Wall clock time and date at job start Tue Mar 31 2020 15:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 108.85079 * 2 1 4 4 N 1.46506 * 109.46983 * 60.00006 * 3 2 1 5 5 C 1.34771 * 119.99755 * 179.97438 * 4 3 2 6 6 O 1.21575 * 120.00554 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99802 * 180.02562 * 5 4 3 8 8 C 1.39241 * 120.00338 * 185.35467 * 7 5 4 9 9 C 1.39480 * 119.83686 * 213.12357 * 8 7 5 10 10 C 1.36378 * 120.17038 * 179.71303 * 9 8 7 11 11 C 1.40863 * 119.82403 * 0.57786 * 10 9 8 12 12 C 1.41161 * 120.16151 * 179.67748 * 11 10 9 13 13 H 1.08007 * 119.99762 * 209.78361 * 12 11 10 14 14 C 1.39889 * 120.00058 * 29.77684 * 12 11 10 15 15 N 1.30880 * 120.00111 * 10.61717 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 190.60982 * 14 12 11 17 17 H 1.48500 * 109.47041 * 90.00100 * 16 14 12 18 18 H 1.48502 * 109.47196 * 210.00069 * 16 14 12 19 19 H 1.48501 * 109.47165 * 330.00022 * 16 14 12 20 20 C 1.40874 * 119.67621 * 359.69495 * 11 10 9 21 21 C 1.36370 * 119.82538 * 0.02562 * 20 11 10 22 22 C 1.54064 * 108.87702 * 118.55832 * 2 1 3 23 23 C 1.54005 * 112.85115 * 78.87152 * 22 2 1 24 24 C 1.50470 * 112.54624 * 318.43388 * 23 22 2 25 25 C 1.54243 * 108.52637 * 94.07441 * 24 23 22 26 26 C 1.45543 * 112.40079 * 280.02148 * 25 24 23 27 27 C 1.50470 * 108.87707 * 241.44580 * 2 1 3 28 28 H 1.08996 * 109.47363 * 46.03273 * 1 2 3 29 29 H 1.09006 * 109.46813 * 166.03139 * 1 2 3 30 30 H 1.09000 * 109.46853 * 286.02865 * 1 2 3 31 31 H 1.08998 * 109.46877 * 300.00411 * 3 2 1 32 32 H 1.08991 * 109.46940 * 179.97438 * 3 2 1 33 33 H 0.97003 * 119.99755 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00212 * 5.35994 * 7 5 4 35 35 H 1.08000 * 119.91530 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.08962 * 180.25689 * 10 9 8 37 37 H 0.97000 * 119.99734 * 180.02562 * 15 14 12 38 38 H 1.07994 * 120.08579 * 179.97438 * 20 11 10 39 39 H 1.08001 * 119.91243 * 180.02562 * 21 20 11 40 40 H 1.09009 * 108.81179 * 199.82177 * 22 2 1 41 41 H 1.08991 * 108.81578 * 318.10453 * 22 2 1 42 42 H 1.09003 * 108.90778 * 197.60765 * 23 22 2 43 43 H 1.08989 * 108.71526 * 79.13486 * 23 22 2 44 44 H 1.09007 * 109.63118 * 334.36036 * 24 23 22 45 45 H 1.09001 * 109.63183 * 213.78397 * 24 23 22 46 46 H 1.09002 * 108.89525 * 159.26798 * 25 24 23 47 47 H 1.08994 * 108.89590 * 40.77629 * 25 24 23 48 48 H 1.09000 * 108.89354 * 301.18237 * 26 25 24 49 49 H 1.09002 * 108.89414 * 182.69574 * 26 25 24 50 50 H 1.08992 * 109.63295 * 93.18265 * 27 2 1 51 51 H 1.09000 * 109.63022 * 213.77016 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4480 0.0000 4 7 1.5286 2.1333 1.1962 5 6 1.8406 3.4268 1.4097 6 8 2.5331 4.0253 0.6095 7 7 1.3849 4.0571 2.5104 8 6 1.6126 5.4207 2.6764 9 6 1.8028 5.9418 3.9562 10 6 2.0321 7.2754 4.1261 11 6 2.0644 8.1290 3.0061 12 6 2.2944 9.5115 3.1743 13 1 1.8697 10.2184 2.4769 14 6 3.0722 9.9660 4.2446 15 7 3.7554 9.1137 4.9654 16 14 3.1358 11.7896 4.6447 17 1 2.0578 12.1223 5.6104 18 1 4.4547 12.1196 5.2421 19 1 2.9454 12.5765 3.3999 20 6 1.8657 7.5962 1.7172 21 6 1.6432 6.2597 1.5626 22 6 2.0285 -0.6969 1.2804 23 6 1.9628 -2.2329 1.1896 24 6 0.6984 -2.7185 0.5342 25 6 0.9742 -2.9261 -0.9691 26 6 0.9371 -1.6782 -1.7173 27 6 2.0169 -0.6805 -1.2506 28 1 -0.3634 0.7134 -0.7396 29 1 -0.3633 -0.9973 -0.2481 30 1 -0.3633 0.2838 0.9877 31 1 1.6554 1.9578 -0.8899 32 1 3.1142 1.4597 0.0005 33 1 0.9763 1.6557 1.8349 34 1 0.8984 3.5608 3.1871 35 1 1.7735 5.2867 4.8143 36 1 2.1833 7.6768 5.1172 37 1 4.2945 9.4288 5.7077 38 1 1.8887 8.2447 0.8539 39 1 1.4911 5.8497 0.5751 40 1 3.0607 -0.3984 1.4640 41 1 1.4156 -0.3696 2.1201 42 1 2.0209 -2.6490 2.1954 43 1 2.8173 -2.5859 0.6125 44 1 -0.0893 -1.9761 0.6629 45 1 0.3922 -3.6630 0.9840 46 1 0.2233 -3.6037 -1.3755 47 1 1.9579 -3.3800 -1.0882 48 1 -0.0441 -1.2205 -1.5920 49 1 1.0907 -1.8957 -2.7743 50 1 2.1893 0.0629 -2.0287 51 1 2.9429 -1.2154 -1.0396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537342845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:55 Heat of formation + Delta-G solvation = -21.086774 kcal Electronic energy + Delta-G solvation = -28164.002273 eV Core-core repulsion = 24448.349205 eV Total energy + Delta-G solvation = -3715.653068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.73257 -40.90323 -39.18639 -36.54135 -35.97243 -34.75059 -33.41058 -33.18607 -31.46701 -30.66515 -28.91176 -27.72739 -26.39826 -25.76136 -23.70067 -23.14999 -22.55808 -21.62998 -20.89685 -19.62749 -19.17640 -18.90867 -18.23339 -17.09768 -16.86385 -16.70781 -16.49390 -15.81696 -15.67523 -15.44933 -15.28456 -15.04656 -14.76009 -14.47744 -14.08147 -13.94702 -13.85567 -13.64260 -13.47201 -13.38872 -13.22765 -12.92735 -12.87299 -12.78212 -12.69406 -12.47299 -12.18006 -11.79886 -11.68142 -11.42213 -11.38817 -11.25026 -11.16200 -11.09688 -11.07871 -10.95974 -10.69378 -10.47197 -10.04792 -9.45828 -8.73896 -8.53577 -6.27020 0.86381 1.14795 1.40150 1.48941 1.53704 1.81498 2.22005 2.25317 2.81021 3.41620 3.60469 3.69651 3.73366 3.78762 4.10723 4.18233 4.26457 4.37530 4.39738 4.41753 4.49166 4.51116 4.65128 4.72941 4.76090 4.86518 4.88772 4.93440 5.02851 5.10489 5.12407 5.16118 5.16793 5.20022 5.29518 5.32381 5.37219 5.39548 5.42774 5.44274 5.45645 5.51395 5.52102 5.64801 5.66738 5.75648 5.81687 6.05246 6.12341 6.26126 6.40391 6.68168 6.96464 7.01987 7.17920 7.68373 8.40653 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.799898 B =14238.446683 C =14528.904789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C 0.149 3.851 4 N -0.723 5.723 5 C 0.690 3.310 6 O -0.628 6.628 7 N -0.659 5.659 8 C 0.038 3.962 9 C -0.117 4.117 10 C -0.161 4.161 11 C 0.070 3.930 12 C -0.498 4.498 13 H 0.073 0.927 14 C 0.030 3.970 15 N -0.835 5.835 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.225 4.225 21 C -0.093 4.093 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.116 4.116 26 C -0.134 4.134 27 C -0.106 4.106 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.409 0.591 34 H 0.413 0.587 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 -24.984 -5.312 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.054 4.054 3 C 0.025 3.975 4 N -0.381 5.381 5 C 0.391 3.609 6 O -0.508 6.508 7 N -0.307 5.307 8 C -0.056 4.056 9 C -0.138 4.138 10 C -0.181 4.181 11 C 0.068 3.932 12 C -0.528 4.528 13 H 0.091 0.909 14 C -0.183 4.183 15 N -0.463 5.463 16 Si 0.808 3.192 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.246 4.246 21 C -0.114 4.114 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.176 4.176 25 C -0.153 4.153 26 C -0.171 4.171 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.247 0.753 34 H 0.250 0.750 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.708 -24.527 -5.873 26.097 hybrid contribution 0.173 0.686 0.615 0.938 sum -6.536 -23.841 -5.258 25.273 Atomic orbital electron populations 1.22844 0.93722 1.04222 1.02047 1.20404 0.96969 0.91400 0.96604 1.21509 0.97936 0.92037 0.86047 1.44929 1.56887 1.08945 1.27296 1.16232 0.80070 0.82344 0.82253 1.90896 1.44206 1.67187 1.48548 1.41899 1.58807 1.07371 1.22645 1.17025 1.12968 0.82070 0.93538 1.20462 1.02633 0.95702 0.94987 1.20916 1.05345 0.93034 0.98770 1.17992 0.89632 0.94403 0.91218 1.19739 1.29486 0.92769 1.10792 0.90897 1.26743 0.92561 1.04893 0.94101 1.69871 1.21745 1.38403 1.16235 0.85134 0.78629 0.76198 0.79269 1.18351 1.19403 1.18595 1.20833 1.12723 0.94639 0.96369 1.20370 1.00929 0.92927 0.97142 1.22001 1.00776 0.95571 0.96075 1.21255 0.98532 0.94298 1.00905 1.21795 0.98688 1.01985 0.95116 1.20469 1.01874 0.97550 0.95447 1.20759 1.00508 0.96075 0.99733 1.21312 0.99222 0.98273 0.95606 0.93218 0.87201 0.92361 0.93037 0.93524 0.75342 0.74980 0.85732 0.87080 0.90294 0.88821 0.88159 0.93183 0.91513 0.92004 0.92526 0.89089 0.91654 0.91733 0.92717 0.89490 0.92201 0.92122 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 5.94 71.98 0.43 -1.64 16 2 C -0.05 -0.76 0.51 -52.64 -0.03 -0.79 16 3 C 0.15 3.33 4.13 86.38 0.36 3.69 16 4 N -0.72 -17.39 5.02 -478.55 -2.40 -19.79 16 5 C 0.69 24.65 8.29 179.06 1.48 26.13 16 6 O -0.63 -29.17 14.00 -3.95 -0.06 -29.22 16 7 N -0.66 -22.85 5.32 -316.80 -1.68 -24.53 16 8 C 0.04 1.73 6.29 38.56 0.24 1.97 16 9 C -0.12 -5.38 9.89 22.14 0.22 -5.16 16 10 C -0.16 -8.54 8.59 22.48 0.19 -8.35 16 11 C 0.07 3.97 5.54 -21.27 -0.12 3.85 16 12 C -0.50 -27.90 9.04 23.39 0.21 -27.69 16 13 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16 14 C 0.03 1.56 5.25 85.23 0.45 2.01 16 15 N -0.84 -44.86 10.89 21.82 0.24 -44.62 16 16 Si 0.99 39.44 29.57 68.60 2.03 41.47 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 C -0.23 -12.21 9.74 22.48 0.22 -11.99 16 21 C -0.09 -4.71 8.57 22.13 0.19 -4.52 16 22 C -0.11 -1.41 4.37 31.29 0.14 -1.28 16 23 C -0.11 -1.23 5.31 30.12 0.16 -1.07 16 24 C -0.14 -1.26 5.56 30.20 0.17 -1.09 16 25 C -0.12 -1.07 5.21 28.74 0.15 -0.92 16 26 C -0.13 -1.40 5.14 28.74 0.15 -1.25 16 27 C -0.11 -1.43 5.02 30.19 0.15 -1.28 16 28 H 0.05 0.70 8.05 -2.39 -0.02 0.68 16 29 H 0.11 1.01 2.67 -2.38 -0.01 1.00 16 30 H 0.06 0.63 6.88 -2.39 -0.02 0.62 16 31 H 0.05 1.31 8.04 -2.39 -0.02 1.29 16 32 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.41 6.98 6.43 -92.71 -0.60 6.39 16 34 H 0.41 10.49 8.83 -92.71 -0.82 9.67 16 35 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.11 6.08 6.28 -2.91 -0.02 6.06 16 37 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 38 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.10 5.07 6.39 -2.91 -0.02 5.05 16 40 H 0.05 0.81 7.97 -2.38 -0.02 0.80 16 41 H 0.07 0.79 6.86 -2.39 -0.02 0.77 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.67 6.63 -2.39 -0.02 0.65 16 44 H 0.09 0.77 4.25 -2.38 -0.01 0.76 16 45 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.05 0.55 7.47 -2.39 -0.02 0.54 16 48 H 0.09 0.84 4.83 -2.39 -0.01 0.83 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 51 H 0.07 0.92 6.97 -2.39 -0.02 0.91 16 Total: -1.00 -69.82 377.71 2.43 -67.39 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.45 Total: 38.69 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.76 Total: -29.39 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -3.85 Total: -88.94 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -69.82 2.43 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537342845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.302 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds