Wall clock time and date at job start Tue Mar 31 2020 15:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38302 * 119.96678 * 2 1 4 4 C 1.38258 * 120.14754 * 180.02562 * 3 2 1 5 5 C 1.38141 * 120.06919 * 359.74190 * 4 3 2 6 6 C 1.50699 * 120.03812 * 180.25614 * 5 4 3 7 7 C 1.38857 * 119.92487 * 0.48852 * 5 4 3 8 8 N 1.39921 * 120.06773 * 179.78490 * 7 5 4 9 9 C 1.34780 * 119.99616 * 151.28599 * 8 7 5 10 10 O 1.21285 * 120.00355 * 4.21919 * 9 8 7 11 11 C 1.50699 * 119.99824 * 184.21891 * 9 8 7 12 12 H 1.09005 * 109.47305 * 46.14888 * 11 9 8 13 13 C 1.52998 * 109.47632 * 286.14554 * 11 9 8 14 14 N 1.46900 * 109.47372 * 166.14119 * 11 9 8 15 15 C 1.46836 * 111.00572 * 196.05113 * 14 11 9 16 16 C 1.53036 * 109.52771 * 174.16230 * 15 14 11 17 17 C 1.53124 * 109.27718 * 59.17976 * 16 15 14 18 18 C 1.50697 * 109.52399 * 182.44271 * 17 16 15 19 19 H 1.08002 * 120.00081 * 119.68412 * 18 17 16 20 20 C 1.37876 * 120.00113 * 299.68236 * 18 17 16 21 21 N 1.31523 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00324 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 90.00133 * 22 20 18 24 24 H 1.48497 * 109.47512 * 210.00268 * 22 20 18 25 25 H 1.48501 * 109.46927 * 330.00317 * 22 20 18 26 26 C 1.53116 * 109.16116 * 302.35001 * 17 16 15 27 27 C 1.46850 * 110.99425 * 71.84099 * 14 11 9 28 28 C 1.38096 * 119.96597 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47038 * 270.01512 * 1 2 3 30 30 H 1.08995 * 109.47330 * 30.02433 * 1 2 3 31 31 H 1.09008 * 109.46929 * 150.02594 * 1 2 3 32 32 H 1.08008 * 119.92554 * 0.02587 * 3 2 1 33 33 H 1.07999 * 119.96854 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.46828 * 270.23520 * 6 5 4 35 35 H 1.08995 * 109.46942 * 30.23446 * 6 5 4 36 36 H 1.08996 * 109.47151 * 150.23223 * 6 5 4 37 37 H 0.96996 * 120.00138 * 331.28900 * 8 7 5 38 38 H 1.08997 * 109.46735 * 300.00504 * 13 11 9 39 39 H 1.09010 * 109.46922 * 59.99723 * 13 11 9 40 40 H 1.08997 * 109.47225 * 179.97438 * 13 11 9 41 41 H 1.08999 * 109.46474 * 294.18152 * 15 14 11 42 42 H 1.09004 * 109.46037 * 54.14638 * 15 14 11 43 43 H 1.09003 * 109.50206 * 299.24222 * 16 15 14 44 44 H 1.08998 * 109.50882 * 179.12072 * 16 15 14 45 45 H 1.09001 * 109.51915 * 62.25290 * 17 16 15 46 46 H 0.97003 * 119.99940 * 179.97438 * 21 20 18 47 47 H 1.09007 * 109.50353 * 297.71331 * 26 17 16 48 48 H 1.08999 * 109.50484 * 177.59322 * 26 17 16 49 49 H 1.09003 * 109.46705 * 305.85958 * 27 14 11 50 50 H 1.09001 * 109.46036 * 65.82974 * 27 14 11 51 51 H 1.08001 * 120.03660 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2763 0.0092 0.0043 6 6 5.7832 0.0148 0.0096 7 6 3.5857 -1.1955 -0.0005 8 7 4.2876 -2.4059 -0.0002 9 6 3.7379 -3.5034 0.5565 10 8 2.6054 -3.4618 0.9885 11 6 4.5305 -4.7822 0.6421 12 1 5.5335 -4.5642 1.0093 13 6 4.6228 -5.4191 -0.7459 14 7 3.8631 -5.7113 1.5638 15 6 4.7701 -6.7922 1.9699 16 6 4.0926 -7.6546 3.0372 17 6 2.7962 -8.2377 2.4680 18 6 2.0939 -9.0392 3.5335 19 1 1.1002 -8.7608 3.8518 20 6 2.7201 -10.1281 4.1022 21 7 3.9305 -10.4669 3.7149 22 14 1.8500 -11.1212 5.4235 23 1 1.0708 -12.2143 4.7885 24 1 2.8556 -11.7029 6.3484 25 1 0.9317 -10.2359 6.1839 26 6 1.8896 -7.0927 2.0080 27 6 2.6311 -6.2466 0.9705 28 6 2.1967 -1.1964 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6560 2.1325 0.0004 33 1 4.1169 2.1398 -0.0001 34 1 6.1501 0.0183 -1.0168 35 1 6.1414 0.9050 0.5265 36 1 6.1481 -0.8749 0.5228 37 1 5.1697 -2.4551 -0.4005 38 1 3.6199 -5.6371 -1.1130 39 1 5.1181 -4.7297 -1.4298 40 1 5.1965 -6.3438 -0.6840 41 1 5.0110 -7.4088 1.1039 42 1 5.6863 -6.3640 2.3767 43 1 3.8639 -7.0416 3.9091 44 1 4.7600 -8.4661 3.3272 45 1 3.0282 -8.8819 1.6198 46 1 4.3712 -11.2327 4.1152 47 1 1.6262 -6.4709 2.8637 48 1 0.9831 -7.5027 1.5626 49 1 1.9934 -5.4221 0.6515 50 1 2.8820 -6.8658 0.1093 51 1 1.6567 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:05 Heat of formation + Delta-G solvation = -32.336984 kcal Electronic energy + Delta-G solvation = -28831.455890 eV Core-core repulsion = 25115.314976 eV Total energy + Delta-G solvation = -3716.140914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.91847 -40.37388 -39.10403 -36.20900 -36.10358 -34.24838 -33.79013 -31.65637 -31.15287 -30.20113 -29.95355 -27.51617 -26.07278 -25.51040 -24.12878 -23.80297 -22.90605 -21.64009 -21.10012 -20.07297 -18.47193 -18.30403 -17.94071 -16.80615 -16.68794 -16.52759 -16.33989 -15.76627 -15.66281 -15.33335 -15.03082 -14.81248 -14.74467 -14.61993 -14.20824 -14.09838 -13.95991 -13.81660 -13.50769 -13.37397 -13.15475 -13.08539 -12.87804 -12.77173 -12.72283 -12.61253 -12.49401 -12.28071 -12.22388 -12.05965 -11.99418 -11.72161 -11.36793 -11.33183 -10.93878 -10.67223 -10.48093 -10.31149 -9.48539 -9.14966 -8.92648 -8.08468 -6.20882 0.32949 0.48215 1.39613 1.40513 1.51074 1.58392 1.93962 2.43525 2.84954 3.05096 3.18154 3.59031 3.93700 3.96063 3.97150 4.04860 4.18518 4.25398 4.31522 4.33796 4.40046 4.43027 4.56530 4.58840 4.63599 4.68467 4.77277 4.79751 4.82016 4.85543 4.88998 4.92424 4.92880 4.99695 5.12349 5.15583 5.18438 5.23089 5.31090 5.33910 5.41593 5.50152 5.55029 5.60567 5.62705 5.75720 5.99325 6.01522 6.17200 6.20386 6.29956 6.42259 6.49668 6.88792 7.16700 7.46071 8.96091 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002577 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.850818 B =10863.588404 C =11653.750237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.112 4.112 7 C 0.135 3.865 8 N -0.657 5.657 9 C 0.520 3.480 10 O -0.537 6.537 11 C 0.066 3.934 12 H 0.131 0.869 13 C -0.175 4.175 14 N -0.529 5.529 15 C 0.071 3.929 16 C -0.095 4.095 17 C 0.048 3.952 18 C -0.535 4.535 19 H 0.044 0.956 20 C 0.015 3.985 21 N -0.914 5.914 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.274 1.274 26 C -0.097 4.097 27 C 0.069 3.931 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.425 0.575 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.068 0.932 45 H -0.006 1.006 46 H 0.261 0.739 47 H 0.038 0.962 48 H 0.046 0.954 49 H 0.076 0.924 50 H 0.030 0.970 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 24.114 -12.820 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.169 4.169 7 C 0.040 3.960 8 N -0.303 5.303 9 C 0.308 3.692 10 O -0.412 6.412 11 C -0.046 4.046 12 H 0.149 0.851 13 C -0.234 4.234 14 N -0.254 5.254 15 C -0.056 4.056 16 C -0.134 4.134 17 C 0.029 3.971 18 C -0.574 4.574 19 H 0.062 0.938 20 C -0.183 4.183 21 N -0.554 5.554 22 Si 0.777 3.223 23 H -0.201 1.201 24 H -0.205 1.205 25 H -0.199 1.199 26 C -0.135 4.135 27 C -0.058 4.058 28 C -0.176 4.176 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.012 0.988 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.049 0.951 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.136 24.178 -12.023 27.486 hybrid contribution -0.167 -1.606 0.118 1.619 sum 4.969 22.572 -11.905 25.998 Atomic orbital electron populations 1.20792 0.90250 1.03238 1.02545 1.20094 0.97125 0.92794 0.99050 1.21289 0.94740 0.97664 1.02241 1.21186 0.94010 0.97768 0.98981 1.19984 0.97687 0.91122 1.04089 1.20786 0.88794 1.03803 1.03511 1.17817 0.91200 0.85606 1.01375 1.43376 1.21696 1.07261 1.57985 1.21069 0.87084 0.85260 0.75798 1.90633 1.19951 1.83978 1.46632 1.21725 0.98444 0.90185 0.94248 0.85148 1.22357 1.02976 1.02715 0.95372 1.61734 1.05663 1.17878 1.40132 1.22100 0.94837 0.91185 0.97519 1.21423 0.98906 0.96865 0.96198 1.18634 0.92820 0.91577 0.94058 1.21561 1.01528 1.12380 1.21885 0.93800 1.25685 0.95668 0.98165 0.98829 1.69990 1.13865 1.27580 1.43952 0.85663 0.78448 0.78845 0.79337 1.20103 1.20495 1.19858 1.21514 0.97873 0.96603 0.97555 1.22071 0.91469 0.97179 0.95082 1.21396 0.93508 0.99159 1.03525 0.91284 0.89491 0.92308 0.83891 0.82985 0.89454 0.89874 0.91576 0.73616 0.92894 0.88572 0.90804 0.95127 0.89955 0.95739 0.91398 0.98816 0.92970 0.94355 0.93558 0.90530 0.95146 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.01 71.23 0.71 -1.39 16 2 C -0.09 -2.04 5.88 -19.88 -0.12 -2.16 16 3 C -0.14 -2.51 9.70 22.29 0.22 -2.30 16 4 C -0.10 -1.61 9.70 22.25 0.22 -1.40 16 5 C -0.13 -2.23 5.90 -19.74 -0.12 -2.35 16 6 C -0.11 -1.19 9.45 71.24 0.67 -0.51 16 7 C 0.13 3.13 6.39 38.16 0.24 3.38 16 8 N -0.66 -13.43 4.89 -303.50 -1.48 -14.91 16 9 C 0.52 14.36 6.84 87.66 0.60 14.96 16 10 O -0.54 -19.71 11.35 -3.04 -0.03 -19.74 16 11 C 0.07 1.67 2.70 44.17 0.12 1.79 16 12 H 0.13 2.55 7.87 -2.38 -0.02 2.53 16 13 C -0.18 -3.66 8.31 71.98 0.60 -3.06 16 14 N -0.53 -18.83 4.35 -875.51 -3.81 -22.64 16 15 C 0.07 2.64 5.22 86.33 0.45 3.09 16 16 C -0.10 -4.66 5.12 30.65 0.16 -4.50 16 17 C 0.05 2.51 2.16 -11.46 -0.02 2.49 16 18 C -0.54 -31.13 8.56 25.60 0.22 -30.91 16 19 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 20 C 0.02 0.86 5.31 84.65 0.45 1.31 16 21 N -0.91 -53.29 11.37 21.45 0.24 -53.05 16 22 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 C -0.10 -4.54 5.32 30.65 0.16 -4.38 16 27 C 0.07 2.70 4.18 86.33 0.36 3.06 16 28 C -0.16 -4.26 8.41 22.39 0.19 -4.07 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.06 1.17 8.08 -2.38 -0.02 1.15 16 32 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.07 0.68 7.06 -2.39 -0.02 0.67 16 37 H 0.42 5.34 7.57 -92.71 -0.70 4.64 16 38 H 0.05 1.29 6.44 -2.39 -0.02 1.28 16 39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 1.58 7.07 -2.39 -0.02 1.57 16 41 H 0.03 1.12 7.11 -2.39 -0.02 1.11 16 42 H 0.08 2.64 7.96 -2.39 -0.02 2.62 16 43 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 3.65 6.17 -2.39 -0.01 3.63 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 48 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 49 H 0.08 3.00 5.89 -2.39 -0.01 2.99 16 50 H 0.03 1.14 6.58 -2.39 -0.02 1.12 16 51 H 0.12 3.96 5.73 -2.91 -0.02 3.95 16 Total: -1.00 -72.23 390.85 2.27 -69.96 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.22 Total: 20.25 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.11 Total: -26.96 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -5.05 Total: -90.60 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.03 Total: -19.74 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.23 2.27 -69.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.622 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds