Wall clock time and date at job start Tue Mar 31 2020 15:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38302 * 119.96678 * 2 1 4 4 C 1.38258 * 120.14754 * 180.02562 * 3 2 1 5 5 C 1.38141 * 120.06919 * 359.74190 * 4 3 2 6 6 C 1.50699 * 120.03812 * 180.25614 * 5 4 3 7 7 C 1.38857 * 119.92487 * 0.48852 * 5 4 3 8 8 N 1.39921 * 120.06773 * 179.78490 * 7 5 4 9 9 C 1.34780 * 119.99616 * 151.28599 * 8 7 5 10 10 O 1.21285 * 120.00355 * 4.21919 * 9 8 7 11 11 C 1.50699 * 119.99824 * 184.21891 * 9 8 7 12 12 H 1.09005 * 109.47305 * 46.14888 * 11 9 8 13 13 C 1.52998 * 109.47632 * 286.14554 * 11 9 8 14 14 N 1.46900 * 109.47372 * 166.14119 * 11 9 8 15 15 C 1.46836 * 111.00572 * 196.05113 * 14 11 9 16 16 C 1.53036 * 109.52771 * 174.16230 * 15 14 11 17 17 C 1.53124 * 109.27718 * 59.17976 * 16 15 14 18 18 C 1.50697 * 109.52399 * 182.44271 * 17 16 15 19 19 H 1.08002 * 120.00081 * 119.68412 * 18 17 16 20 20 C 1.37876 * 120.00113 * 299.68236 * 18 17 16 21 21 N 1.31523 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00324 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 90.00133 * 22 20 18 24 24 H 1.48497 * 109.47512 * 210.00268 * 22 20 18 25 25 H 1.48501 * 109.46927 * 330.00317 * 22 20 18 26 26 C 1.53116 * 109.16116 * 302.35001 * 17 16 15 27 27 C 1.46850 * 110.99425 * 71.84099 * 14 11 9 28 28 C 1.38096 * 119.96597 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47038 * 270.01512 * 1 2 3 30 30 H 1.08995 * 109.47330 * 30.02433 * 1 2 3 31 31 H 1.09008 * 109.46929 * 150.02594 * 1 2 3 32 32 H 1.08008 * 119.92554 * 0.02587 * 3 2 1 33 33 H 1.07999 * 119.96854 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.46828 * 270.23520 * 6 5 4 35 35 H 1.08995 * 109.46942 * 30.23446 * 6 5 4 36 36 H 1.08996 * 109.47151 * 150.23223 * 6 5 4 37 37 H 0.96996 * 120.00138 * 331.28900 * 8 7 5 38 38 H 1.08997 * 109.46735 * 300.00504 * 13 11 9 39 39 H 1.09010 * 109.46922 * 59.99723 * 13 11 9 40 40 H 1.08997 * 109.47225 * 179.97438 * 13 11 9 41 41 H 1.08999 * 109.46474 * 294.18152 * 15 14 11 42 42 H 1.09004 * 109.46037 * 54.14638 * 15 14 11 43 43 H 1.09003 * 109.50206 * 299.24222 * 16 15 14 44 44 H 1.08998 * 109.50882 * 179.12072 * 16 15 14 45 45 H 1.09001 * 109.51915 * 62.25290 * 17 16 15 46 46 H 0.97003 * 119.99940 * 179.97438 * 21 20 18 47 47 H 1.09007 * 109.50353 * 297.71331 * 26 17 16 48 48 H 1.08999 * 109.50484 * 177.59322 * 26 17 16 49 49 H 1.09003 * 109.46705 * 305.85958 * 27 14 11 50 50 H 1.09001 * 109.46036 * 65.82974 * 27 14 11 51 51 H 1.08001 * 120.03660 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2763 0.0092 0.0043 6 6 5.7832 0.0148 0.0096 7 6 3.5857 -1.1955 -0.0005 8 7 4.2876 -2.4059 -0.0002 9 6 3.7379 -3.5034 0.5565 10 8 2.6054 -3.4618 0.9885 11 6 4.5305 -4.7822 0.6421 12 1 5.5335 -4.5642 1.0093 13 6 4.6228 -5.4191 -0.7459 14 7 3.8631 -5.7113 1.5638 15 6 4.7701 -6.7922 1.9699 16 6 4.0926 -7.6546 3.0372 17 6 2.7962 -8.2377 2.4680 18 6 2.0939 -9.0392 3.5335 19 1 1.1002 -8.7608 3.8518 20 6 2.7201 -10.1281 4.1022 21 7 3.9305 -10.4669 3.7149 22 14 1.8500 -11.1212 5.4235 23 1 1.0708 -12.2143 4.7885 24 1 2.8556 -11.7029 6.3484 25 1 0.9317 -10.2359 6.1839 26 6 1.8896 -7.0927 2.0080 27 6 2.6311 -6.2466 0.9705 28 6 2.1967 -1.1964 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6560 2.1325 0.0004 33 1 4.1169 2.1398 -0.0001 34 1 6.1501 0.0183 -1.0168 35 1 6.1414 0.9050 0.5265 36 1 6.1481 -0.8749 0.5228 37 1 5.1697 -2.4551 -0.4005 38 1 3.6199 -5.6371 -1.1130 39 1 5.1181 -4.7297 -1.4298 40 1 5.1965 -6.3438 -0.6840 41 1 5.0110 -7.4088 1.1039 42 1 5.6863 -6.3640 2.3767 43 1 3.8639 -7.0416 3.9091 44 1 4.7600 -8.4661 3.3272 45 1 3.0282 -8.8819 1.6198 46 1 4.3712 -11.2327 4.1152 47 1 1.6262 -6.4709 2.8637 48 1 0.9831 -7.5027 1.5626 49 1 1.9934 -5.4221 0.6515 50 1 2.8820 -6.8658 0.1093 51 1 1.6567 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542878226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:07 Heat of formation + Delta-G solvation = -14.118206 kcal Electronic energy + Delta-G solvation = -28830.665864 eV Core-core repulsion = 25115.314976 eV Total energy + Delta-G solvation = -3715.350888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.90584 -39.27447 -37.77748 -35.24242 -34.42313 -33.42613 -31.99107 -30.17087 -29.79922 -29.44435 -28.77328 -25.82906 -25.13671 -24.41892 -22.93413 -22.17342 -21.47121 -20.74935 -19.95139 -18.33941 -17.34477 -16.95958 -16.30500 -15.85131 -15.67511 -15.22296 -14.79674 -14.53826 -14.43614 -14.05937 -13.93002 -13.88180 -13.50041 -13.45075 -13.07287 -12.87441 -12.84465 -12.54742 -12.32740 -12.12810 -12.04357 -11.95140 -11.79294 -11.65984 -11.39558 -11.28968 -11.23235 -10.89701 -10.74692 -10.46322 -10.36789 -10.07050 -9.95197 -9.56548 -9.37806 -8.79409 -8.67646 -8.65038 -8.24768 -8.10414 -7.72814 -5.93472 -3.97812 1.15171 1.31221 2.61972 2.89654 3.34310 3.40800 3.45415 3.65839 4.37756 4.49450 4.53093 4.67219 4.68858 4.93049 4.98668 5.01041 5.06515 5.15296 5.30017 5.33509 5.36868 5.44483 5.49655 5.52784 5.59577 5.64039 5.74906 5.80770 5.83308 5.92745 6.00147 6.01892 6.16836 6.20303 6.25229 6.32355 6.39024 6.47801 6.57781 6.59929 6.72837 6.97147 6.99934 7.12223 7.20312 7.28224 7.47034 7.64829 7.68325 7.86169 8.10518 8.14867 8.20331 8.54246 9.05855 9.66264 11.12836 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002577 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.850818 B =10863.588404 C =11653.750237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.113 4.113 7 C 0.157 3.843 8 N -0.676 5.676 9 C 0.521 3.479 10 O -0.492 6.492 11 C 0.065 3.935 12 H 0.101 0.899 13 C -0.182 4.182 14 N -0.513 5.513 15 C 0.058 3.942 16 C -0.103 4.103 17 C 0.048 3.952 18 C -0.507 4.507 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.104 4.104 27 C 0.055 3.945 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.408 0.592 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.094 0.906 45 H 0.020 0.980 46 H 0.258 0.742 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.024 0.976 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 21.829 -11.930 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.159 4.159 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.170 4.170 7 C 0.063 3.937 8 N -0.321 5.321 9 C 0.308 3.692 10 O -0.363 6.363 11 C -0.048 4.048 12 H 0.119 0.881 13 C -0.241 4.241 14 N -0.237 5.237 15 C -0.069 4.069 16 C -0.142 4.142 17 C 0.029 3.971 18 C -0.545 4.545 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.142 4.142 27 C -0.072 4.072 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.042 0.958 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.248 21.865 -11.101 24.736 hybrid contribution 0.416 -0.989 -0.139 1.082 sum 3.664 20.876 -11.240 23.991 Atomic orbital electron populations 1.20776 0.91080 1.02567 1.02531 1.19841 0.96183 0.92660 0.98655 1.20953 0.94087 0.97442 1.03458 1.20753 0.94007 0.96720 1.00284 1.19612 0.95943 0.91869 1.05616 1.20702 0.91165 1.03017 1.02076 1.17632 0.91398 0.84659 1.00055 1.43645 1.21298 1.08238 1.58939 1.20970 0.87648 0.84489 0.76092 1.90629 1.18077 1.83234 1.44406 1.21601 0.97855 0.91518 0.93823 0.88142 1.22409 1.03482 1.02016 0.96157 1.61928 1.05866 1.17966 1.37961 1.22342 0.94469 0.91224 0.98868 1.21665 0.99943 0.97202 0.95355 1.18691 0.91525 0.91261 0.95603 1.21233 1.01499 1.11167 1.20627 0.92768 1.24965 0.94946 0.97273 0.96889 1.69876 1.12982 1.27300 1.43199 0.86638 0.79391 0.80340 0.81890 1.20844 1.21335 1.19950 1.21646 0.97933 0.97334 0.97263 1.22319 0.90914 0.97750 0.96259 1.21449 0.92480 0.99485 1.01391 0.91009 0.91710 0.91435 0.86289 0.85982 0.91346 0.91199 0.91769 0.75646 0.91243 0.92245 0.90769 0.95557 0.92665 0.93753 0.88824 0.96224 0.93187 0.92461 0.93339 0.90611 0.95833 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.07 -0.83 5.88 -104.65 -0.62 -1.45 16 3 C -0.14 -1.40 9.70 -39.55 -0.38 -1.78 16 4 C -0.10 -0.94 9.70 -39.61 -0.38 -1.32 16 5 C -0.13 -1.29 5.90 -104.43 -0.62 -1.91 16 6 C -0.11 -0.80 9.45 36.00 0.34 -0.46 16 7 C 0.16 1.91 6.39 -83.69 -0.54 1.38 16 8 N -0.68 -7.46 4.89 -9.86 -0.05 -7.51 16 9 C 0.52 7.38 6.84 -10.98 -0.08 7.31 16 10 O -0.49 -8.77 11.35 5.55 0.06 -8.70 16 11 C 0.06 0.88 2.70 -68.87 -0.19 0.70 16 12 H 0.10 1.16 7.87 -51.93 -0.41 0.75 16 13 C -0.18 -2.10 8.31 37.16 0.31 -1.79 16 14 N -0.51 -9.22 4.35 -228.08 -0.99 -10.21 16 15 C 0.06 1.10 5.22 -3.84 -0.02 1.08 16 16 C -0.10 -2.45 5.12 -26.65 -0.14 -2.59 16 17 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 18 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 21 N -0.89 -25.56 11.37 55.43 0.63 -24.93 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.10 -2.31 5.32 -26.65 -0.14 -2.46 16 27 C 0.05 1.04 4.18 -3.83 -0.02 1.03 16 28 C -0.13 -1.71 8.41 -39.39 -0.33 -2.04 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.06 0.45 7.06 -51.93 -0.37 0.08 16 37 H 0.41 3.17 7.57 -40.82 -0.31 2.86 16 38 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 39 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.07 0.89 7.07 -51.93 -0.37 0.52 16 41 H 0.03 0.50 7.11 -51.93 -0.37 0.13 16 42 H 0.05 0.94 7.96 -51.93 -0.41 0.53 16 43 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.08 1.44 5.89 -51.93 -0.31 1.13 16 50 H 0.02 0.44 6.58 -51.93 -0.34 0.09 16 51 H 0.15 2.26 5.73 -52.49 -0.30 1.96 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -31.58 390.85 -10.94 -42.52 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.44 Total: 3.25 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.02 Total: -16.93 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.41 Total: -42.65 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.06 Total: -8.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.58 -10.94 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.404 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds