Wall clock time and date at job start Tue Mar 31 2020 15:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38280 * 119.96483 * 2 1 4 4 C 1.38279 * 120.14017 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.96180 * 179.97438 * 4 3 2 6 6 C 1.38109 * 120.07142 * 359.96380 * 4 3 2 7 7 C 1.38868 * 119.93240 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07680 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99425 * 33.28456 * 8 7 6 10 10 O 1.21288 * 120.00325 * 5.31227 * 9 8 7 11 11 C 1.50707 * 119.99790 * 185.31316 * 9 8 7 12 12 H 1.08997 * 109.46852 * 45.96254 * 11 9 8 13 13 C 1.53003 * 109.47120 * 285.96143 * 11 9 8 14 14 N 1.46896 * 109.46989 * 165.96156 * 11 9 8 15 15 C 1.46850 * 110.99665 * 72.34881 * 14 11 9 16 16 C 1.53045 * 109.52045 * 185.83958 * 15 14 11 17 17 C 1.53123 * 109.27508 * 300.81641 * 16 15 14 18 18 C 1.50700 * 109.52012 * 177.55953 * 17 16 15 19 19 H 1.07997 * 120.00449 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99944 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99895 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46851 * 89.99870 * 22 20 18 24 24 H 1.48502 * 109.46706 * 209.99524 * 22 20 18 25 25 H 1.48499 * 109.47284 * 329.99769 * 22 20 18 26 26 C 1.53119 * 109.16191 * 57.65781 * 17 16 15 27 27 C 1.46850 * 110.99865 * 196.55307 * 14 11 9 28 28 C 1.38118 * 119.96123 * 180.23637 * 2 1 3 29 29 H 1.09004 * 109.46918 * 90.00011 * 1 2 3 30 30 H 1.09005 * 109.47360 * 209.99476 * 1 2 3 31 31 H 1.09001 * 109.47322 * 329.99503 * 1 2 3 32 32 H 1.07997 * 119.92714 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47364 * 269.97794 * 5 4 3 34 34 H 1.08994 * 109.47264 * 29.98104 * 5 4 3 35 35 H 1.09003 * 109.46935 * 149.98311 * 5 4 3 36 36 H 1.08004 * 120.03570 * 179.97438 * 6 4 3 37 37 H 0.96995 * 120.00620 * 213.28674 * 8 7 6 38 38 H 1.09001 * 109.46711 * 60.00203 * 13 11 9 39 39 H 1.08994 * 109.47144 * 179.97438 * 13 11 9 40 40 H 1.09000 * 109.47256 * 300.00331 * 13 11 9 41 41 H 1.08998 * 109.46640 * 65.82635 * 15 14 11 42 42 H 1.09001 * 109.45370 * 305.84604 * 15 14 11 43 43 H 1.08995 * 109.50234 * 180.88103 * 16 15 14 44 44 H 1.08993 * 109.50653 * 60.75517 * 16 15 14 45 45 H 1.08993 * 109.52445 * 297.74965 * 17 16 15 46 46 H 0.97004 * 120.00069 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.50316 * 62.27958 * 26 17 16 48 48 H 1.08993 * 109.50717 * 182.40093 * 26 17 16 49 49 H 1.08997 * 109.46292 * 294.17922 * 27 14 11 50 50 H 1.09004 * 109.46129 * 54.14791 * 27 14 11 51 51 H 1.07997 * 120.04157 * 0.04536 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3291 2.5101 -0.0001 6 6 4.2761 0.0091 0.0018 7 6 3.5856 -1.1957 0.0020 8 7 4.2873 -2.4062 0.0039 9 6 5.4687 -2.4991 0.6460 10 8 5.8776 -1.5646 1.3021 11 6 6.2817 -3.7644 0.5485 12 1 6.3221 -4.0911 -0.4905 13 6 5.6313 -4.8555 1.4014 14 7 7.6442 -3.5095 1.0351 15 6 7.6609 -3.3533 2.4951 16 6 9.0644 -2.9465 2.9499 17 6 10.0662 -4.0224 2.5215 18 6 11.4583 -3.5990 2.9137 19 1 11.6143 -2.6571 3.4186 20 6 12.5329 -4.4147 2.6290 21 7 13.7478 -4.0450 2.9709 22 14 12.2632 -6.0442 1.7565 23 1 12.3472 -5.8392 0.2881 24 1 13.3063 -7.0119 2.1817 25 1 10.9218 -6.5768 2.1060 26 6 9.9943 -4.1998 1.0023 27 6 8.5638 -4.5702 0.6040 28 6 2.1968 -1.1966 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6559 2.1322 -0.0004 33 1 4.5103 2.8246 -1.0279 34 1 3.7369 3.2679 0.5127 35 1 5.2817 2.3837 0.5145 36 1 5.3562 0.0131 0.0018 37 1 3.9237 -3.1784 -0.4569 38 1 4.6204 -5.0445 1.0403 39 1 6.2191 -5.7706 1.3306 40 1 5.5908 -4.5287 2.4405 41 1 7.3866 -4.2979 2.9647 42 1 6.9472 -2.5824 2.7859 43 1 9.0804 -2.8458 4.0350 44 1 9.3340 -1.9951 2.4915 45 1 9.8198 -4.9649 3.0104 46 1 14.5039 -4.6186 2.7703 47 1 10.2785 -3.2680 0.5133 48 1 10.6746 -4.9943 0.6961 49 1 8.2852 -5.5090 1.0825 50 1 8.5060 -4.6832 -0.4786 51 1 1.6569 -2.1319 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541951642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:55 Heat of formation + Delta-G solvation = -10.110184 kcal Electronic energy + Delta-G solvation = -28665.826154 eV Core-core repulsion = 24950.649066 eV Total energy + Delta-G solvation = -3715.177087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.87468 -39.42032 -38.04400 -35.14902 -34.60882 -33.69824 -32.13196 -30.78984 -30.22297 -29.33749 -27.44031 -26.93538 -26.00666 -24.52741 -22.72883 -22.19922 -21.26580 -20.96070 -19.88910 -18.58828 -17.46504 -16.93854 -16.57573 -16.38649 -15.65881 -15.55727 -15.10030 -14.57612 -14.29746 -14.18921 -14.14668 -13.73062 -13.60683 -13.42805 -13.22034 -13.14463 -12.78171 -12.72351 -12.55896 -12.34891 -12.25020 -12.04673 -12.00540 -11.72496 -11.67655 -11.65196 -11.32095 -11.27484 -10.84869 -10.39839 -10.30310 -10.04615 -9.92366 -9.73006 -9.56450 -8.93979 -8.86263 -8.71429 -8.47456 -8.22277 -7.93972 -6.01263 -3.98988 1.11561 1.21424 2.55493 2.79955 3.28416 3.37831 3.40888 3.59479 4.17023 4.44912 4.47702 4.56010 4.63189 4.87700 4.92493 4.94838 5.05682 5.14044 5.18564 5.28240 5.28771 5.35781 5.40624 5.46382 5.48564 5.53575 5.56976 5.62650 5.73383 5.76280 5.77998 5.93890 5.96975 5.99353 6.15842 6.18787 6.22948 6.26752 6.38855 6.44635 6.50314 6.55146 6.78595 6.89959 6.91937 6.96207 7.18576 7.30652 7.41102 7.53507 7.69966 7.84781 8.08836 8.61044 9.04450 9.61656 11.12434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.002555 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.771834 B =10954.450642 C =11689.982334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.062 4.062 5 C -0.115 4.115 6 C -0.127 4.127 7 C 0.162 3.838 8 N -0.680 5.680 9 C 0.521 3.479 10 O -0.491 6.491 11 C 0.065 3.935 12 H 0.103 0.897 13 C -0.182 4.182 14 N -0.511 5.511 15 C 0.051 3.949 16 C -0.093 4.093 17 C 0.013 3.987 18 C -0.507 4.507 19 H 0.073 0.927 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.887 3.113 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.267 1.267 26 C -0.115 4.115 27 C 0.056 3.944 28 C -0.158 4.158 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.262 0.738 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.028 0.972 50 H 0.062 0.938 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.721 4.045 -9.465 29.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.160 4.160 4 C -0.063 4.063 5 C -0.172 4.172 6 C -0.147 4.147 7 C 0.067 3.933 8 N -0.327 5.327 9 C 0.308 3.692 10 O -0.362 6.362 11 C -0.048 4.048 12 H 0.121 0.879 13 C -0.241 4.241 14 N -0.236 5.236 15 C -0.076 4.076 16 C -0.131 4.131 17 C -0.006 4.006 18 C -0.545 4.545 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.718 3.282 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.193 1.193 26 C -0.153 4.153 27 C -0.071 4.071 28 C -0.178 4.178 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.243 0.757 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.960 5.074 -9.166 28.924 hybrid contribution -0.421 -2.221 -0.478 2.310 sum -27.381 2.854 -9.644 29.170 Atomic orbital electron populations 1.20770 0.91086 1.02763 1.02248 1.19624 0.95802 0.92520 0.98807 1.20853 0.93469 0.97436 1.04253 1.19798 0.93565 0.95134 0.97792 1.20807 1.00357 0.93669 1.02374 1.21085 1.01108 0.90344 1.02132 1.17692 0.90641 0.85826 0.99120 1.43641 1.21975 1.12237 1.54799 1.20861 0.80157 0.90074 0.78137 1.90709 1.68358 1.39350 1.37759 1.21600 0.90750 0.91246 1.01171 0.87940 1.22413 1.00919 0.99200 1.01607 1.61849 1.03147 1.44803 1.13786 1.22397 1.00268 0.99446 0.85519 1.21460 0.91949 1.00285 0.99434 1.19198 0.95780 0.94815 0.90834 1.21085 0.89005 1.06591 1.37841 0.90858 1.25043 0.95132 0.97760 0.95501 1.69908 0.98600 1.37830 1.47891 0.86841 0.77438 0.84213 0.79686 1.20613 1.22662 1.19262 1.22015 0.91782 1.01068 1.00439 1.22252 0.94569 0.91447 0.98865 1.20685 0.91959 0.98218 1.06946 0.91194 0.91625 0.91486 0.86210 0.91101 0.91528 0.91040 0.84520 0.75671 0.92020 0.90952 0.91111 0.95604 0.90026 0.92495 0.91756 0.96143 0.92812 0.91160 0.93310 0.95332 0.91932 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.07 -0.61 5.88 -104.65 -0.62 -1.22 16 3 C -0.14 -1.36 9.35 -39.55 -0.37 -1.73 16 4 C -0.06 -0.69 5.88 -104.65 -0.62 -1.30 16 5 C -0.12 -1.05 10.01 36.01 0.36 -0.69 16 6 C -0.13 -1.62 8.31 -39.40 -0.33 -1.95 16 7 C 0.16 1.85 6.28 -83.69 -0.53 1.32 16 8 N -0.68 -6.95 5.34 -9.86 -0.05 -7.00 16 9 C 0.52 6.94 6.70 -10.98 -0.07 6.87 16 10 O -0.49 -8.47 12.02 5.55 0.07 -8.40 16 11 C 0.07 0.81 2.70 -68.86 -0.19 0.63 16 12 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 13 C -0.18 -1.92 8.30 37.16 0.31 -1.61 16 14 N -0.51 -8.53 4.34 -228.07 -0.99 -9.52 16 15 C 0.05 0.91 4.16 -3.83 -0.02 0.89 16 16 C -0.09 -1.99 5.32 -26.64 -0.14 -2.13 16 17 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 18 C -0.51 -14.53 9.14 -34.44 -0.31 -14.84 16 19 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 21 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 22 Si 0.89 22.12 24.37 -169.99 -4.14 17.98 16 23 H -0.28 -6.74 6.89 56.52 0.39 -6.35 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 26 C -0.12 -2.51 4.84 -26.65 -0.13 -2.64 16 27 C 0.06 0.97 5.22 -3.83 -0.02 0.95 16 28 C -0.16 -1.50 9.62 -39.39 -0.38 -1.88 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.14 2.03 6.42 -52.48 -0.34 1.69 16 37 H 0.41 2.73 8.82 -40.82 -0.36 2.37 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.78 7.09 -51.93 -0.37 0.41 16 40 H 0.07 0.85 6.45 -51.93 -0.33 0.51 16 41 H 0.03 0.44 6.59 -51.93 -0.34 0.10 16 42 H 0.08 1.49 5.93 -51.93 -0.31 1.18 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.05 1.11 3.38 -51.93 -0.18 0.93 16 49 H 0.03 0.48 7.13 -51.93 -0.37 0.11 16 50 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -33.58 387.89 -9.89 -43.47 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.45 Total: 2.64 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.94 Total: -17.66 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.27 Total: -43.87 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.58 -9.89 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.358 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds