Wall clock time and date at job start Tue Mar 31 2020 15:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38280 * 119.96483 * 2 1 4 4 C 1.38279 * 120.14017 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.96180 * 179.97438 * 4 3 2 6 6 C 1.38109 * 120.07142 * 359.96380 * 4 3 2 7 7 C 1.38868 * 119.93240 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07680 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99425 * 33.28456 * 8 7 6 10 10 O 1.21288 * 120.00325 * 5.31227 * 9 8 7 11 11 C 1.50707 * 119.99790 * 185.31316 * 9 8 7 12 12 H 1.08997 * 109.46852 * 45.96254 * 11 9 8 13 13 C 1.53003 * 109.47120 * 285.96143 * 11 9 8 14 14 N 1.46896 * 109.46989 * 165.96156 * 11 9 8 15 15 C 1.46850 * 110.99665 * 72.34881 * 14 11 9 16 16 C 1.53045 * 109.52045 * 185.83958 * 15 14 11 17 17 C 1.53123 * 109.27508 * 300.81641 * 16 15 14 18 18 C 1.50700 * 109.52012 * 177.55953 * 17 16 15 19 19 H 1.07997 * 120.00449 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99944 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99895 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46851 * 89.99870 * 22 20 18 24 24 H 1.48502 * 109.46706 * 209.99524 * 22 20 18 25 25 H 1.48499 * 109.47284 * 329.99769 * 22 20 18 26 26 C 1.53119 * 109.16191 * 57.65781 * 17 16 15 27 27 C 1.46850 * 110.99865 * 196.55307 * 14 11 9 28 28 C 1.38118 * 119.96123 * 180.23637 * 2 1 3 29 29 H 1.09004 * 109.46918 * 90.00011 * 1 2 3 30 30 H 1.09005 * 109.47360 * 209.99476 * 1 2 3 31 31 H 1.09001 * 109.47322 * 329.99503 * 1 2 3 32 32 H 1.07997 * 119.92714 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47364 * 269.97794 * 5 4 3 34 34 H 1.08994 * 109.47264 * 29.98104 * 5 4 3 35 35 H 1.09003 * 109.46935 * 149.98311 * 5 4 3 36 36 H 1.08004 * 120.03570 * 179.97438 * 6 4 3 37 37 H 0.96995 * 120.00620 * 213.28674 * 8 7 6 38 38 H 1.09001 * 109.46711 * 60.00203 * 13 11 9 39 39 H 1.08994 * 109.47144 * 179.97438 * 13 11 9 40 40 H 1.09000 * 109.47256 * 300.00331 * 13 11 9 41 41 H 1.08998 * 109.46640 * 65.82635 * 15 14 11 42 42 H 1.09001 * 109.45370 * 305.84604 * 15 14 11 43 43 H 1.08995 * 109.50234 * 180.88103 * 16 15 14 44 44 H 1.08993 * 109.50653 * 60.75517 * 16 15 14 45 45 H 1.08993 * 109.52445 * 297.74965 * 17 16 15 46 46 H 0.97004 * 120.00069 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.50316 * 62.27958 * 26 17 16 48 48 H 1.08993 * 109.50717 * 182.40093 * 26 17 16 49 49 H 1.08997 * 109.46292 * 294.17922 * 27 14 11 50 50 H 1.09004 * 109.46129 * 54.14791 * 27 14 11 51 51 H 1.07997 * 120.04157 * 0.04536 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3291 2.5101 -0.0001 6 6 4.2761 0.0091 0.0018 7 6 3.5856 -1.1957 0.0020 8 7 4.2873 -2.4062 0.0039 9 6 5.4687 -2.4991 0.6460 10 8 5.8776 -1.5646 1.3021 11 6 6.2817 -3.7644 0.5485 12 1 6.3221 -4.0911 -0.4905 13 6 5.6313 -4.8555 1.4014 14 7 7.6442 -3.5095 1.0351 15 6 7.6609 -3.3533 2.4951 16 6 9.0644 -2.9465 2.9499 17 6 10.0662 -4.0224 2.5215 18 6 11.4583 -3.5990 2.9137 19 1 11.6143 -2.6571 3.4186 20 6 12.5329 -4.4147 2.6290 21 7 13.7478 -4.0450 2.9709 22 14 12.2632 -6.0442 1.7565 23 1 12.3472 -5.8392 0.2881 24 1 13.3063 -7.0119 2.1817 25 1 10.9218 -6.5768 2.1060 26 6 9.9943 -4.1998 1.0023 27 6 8.5638 -4.5702 0.6040 28 6 2.1968 -1.1966 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6559 2.1322 -0.0004 33 1 4.5103 2.8246 -1.0279 34 1 3.7369 3.2679 0.5127 35 1 5.2817 2.3837 0.5145 36 1 5.3562 0.0131 0.0018 37 1 3.9237 -3.1784 -0.4569 38 1 4.6204 -5.0445 1.0403 39 1 6.2191 -5.7706 1.3306 40 1 5.5908 -4.5287 2.4405 41 1 7.3866 -4.2979 2.9647 42 1 6.9472 -2.5824 2.7859 43 1 9.0804 -2.8458 4.0350 44 1 9.3340 -1.9951 2.4915 45 1 9.8198 -4.9649 3.0104 46 1 14.5039 -4.6186 2.7703 47 1 10.2785 -3.2680 0.5133 48 1 10.6746 -4.9943 0.6961 49 1 8.2852 -5.5090 1.0825 50 1 8.5060 -4.6832 -0.4786 51 1 1.6569 -2.1319 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:53 Heat of formation + Delta-G solvation = -32.414565 kcal Electronic energy + Delta-G solvation = -28666.793344 eV Core-core repulsion = 24950.649066 eV Total energy + Delta-G solvation = -3716.144278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83785 -40.43666 -39.26567 -36.24713 -36.02807 -34.38982 -34.08034 -31.90411 -31.75251 -30.49404 -28.10653 -27.64058 -27.58536 -25.77791 -24.27026 -23.50858 -22.28993 -22.03989 -20.87668 -20.18557 -18.87957 -18.35651 -17.82056 -17.25302 -16.92168 -16.50546 -16.17042 -16.11318 -15.55714 -15.39083 -15.04057 -14.98636 -14.85697 -14.58288 -14.40856 -14.05669 -13.98505 -13.85584 -13.58585 -13.40164 -13.34330 -13.26404 -13.07315 -12.91863 -12.67610 -12.62543 -12.57885 -12.42919 -12.06745 -11.99925 -11.93044 -11.64036 -11.42328 -11.15362 -11.06070 -10.98107 -10.64569 -10.44548 -9.48290 -9.19036 -9.02512 -8.28863 -6.33001 0.31717 0.43385 1.29960 1.35895 1.47295 1.60820 1.92342 2.33759 2.81482 2.98491 3.05861 3.60353 3.90682 3.91041 3.92631 4.04087 4.11668 4.21478 4.25180 4.29663 4.37693 4.40250 4.43098 4.50776 4.54184 4.65867 4.68875 4.73441 4.75595 4.76740 4.81009 4.89661 4.90757 4.91467 4.94110 4.99842 5.10654 5.16519 5.18686 5.25874 5.28889 5.40217 5.46932 5.49549 5.66639 5.67191 5.72041 5.77635 6.11223 6.14031 6.15643 6.33526 6.49231 6.73524 7.18932 7.31725 8.88689 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.002555 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.771834 B =10954.450642 C =11689.982334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.114 4.114 6 C -0.156 4.156 7 C 0.145 3.855 8 N -0.662 5.662 9 C 0.519 3.481 10 O -0.541 6.541 11 C 0.068 3.932 12 H 0.136 0.864 13 C -0.177 4.177 14 N -0.533 5.533 15 C 0.068 3.932 16 C -0.090 4.090 17 C 0.015 3.985 18 C -0.521 4.521 19 H 0.023 0.977 20 C 0.004 3.996 21 N -0.955 5.955 22 Si 0.958 3.042 23 H -0.262 1.262 24 H -0.300 1.300 25 H -0.241 1.241 26 C -0.115 4.115 27 C 0.064 3.936 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.427 0.573 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.024 0.976 46 H 0.265 0.735 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.095 0.905 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.133 1.457 -11.695 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.164 4.164 4 C -0.078 4.078 5 C -0.171 4.171 6 C -0.177 4.177 7 C 0.051 3.949 8 N -0.309 5.309 9 C 0.307 3.693 10 O -0.415 6.415 11 C -0.044 4.044 12 H 0.153 0.847 13 C -0.236 4.236 14 N -0.258 5.258 15 C -0.059 4.059 16 C -0.128 4.128 17 C -0.004 4.004 18 C -0.559 4.559 19 H 0.041 0.959 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.228 1.228 25 H -0.164 1.164 26 C -0.152 4.152 27 C -0.063 4.063 28 C -0.175 4.175 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -31.436 2.476 -11.427 33.540 hybrid contribution 0.925 -1.226 0.264 1.559 sum -30.511 1.249 -11.162 32.513 Atomic orbital electron populations 1.20830 0.88638 1.03771 1.03395 1.20074 0.97579 0.92077 0.97151 1.21150 0.92814 0.98889 1.03549 1.20036 0.94615 0.95100 0.98017 1.20819 0.99637 0.93618 1.02994 1.21012 0.99834 0.92142 1.04678 1.17863 0.91606 0.85588 0.99864 1.43406 1.20935 1.12637 1.53911 1.21124 0.80760 0.89800 0.77637 1.90708 1.69669 1.41025 1.40141 1.21730 0.88182 0.91361 1.03137 0.84686 1.22383 1.02927 0.98132 1.00146 1.61650 1.05996 1.45535 1.12600 1.22099 0.96968 0.99823 0.87041 1.21357 0.94189 0.98455 0.98841 1.19130 0.93162 0.95184 0.92908 1.21410 0.92168 1.04889 1.37400 0.95873 1.26026 0.94447 1.02353 0.96365 1.70081 0.99849 1.39837 1.49758 0.85709 0.78478 0.78463 0.79001 1.18783 1.22761 1.16434 1.21862 0.95424 1.00027 0.97921 1.22142 0.91344 0.91848 1.00958 1.20987 0.91009 0.99713 1.05809 0.89827 0.90540 0.90643 0.84111 0.90113 0.89820 0.92867 0.87709 0.73390 0.88460 0.90329 0.92887 0.94065 0.90582 0.93346 0.94455 0.95837 0.92629 0.93279 0.93684 0.93656 0.88668 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.07 -1.05 5.88 -19.88 -0.12 -1.16 16 3 C -0.15 -2.54 9.35 22.29 0.21 -2.34 16 4 C -0.08 -1.71 5.88 -19.89 -0.12 -1.82 16 5 C -0.11 -2.13 10.01 71.24 0.71 -1.42 16 6 C -0.16 -4.14 8.31 22.39 0.19 -3.96 16 7 C 0.15 3.15 6.28 38.15 0.24 3.39 16 8 N -0.66 -12.09 5.34 -303.49 -1.62 -13.71 16 9 C 0.52 13.15 6.70 87.66 0.59 13.74 16 10 O -0.54 -19.16 12.02 -3.05 -0.04 -19.20 16 11 C 0.07 1.47 2.70 44.17 0.12 1.59 16 12 H 0.14 2.09 7.86 -2.39 -0.02 2.07 16 13 C -0.18 -2.97 8.30 71.98 0.60 -2.38 16 14 N -0.53 -16.83 4.34 -875.47 -3.80 -20.63 16 15 C 0.07 2.42 4.16 86.33 0.36 2.77 16 16 C -0.09 -4.02 5.32 30.65 0.16 -3.85 16 17 C 0.02 0.73 1.75 -11.46 -0.02 0.71 16 18 C -0.52 -31.37 9.14 25.60 0.23 -31.13 16 19 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 20 C 0.00 0.25 5.45 84.66 0.46 0.71 16 21 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 22 Si 0.96 45.42 24.37 68.60 1.67 47.09 16 23 H -0.26 -11.67 6.89 99.48 0.69 -10.98 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.24 -10.32 6.53 99.48 0.65 -9.67 16 26 C -0.11 -4.86 4.84 30.65 0.15 -4.71 16 27 C 0.06 2.00 5.22 86.33 0.45 2.46 16 28 C -0.16 -2.53 9.62 22.40 0.22 -2.31 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.51 8.09 -2.38 -0.02 0.50 16 31 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 32 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.10 3.40 6.42 -2.91 -0.02 3.38 16 37 H 0.43 4.11 8.82 -92.71 -0.82 3.29 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.27 7.09 -2.39 -0.02 1.26 16 40 H 0.05 1.10 6.45 -2.39 -0.02 1.09 16 41 H 0.04 1.34 6.59 -2.39 -0.02 1.32 16 42 H 0.08 2.82 5.93 -2.39 -0.01 2.81 16 43 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.02 1.13 7.19 -2.39 -0.02 1.11 16 46 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 1.93 3.38 -2.39 -0.01 1.92 16 49 H 0.05 1.29 7.13 -2.39 -0.02 1.28 16 50 H 0.10 2.40 7.95 -2.39 -0.02 2.38 16 51 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -79.66 387.89 1.68 -77.98 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.03 Total: 20.05 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 5.14 Total: -29.94 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -5.12 Total: -95.98 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.04 Total: -19.20 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -79.66 1.68 -77.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.562 kcal (2) G-P(sol) polarization free energy of solvation -79.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds