Wall clock time and date at job start Tue Mar 31 2020 15:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38110 * 120.03807 * 2 1 4 4 C 1.38287 * 120.06951 * 179.72481 * 3 2 1 5 5 C 1.38278 * 120.14038 * 0.27745 * 4 3 2 6 6 C 1.38110 * 120.07500 * 359.95404 * 5 4 3 7 7 C 1.50699 * 120.03852 * 180.02562 * 6 5 4 8 8 C 1.38872 * 119.92753 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07243 * 180.02562 * 8 6 5 10 10 C 1.34769 * 120.00598 * 233.38064 * 9 8 6 11 11 O 1.21292 * 119.99726 * 4.13179 * 10 9 8 12 12 C 1.50704 * 120.00466 * 184.12169 * 10 9 8 13 13 H 1.09002 * 109.46527 * 47.37037 * 12 10 9 14 14 C 1.52999 * 109.47008 * 287.37225 * 12 10 9 15 15 N 1.46899 * 109.46908 * 167.36796 * 12 10 9 16 16 C 1.46860 * 110.99643 * 195.65103 * 15 12 10 17 17 C 1.53036 * 109.51933 * 174.16627 * 16 15 12 18 18 C 1.53118 * 109.28188 * 59.18027 * 17 16 15 19 19 C 1.50697 * 109.51973 * 182.43946 * 18 17 16 20 20 H 1.08003 * 120.00169 * 119.68883 * 19 18 17 21 21 C 1.37880 * 120.00428 * 299.68170 * 19 18 17 22 22 N 1.31519 * 119.99467 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00446 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47482 * 89.99578 * 23 21 19 25 25 H 1.48501 * 109.47312 * 210.00083 * 23 21 19 26 26 H 1.48509 * 109.47014 * 329.99701 * 23 21 19 27 27 C 1.53118 * 109.16086 * 302.34185 * 18 17 16 28 28 C 1.46850 * 110.99923 * 71.44733 * 15 12 10 29 29 H 1.09001 * 109.47176 * 83.32584 * 1 2 3 30 30 H 1.08998 * 109.47401 * 203.33043 * 1 2 3 31 31 H 1.08997 * 109.46682 * 323.32715 * 1 2 3 32 32 H 1.07990 * 119.96521 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.92937 * 180.25695 * 4 3 2 34 34 H 1.08002 * 119.96259 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47243 * 90.00495 * 7 6 5 36 36 H 1.09002 * 109.47298 * 210.00444 * 7 6 5 37 37 H 1.09001 * 109.47131 * 329.99828 * 7 6 5 38 38 H 0.97007 * 119.99458 * 53.38821 * 9 8 6 39 39 H 1.09000 * 109.47370 * 60.00073 * 14 12 10 40 40 H 1.09005 * 109.46486 * 179.97438 * 14 12 10 41 41 H 1.08994 * 109.46965 * 299.99237 * 14 12 10 42 42 H 1.09000 * 109.45805 * 294.17669 * 16 15 12 43 43 H 1.08996 * 109.45669 * 54.15085 * 16 15 12 44 44 H 1.09005 * 109.50299 * 299.23355 * 17 16 15 45 45 H 1.09004 * 109.49809 * 179.12275 * 17 16 15 46 46 H 1.08996 * 109.51876 * 62.25092 * 18 17 16 47 47 H 0.97001 * 120.00023 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.50420 * 297.71791 * 27 18 17 49 49 H 1.09000 * 109.50158 * 177.59300 * 27 18 17 50 50 H 1.09002 * 109.45837 * 305.84703 * 28 15 12 51 51 H 1.09000 * 109.46189 * 65.81622 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0057 5 6 4.2762 0.0009 0.0057 6 6 3.5909 -1.1981 0.0009 7 6 4.3491 -2.5004 0.0015 8 6 2.2021 -1.2023 -0.0044 9 7 1.5047 -2.4153 -0.0088 10 6 0.5689 -2.6513 -0.9494 11 8 0.3835 -1.8448 -1.8362 12 6 -0.2472 -3.9173 -0.8997 13 1 -0.6204 -4.0693 0.1131 14 6 0.6287 -5.1049 -1.3041 15 7 -1.3805 -3.8061 -1.8277 16 6 -2.3919 -4.8338 -1.5487 17 6 -3.6177 -4.5985 -2.4341 18 6 -3.1972 -4.6558 -3.9053 19 6 -4.3886 -4.3655 -4.7812 20 1 -4.3724 -3.5190 -5.4518 21 6 -5.4993 -5.1805 -4.7268 22 7 -5.5192 -6.2111 -3.9099 23 14 -6.9758 -4.8211 -5.8130 24 1 -6.8237 -5.5336 -7.1069 25 1 -8.2134 -5.2843 -5.1353 26 1 -7.0644 -3.3594 -6.0602 27 6 -2.1090 -3.6087 -4.1582 28 6 -0.9268 -3.8726 -3.2227 29 1 -0.3633 0.1194 -1.0207 30 1 -0.3634 -0.9436 0.4070 31 1 -0.3632 0.8242 0.6138 32 1 1.6585 2.1309 0.0004 33 1 4.1196 2.1327 0.0099 34 1 5.3562 0.0049 0.0098 35 1 4.5279 -2.8163 1.0292 36 1 3.7648 -3.2613 -0.5161 37 1 5.3030 -2.3657 -0.5085 38 1 1.6948 -3.0864 0.6654 39 1 1.4696 -5.1873 -0.6155 40 1 0.0385 -6.0206 -1.2676 41 1 1.0018 -4.9528 -2.3168 42 1 -1.9758 -5.8191 -1.7587 43 1 -2.6852 -4.7793 -0.5003 44 1 -4.0424 -3.6188 -2.2149 45 1 -4.3618 -5.3705 -2.2380 46 1 -2.8084 -5.6479 -4.1346 47 1 -6.3008 -6.7843 -3.8712 48 1 -2.5099 -2.6135 -3.9660 49 1 -1.7751 -3.6736 -5.1937 50 1 -0.1561 -3.1201 -3.3902 51 1 -0.5177 -4.8625 -3.4248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542880752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:13 Heat of formation + Delta-G solvation = -30.353080 kcal Electronic energy + Delta-G solvation = -29298.156279 eV Core-core repulsion = 25582.101394 eV Total energy + Delta-G solvation = -3716.054885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91649 -40.36115 -38.99336 -36.09762 -35.76429 -34.43121 -33.81761 -31.85467 -31.49482 -30.43240 -28.11281 -27.53918 -27.47704 -25.62814 -23.93290 -23.52160 -22.29404 -21.93305 -20.95773 -20.07428 -18.62242 -18.45967 -17.96229 -16.88061 -16.81641 -16.48635 -16.04819 -15.88322 -15.46422 -15.29799 -14.98648 -14.80905 -14.71598 -14.61419 -14.23490 -14.03459 -13.89699 -13.83340 -13.60758 -13.31264 -13.12996 -13.05548 -12.87236 -12.76853 -12.70890 -12.49543 -12.45709 -12.24699 -12.13258 -12.05262 -11.99594 -11.72175 -11.36225 -11.06743 -10.91641 -10.66640 -10.48602 -10.30520 -9.46371 -9.18911 -9.11620 -8.08049 -6.20460 0.34418 0.44979 1.39804 1.40646 1.51213 1.66334 2.03071 2.43797 2.81364 3.07805 3.18583 3.70503 3.87778 3.93331 3.99535 4.07622 4.12750 4.26749 4.32801 4.39982 4.43496 4.47793 4.56815 4.59818 4.61092 4.66414 4.69986 4.75583 4.83294 4.84149 4.89168 4.93449 4.95070 4.96644 5.13573 5.19318 5.20878 5.23991 5.34062 5.34841 5.48485 5.51837 5.55995 5.62658 5.64618 5.68364 6.00236 6.02676 6.14624 6.22862 6.31449 6.42829 6.53686 6.89306 7.29768 7.46465 8.96486 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002676 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.507450 B =10460.865112 C =11040.060053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.112 4.112 8 C 0.121 3.879 9 N -0.665 5.665 10 C 0.523 3.477 11 O -0.537 6.537 12 C 0.064 3.936 13 H 0.127 0.873 14 C -0.175 4.175 15 N -0.526 5.526 16 C 0.071 3.929 17 C -0.095 4.095 18 C 0.048 3.952 19 C -0.535 4.535 20 H 0.044 0.956 21 C 0.015 3.985 22 N -0.914 5.914 23 Si 0.951 3.049 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.273 1.273 27 C -0.097 4.097 28 C 0.071 3.929 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.421 0.579 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.024 0.976 45 H 0.067 0.933 46 H -0.007 1.007 47 H 0.261 0.739 48 H 0.038 0.962 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.945 7.388 14.957 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.104 4.104 7 C -0.168 4.168 8 C 0.028 3.972 9 N -0.314 5.314 10 C 0.311 3.689 11 O -0.412 6.412 12 C -0.048 4.048 13 H 0.145 0.855 14 C -0.234 4.234 15 N -0.251 5.251 16 C -0.057 4.057 17 C -0.133 4.133 18 C 0.030 3.970 19 C -0.573 4.573 20 H 0.062 0.938 21 C -0.183 4.183 22 N -0.554 5.554 23 Si 0.777 3.223 24 H -0.201 1.201 25 H -0.205 1.205 26 H -0.198 1.198 27 C -0.135 4.135 28 C -0.057 4.057 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.011 0.989 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.411 8.229 14.434 27.102 hybrid contribution -0.936 -0.909 -0.761 1.510 sum 20.475 7.321 13.673 25.687 Atomic orbital electron populations 1.20703 0.91483 1.01970 1.01582 1.20084 0.96231 0.93135 1.00181 1.21127 0.95117 0.97130 1.01369 1.21433 0.93720 0.99326 0.99493 1.21217 1.00960 0.91116 1.00656 1.20189 0.91572 0.97655 1.00966 1.20781 0.99831 0.92714 1.03482 1.17483 0.90644 0.85352 1.03704 1.43273 1.38656 1.17422 1.32057 1.20871 0.79338 0.87941 0.80761 1.90696 1.66675 1.48191 1.35645 1.21724 0.91381 0.91819 0.99827 0.85538 1.22349 1.00892 0.97369 1.02770 1.61748 1.11051 1.49165 1.03114 1.22098 0.92212 0.91645 0.99703 1.21413 0.96370 0.99643 0.95879 1.18627 0.92522 0.92615 0.93275 1.21563 1.01448 1.11768 1.22551 0.93809 1.25683 1.00940 0.94912 0.96805 1.69989 1.30395 1.16779 1.38226 0.85667 0.79212 0.78362 0.79071 1.20135 1.20499 1.19834 1.21507 0.95814 0.99128 0.97046 1.22047 0.96969 0.98983 0.87660 0.92578 0.92950 0.90848 0.84928 0.83544 0.83322 0.89219 0.91995 0.90276 0.73983 0.88473 0.91090 0.92966 0.95286 0.90060 0.95669 0.91485 0.98910 0.92982 0.94292 0.93710 0.90608 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 8.27 71.24 0.59 -2.09 16 2 C -0.09 -2.33 5.49 -19.74 -0.11 -2.43 16 3 C -0.13 -2.67 9.72 22.25 0.22 -2.45 16 4 C -0.12 -2.02 10.04 22.29 0.22 -1.80 16 5 C -0.12 -1.92 9.70 22.25 0.22 -1.70 16 6 C -0.10 -1.82 5.90 -19.74 -0.12 -1.94 16 7 C -0.11 -1.33 9.69 71.24 0.69 -0.64 16 8 C 0.12 2.71 5.80 38.16 0.22 2.93 16 9 N -0.66 -13.19 3.86 -303.50 -1.17 -14.36 16 10 C 0.52 14.08 5.15 87.66 0.45 14.53 16 11 O -0.54 -19.42 11.55 -3.07 -0.04 -19.45 16 12 C 0.06 1.63 2.70 44.17 0.12 1.75 16 13 H 0.13 2.53 7.88 -2.39 -0.02 2.51 16 14 C -0.17 -3.63 8.32 71.98 0.60 -3.03 16 15 N -0.53 -18.59 4.34 -875.46 -3.80 -22.40 16 16 C 0.07 2.64 5.21 86.32 0.45 3.09 16 17 C -0.09 -4.61 5.12 30.65 0.16 -4.45 16 18 C 0.05 2.54 2.16 -11.46 -0.02 2.51 16 19 C -0.54 -31.11 8.56 25.60 0.22 -30.90 16 20 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 21 C 0.02 0.86 5.31 84.65 0.45 1.31 16 22 N -0.91 -53.33 11.37 21.45 0.24 -53.09 16 23 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 27 C -0.10 -4.52 5.32 30.65 0.16 -4.36 16 28 C 0.07 2.76 4.19 86.33 0.36 3.12 16 29 H 0.06 1.84 7.09 -2.39 -0.02 1.82 16 30 H 0.05 1.43 6.31 -2.39 -0.02 1.41 16 31 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 32 H 0.13 2.33 8.06 -2.92 -0.02 2.31 16 33 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.81 7.46 -2.39 -0.02 0.79 16 37 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 38 H 0.42 5.28 8.72 -92.70 -0.81 4.47 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.54 7.05 -2.38 -0.02 1.52 16 41 H 0.05 1.27 6.44 -2.39 -0.02 1.26 16 42 H 0.03 1.07 7.09 -2.39 -0.02 1.06 16 43 H 0.08 2.62 7.96 -2.39 -0.02 2.60 16 44 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.07 3.61 6.17 -2.38 -0.01 3.59 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.26 14.43 8.31 -92.71 -0.77 13.65 16 48 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.08 3.00 5.89 -2.39 -0.01 2.99 16 51 H 0.03 1.07 6.58 -2.39 -0.02 1.06 16 Total: -1.00 -71.53 388.58 2.25 -69.28 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.11 Total: 19.48 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.88 Total: -26.56 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.73 Total: -89.85 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.04 Total: -19.45 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.53 2.25 -69.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542880752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.930 kcal (2) G-P(sol) polarization free energy of solvation -71.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds