2.0285 -0.6969 1.2804 23 6 1.9628 -2.2329 1.1896 24 6 0.6984 -2.7185 0.5342 25 6 0.9742 -2.9261 -0.9691 26 6 0.9371 -1.6782 -1.7173 27 6 2.0169 -0.6805 -1.2506 28 1 -0.3634 0.7134 -0.7396 29 1 -0.3633 -0.9973 -0.2481 30 1 -0.3633 0.2838 0.9877 31 1 1.6554 1.9578 -0.8899 32 1 3.1142 1.4597 0.0005 33 1 0.9763 1.6557 1.8349 34 1 0.8984 3.5608 3.1871 35 1 1.7735 5.2867 4.8143 36 1 2.1833 7.6768 5.1172 37 1 4.2945 9.4288 5.7077 38 1 1.8887 8.2447 0.8539 39 1 1.4911 5.8497 0.5751 40 1 3.0607 -0.3984 1.4640 41 1 1.4156 -0.3696 2.1201 42 1 2.0209 -2.6490 2.1954 43 1 2.8173 -2.5859 0.6125 44 1 -0.0893 -1.9761 0.6629 45 1 0.3922 -3.6630 0.9840 46 1 0.2233 -3.6037 -1.3755 47 1 1.9579 -3.3800 -1.0882 48 1 -0.0441 -1.2205 -1.5920 49 1 1.0907 -1.8957 -2.7743 50 1 2.1893 0.0629 -2.0287 51 1 2.9429 -1.2154 -1.0396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537342845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:57 Heat of formation + Delta-G solvation = -4.064177 kcal Electronic energy + Delta-G solvation = -28163.264118 eV Core-core repulsion = 24448.349205 eV Total energy + Delta-G solvation = -3714.914913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83026 -39.58825 -37.39566 -35.41337 -34.28239 -33.03653 -32.72818 -32.22373 -29.52266 -28.80805 -28.32339 -26.58780 -25.28590 -24.59692 -22.71796 -21.56203 -20.80495 -20.37921 -20.00963 -18.50047 -17.90749 -17.21050 -16.77053 -16.09147 -15.86184 -15.31877 -15.11619 -14.66742 -14.61902 -14.27921 -13.97571 -13.86352 -13.38412 -13.27284 -12.94654 -12.87815 -12.65838 -12.60015 -12.35402 -12.09229 -12.01072 -11.75569 -11.55279 -11.29684 -11.10852 -11.04159 -10.95155 -10.82543 -10.69416 -10.62865 -10.54463 -10.43339 -9.99125 -9.92433 -9.47286 -9.45353 -9.19182 -8.87959 -8.77581 -7.48341 -6.82985 -6.62653 -4.24658 2.72243 3.10306 3.11857 3.14144 3.15895 3.23396 3.79962 4.00024 4.26299 4.32137 4.38502 4.65919 4.72896 4.74232 4.77083 4.80644 4.94555 4.99149 5.05403 5.28634 5.36971 5.43505 5.51550 5.60477 5.63732 5.72409 5.74465 5.76677 5.79012 5.86321 5.91179 5.93656 5.96144 6.01185 6.07775 6.18996 6.24470 6.26570 6.47824 6.69162 6.83393 6.88580 7.10730 7.20429 7.33695 7.44462 7.68452 7.93381 8.02927 8.12152 8.35528 8.56032 8.67647 8.96462 8.99084 9.18823 10.30506 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.799898 B =14238.446683 C =14528.904789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C 0.150 3.850 4 N -0.750 5.750 5 C 0.693 3.307 6 O -0.579 6.579 7 N -0.669 5.669 8 C 0.022 3.978 9 C -0.121 4.121 10 C -0.144 4.144 11 C 0.102 3.898 12 C -0.461 4.461 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.804 5.804 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.208 4.208 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.115 4.115 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.138 4.138 27 C -0.105 4.105 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.391 0.609 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.278 0.722 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 -23.115 -6.140 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.066 4.066 3 C 0.025 3.975 4 N -0.408 5.408 5 C 0.393 3.607 6 O -0.456 6.456 7 N -0.314 5.314 8 C -0.071 4.071 9 C -0.141 4.141 10 C -0.164 4.164 11 C 0.099 3.901 12 C -0.491 4.491 13 H 0.094 0.906 14 C -0.144 4.144 15 N -0.431 5.431 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.228 4.228 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.177 4.177 25 C -0.154 4.154 26 C -0.175 4.175 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.225 0.775 34 H 0.223 0.777 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.660 -22.567 -6.718 24.216 hybrid contribution -0.144 0.293 0.947 1.002 sum -5.804 -22.273 -5.771 23.730 Atomic orbital electron populations 1.22815 0.94798 1.03371 1.01862 1.20487 0.96255 0.94023 0.95880 1.21370 0.98787 0.90039 0.87264 1.45146 1.57936 1.10901 1.26777 1.16034 0.80547 0.81076 0.83013 1.90919 1.42007 1.65631 1.47015 1.42136 1.58552 1.08952 1.21800 1.17002 1.15576 0.80172 0.94311 1.20210 1.04033 0.96238 0.93640 1.20905 1.04148 0.91780 0.99571 1.17667 0.88436 0.93551 0.90442 1.19511 1.27802 0.92569 1.09254 0.90555 1.25881 0.93679 0.99972 0.94909 1.69820 1.21349 1.36191 1.15744 0.86270 0.78129 0.82522 0.79482 1.19455 1.20412 1.18731 1.20712 1.11817 0.93813 0.96508 1.20281 1.00407 0.93083 0.96456 1.22006 1.01519 0.94638 0.96325 1.21282 0.98130 0.95363 1.00526 1.21797 0.99153 1.01550 0.95220 1.20473 1.01685 0.97753 0.95456 1.20781 1.00979 0.96233 0.99467 1.21304 0.98668 0.98144 0.96144 0.92409 0.88811 0.92999 0.91814 0.91951 0.77549 0.77722 0.89236 0.86033 0.91091 0.88711 0.87920 0.91826 0.92243 0.92461 0.92206 0.89410 0.92385 0.92626 0.92431 0.89923 0.92497 0.91355 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 5.94 37.16 0.22 -1.01 16 2 C -0.07 -0.52 0.51 -155.21 -0.08 -0.60 16 3 C 0.15 1.72 4.13 -4.04 -0.02 1.71 16 4 N -0.75 -9.59 5.02 -65.23 -0.33 -9.91 16 5 C 0.69 12.69 8.29 -86.92 -0.72 11.97 16 6 O -0.58 -13.34 14.00 5.30 0.07 -13.26 16 7 N -0.67 -12.17 5.32 -14.10 -0.07 -12.24 16 8 C 0.02 0.51 6.29 -83.57 -0.53 -0.02 16 9 C -0.12 -2.82 9.89 -39.79 -0.39 -3.21 16 10 C -0.14 -3.77 8.59 -39.26 -0.34 -4.11 16 11 C 0.10 2.79 5.54 -106.80 -0.59 2.19 16 12 C -0.46 -12.51 9.04 -37.86 -0.34 -12.86 16 13 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 14 C 0.07 1.84 5.25 -17.34 -0.09 1.75 16 15 N -0.80 -21.31 10.89 55.54 0.61 -20.71 16 16 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 C -0.21 -5.44 9.74 -39.26 -0.38 -5.82 16 21 C -0.08 -2.04 8.57 -39.79 -0.34 -2.38 16 22 C -0.11 -0.82 4.37 -25.65 -0.11 -0.93 16 23 C -0.12 -0.76 5.31 -27.47 -0.15 -0.91 16 24 C -0.14 -0.83 5.56 -27.34 -0.15 -0.98 16 25 C -0.12 -0.68 5.21 -29.60 -0.15 -0.83 16 26 C -0.14 -0.86 5.14 -29.60 -0.15 -1.01 16 27 C -0.10 -0.77 5.02 -27.35 -0.14 -0.90 16 28 H 0.06 0.46 8.05 -51.93 -0.42 0.05 16 29 H 0.09 0.57 2.67 -51.93 -0.14 0.43 16 30 H 0.05 0.36 6.88 -51.93 -0.36 0.01 16 31 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 32 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 33 H 0.39 3.87 6.43 -40.82 -0.26 3.61 16 34 H 0.39 5.54 8.83 -40.82 -0.36 5.18 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.12 3.26 6.28 -52.49 -0.33 2.93 16 37 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 38 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.10 2.54 6.39 -52.49 -0.34 2.20 16 40 H 0.06 0.56 7.97 -51.92 -0.41 0.14 16 41 H 0.06 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.41 6.63 -51.94 -0.34 0.06 16 44 H 0.09 0.52 4.25 -51.93 -0.22 0.30 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.35 7.47 -51.93 -0.39 -0.04 16 48 H 0.08 0.50 4.83 -51.93 -0.25 0.25 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 51 H 0.07 0.50 6.97 -51.93 -0.36 0.14 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -31.30 377.71 -11.37 -42.67 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.86 Total: 11.60 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -4.45 Total: -17.96 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.20 Total: -42.87 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.30 -11.37 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537342845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.607 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds