Wall clock time and date at job start Tue Mar 31 2020 15:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38110 * 120.03807 * 2 1 4 4 C 1.38287 * 120.06951 * 179.72481 * 3 2 1 5 5 C 1.38278 * 120.14038 * 0.27745 * 4 3 2 6 6 C 1.38110 * 120.07500 * 359.95404 * 5 4 3 7 7 C 1.50699 * 120.03852 * 180.02562 * 6 5 4 8 8 C 1.38872 * 119.92753 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07243 * 180.02562 * 8 6 5 10 10 C 1.34769 * 120.00598 * 233.38064 * 9 8 6 11 11 O 1.21292 * 119.99726 * 4.13179 * 10 9 8 12 12 C 1.50704 * 120.00466 * 184.12169 * 10 9 8 13 13 H 1.09002 * 109.46527 * 47.37037 * 12 10 9 14 14 C 1.52999 * 109.47008 * 287.37225 * 12 10 9 15 15 N 1.46899 * 109.46908 * 167.36796 * 12 10 9 16 16 C 1.46860 * 110.99643 * 195.65103 * 15 12 10 17 17 C 1.53036 * 109.51933 * 174.16627 * 16 15 12 18 18 C 1.53118 * 109.28188 * 59.18027 * 17 16 15 19 19 C 1.50697 * 109.51973 * 182.43946 * 18 17 16 20 20 H 1.08003 * 120.00169 * 119.68883 * 19 18 17 21 21 C 1.37880 * 120.00428 * 299.68170 * 19 18 17 22 22 N 1.31519 * 119.99467 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00446 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47482 * 89.99578 * 23 21 19 25 25 H 1.48501 * 109.47312 * 210.00083 * 23 21 19 26 26 H 1.48509 * 109.47014 * 329.99701 * 23 21 19 27 27 C 1.53118 * 109.16086 * 302.34185 * 18 17 16 28 28 C 1.46850 * 110.99923 * 71.44733 * 15 12 10 29 29 H 1.09001 * 109.47176 * 83.32584 * 1 2 3 30 30 H 1.08998 * 109.47401 * 203.33043 * 1 2 3 31 31 H 1.08997 * 109.46682 * 323.32715 * 1 2 3 32 32 H 1.07990 * 119.96521 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.92937 * 180.25695 * 4 3 2 34 34 H 1.08002 * 119.96259 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47243 * 90.00495 * 7 6 5 36 36 H 1.09002 * 109.47298 * 210.00444 * 7 6 5 37 37 H 1.09001 * 109.47131 * 329.99828 * 7 6 5 38 38 H 0.97007 * 119.99458 * 53.38821 * 9 8 6 39 39 H 1.09000 * 109.47370 * 60.00073 * 14 12 10 40 40 H 1.09005 * 109.46486 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.46965 * 299.99237 * 14 12 10 42 42 H 1.09000 * 109.45805 * 294.17669 * 16 15 12 43 43 H 1.08996 * 109.45669 * 54.15085 * 16 15 12 44 44 H 1.09005 * 109.50299 * 299.23355 * 17 16 15 45 45 H 1.09004 * 109.49809 * 179.12275 * 17 16 15 46 46 H 1.08996 * 109.51876 * 62.25092 * 18 17 16 47 47 H 0.97001 * 120.00023 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.50420 * 297.71791 * 27 18 17 49 49 H 1.09000 * 109.50158 * 177.59300 * 27 18 17 50 50 H 1.09002 * 109.45837 * 305.84703 * 28 15 12 51 51 H 1.09000 * 109.46189 * 65.81622 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0057 5 6 4.2762 0.0009 0.0057 6 6 3.5909 -1.1981 0.0009 7 6 4.3491 -2.5004 0.0015 8 6 2.2021 -1.2023 -0.0044 9 7 1.5047 -2.4153 -0.0088 10 6 0.5689 -2.6513 -0.9494 11 8 0.3835 -1.8448 -1.8362 12 6 -0.2472 -3.9173 -0.8997 13 1 -0.6204 -4.0693 0.1131 14 6 0.6287 -5.1049 -1.3041 15 7 -1.3805 -3.8061 -1.8277 16 6 -2.3919 -4.8338 -1.5487 17 6 -3.6177 -4.5985 -2.4341 18 6 -3.1972 -4.6558 -3.9053 19 6 -4.3886 -4.3655 -4.7812 20 1 -4.3724 -3.5190 -5.4518 21 6 -5.4993 -5.1805 -4.7268 22 7 -5.5192 -6.2111 -3.9099 23 14 -6.9758 -4.8211 -5.8130 24 1 -6.8237 -5.5336 -7.1069 25 1 -8.2134 -5.2843 -5.1353 26 1 -7.0644 -3.3594 -6.0602 27 6 -2.1090 -3.6087 -4.1582 28 6 -0.9268 -3.8726 -3.2227 29 1 -0.3633 0.1194 -1.0207 30 1 -0.3634 -0.9436 0.4070 31 1 -0.3632 0.8242 0.6138 32 1 1.6585 2.1309 0.0004 33 1 4.1196 2.1327 0.0099 34 1 5.3562 0.0049 0.0098 35 1 4.5279 -2.8163 1.0292 36 1 3.7648 -3.2613 -0.5161 37 1 5.3030 -2.3657 -0.5085 38 1 1.6948 -3.0864 0.6654 39 1 1.4696 -5.1873 -0.6155 40 1 0.0385 -6.0206 -1.2676 41 1 1.0018 -4.9528 -2.3168 42 1 -1.9758 -5.8191 -1.7587 43 1 -2.6852 -4.7793 -0.5003 44 1 -4.0424 -3.6188 -2.2149 45 1 -4.3618 -5.3705 -2.2380 46 1 -2.8084 -5.6479 -4.1346 47 1 -6.3008 -6.7843 -3.8712 48 1 -2.5099 -2.6135 -3.9660 49 1 -1.7751 -3.6736 -5.1937 50 1 -0.1561 -3.1201 -3.3902 51 1 -0.5177 -4.8625 -3.4248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542880752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:14 Heat of formation + Delta-G solvation = -12.344012 kcal Electronic energy + Delta-G solvation = -29297.375348 eV Core-core repulsion = 25582.101394 eV Total energy + Delta-G solvation = -3715.273953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92764 -39.23282 -37.67726 -34.80109 -34.39783 -33.63211 -32.02023 -30.80544 -29.89284 -28.99594 -27.26969 -26.76703 -25.76657 -24.29997 -22.38321 -22.00795 -21.18812 -20.97490 -19.89622 -18.33298 -17.70799 -16.94855 -16.30069 -15.98000 -15.59390 -15.06028 -14.81684 -14.52971 -14.25982 -14.02334 -13.92892 -13.84702 -13.50585 -13.19860 -13.08378 -12.87309 -12.83780 -12.48276 -12.31814 -12.02215 -11.98902 -11.82086 -11.67755 -11.57364 -11.37695 -11.23160 -11.18969 -10.89146 -10.73152 -10.43456 -10.06835 -10.02753 -9.93798 -9.61987 -9.37172 -8.76615 -8.68228 -8.66071 -8.35286 -8.24079 -7.70956 -5.92943 -3.97230 1.13991 1.24119 2.70476 2.98475 3.34566 3.41026 3.45601 3.59143 4.40501 4.49923 4.59211 4.66120 4.72372 4.84834 5.04570 5.07241 5.10280 5.24065 5.31955 5.34886 5.37390 5.41162 5.52479 5.63666 5.65238 5.65823 5.79847 5.84533 5.91724 5.95408 6.02557 6.19520 6.23873 6.26946 6.28223 6.31497 6.43384 6.48014 6.52996 6.61226 6.74425 6.93662 6.99934 7.13999 7.21771 7.31001 7.48910 7.66553 7.70420 7.87213 8.11510 8.19815 8.28973 8.55013 9.06483 9.66783 11.13352 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002676 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.507450 B =10460.865112 C =11040.060053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.116 4.116 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.144 3.856 9 N -0.684 5.684 10 C 0.520 3.480 11 O -0.492 6.492 12 C 0.065 3.935 13 H 0.099 0.901 14 C -0.181 4.181 15 N -0.512 5.512 16 C 0.058 3.942 17 C -0.103 4.103 18 C 0.048 3.952 19 C -0.507 4.507 20 H 0.054 0.946 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.103 4.103 28 C 0.055 3.945 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.405 0.595 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.019 0.981 47 H 0.258 0.742 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.719 7.431 13.316 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.100 4.100 7 C -0.170 4.170 8 C 0.050 3.950 9 N -0.333 5.333 10 C 0.307 3.693 11 O -0.363 6.363 12 C -0.048 4.048 13 H 0.117 0.883 14 C -0.240 4.240 15 N -0.236 5.236 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.029 3.971 19 C -0.545 4.545 20 H 0.072 0.928 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.141 4.141 28 C -0.072 4.072 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.241 0.759 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.037 0.963 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.151 8.287 12.752 24.455 hybrid contribution -0.317 -0.982 -0.282 1.070 sum 18.834 7.305 12.470 23.740 Atomic orbital electron populations 1.20860 0.90425 1.01929 1.03423 1.19955 0.96657 0.91895 0.98512 1.20899 0.94136 0.97214 1.01162 1.21081 0.94202 0.97922 1.00826 1.20816 0.99508 0.91532 1.01837 1.19850 0.92147 0.96023 1.01959 1.20725 0.99870 0.94282 1.02106 1.17269 0.89726 0.85506 1.02450 1.43551 1.39856 1.17233 1.32672 1.20846 0.79117 0.88435 0.80878 1.90700 1.65172 1.46821 1.33613 1.21600 0.92400 0.91059 0.99763 0.88277 1.22402 1.00087 0.98802 1.02741 1.61939 1.09102 1.49355 1.03199 1.22342 0.93809 0.91241 0.99535 1.21658 0.94704 1.01822 0.95928 1.18688 0.92532 0.93428 0.92416 1.21236 0.99851 1.11676 1.21751 0.92784 1.24964 0.98435 0.95100 0.95569 1.69874 1.29670 1.16337 1.37470 0.86641 0.82433 0.78571 0.80633 1.20855 1.21340 1.19953 1.21640 0.95255 1.01168 0.96070 1.22309 0.98867 0.98818 0.87207 0.89402 0.92080 0.92215 0.85872 0.86081 0.86004 0.91249 0.91518 0.91355 0.75931 0.92309 0.90913 0.91339 0.95621 0.92701 0.93767 0.88874 0.96260 0.93194 0.92479 0.93413 0.90576 0.95945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.27 36.01 0.30 -1.13 16 2 C -0.07 -0.85 5.49 -104.43 -0.57 -1.43 16 3 C -0.12 -1.25 9.72 -39.61 -0.39 -1.63 16 4 C -0.12 -1.15 10.04 -39.55 -0.40 -1.55 16 5 C -0.12 -1.11 9.70 -39.61 -0.38 -1.49 16 6 C -0.10 -1.00 5.90 -104.43 -0.62 -1.61 16 7 C -0.11 -0.86 9.69 36.01 0.35 -0.51 16 8 C 0.14 1.70 5.80 -83.69 -0.49 1.22 16 9 N -0.68 -7.40 3.86 -9.86 -0.04 -7.44 16 10 C 0.52 7.26 5.15 -10.99 -0.06 7.20 16 11 O -0.49 -8.76 11.55 5.55 0.06 -8.70 16 12 C 0.06 0.88 2.70 -68.86 -0.19 0.69 16 13 H 0.10 1.15 7.88 -51.93 -0.41 0.74 16 14 C -0.18 -2.12 8.32 37.16 0.31 -1.81 16 15 N -0.51 -9.13 4.34 -228.06 -0.99 -10.12 16 16 C 0.06 1.09 5.21 -3.83 -0.02 1.07 16 17 C -0.10 -2.43 5.12 -26.65 -0.14 -2.57 16 18 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 19 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 20 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 22 N -0.89 -25.57 11.37 55.43 0.63 -24.94 16 23 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.10 -2.31 5.32 -26.65 -0.14 -2.46 16 28 C 0.06 1.06 4.19 -3.83 -0.02 1.04 16 29 H 0.09 1.35 7.09 -51.93 -0.37 0.99 16 30 H 0.06 0.82 6.31 -51.93 -0.33 0.49 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.54 7.46 -51.93 -0.39 0.15 16 37 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.40 3.13 8.72 -40.82 -0.36 2.77 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.88 7.05 -51.93 -0.37 0.52 16 41 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 42 H 0.03 0.49 7.09 -51.93 -0.37 0.12 16 43 H 0.05 0.93 7.96 -51.93 -0.41 0.52 16 44 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.08 1.48 5.89 -51.93 -0.31 1.18 16 51 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -31.50 388.58 -11.02 -42.52 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.49 Total: 3.07 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.03 Total: -16.88 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.40 Total: -42.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.06 Total: -8.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.50 -11.02 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542880752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.175 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds