Wall clock time and date at job start Tue Mar 31 2020 15:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34354 * 125.42034 * 2 1 4 4 C 1.46896 * 106.35718 * 179.97438 * 3 2 1 5 5 C 1.46446 * 127.06486 * 179.97438 * 4 3 2 6 6 O 1.21341 * 120.00129 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99547 * 359.97438 * 5 4 3 8 8 N 1.46900 * 109.46527 * 180.02562 * 7 5 4 9 9 C 1.46846 * 111.00101 * 294.20728 * 8 7 5 10 10 C 1.53035 * 109.52690 * 174.16763 * 9 8 7 11 11 C 1.53124 * 109.28200 * 59.17746 * 10 9 8 12 12 C 1.50691 * 109.57460 * 182.41640 * 11 10 9 13 13 H 1.08002 * 120.00240 * 119.71724 * 12 11 10 14 14 C 1.37884 * 120.00056 * 299.70845 * 12 11 10 15 15 N 1.31515 * 120.00197 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99570 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47324 * 89.99869 * 16 14 12 18 18 H 1.48510 * 109.46709 * 209.99630 * 16 14 12 19 19 H 1.48500 * 109.47280 * 329.99265 * 16 14 12 20 20 C 1.53117 * 109.15723 * 302.34967 * 11 10 9 21 21 C 1.46854 * 110.99763 * 170.00152 * 8 7 5 22 22 C 1.38226 * 105.87374 * 0.02562 * 4 3 2 23 23 C 1.50700 * 125.91681 * 180.02562 * 22 4 3 24 24 N 1.34486 * 108.15711 * 359.76843 * 22 4 3 25 25 C 1.46501 * 124.77528 * 180.21703 * 24 22 4 26 26 C 1.53000 * 117.49447 * 129.86959 * 25 24 22 27 27 C 1.53003 * 117.49585 * 61.21225 * 25 24 22 28 28 H 1.08996 * 109.46845 * 95.35198 * 1 2 3 29 29 H 1.08995 * 109.46618 * 335.35283 * 1 2 3 30 30 H 1.09000 * 109.46842 * 215.35341 * 1 2 3 31 31 H 1.07997 * 126.81726 * 359.92715 * 3 2 1 32 32 H 1.09001 * 109.47061 * 299.99669 * 7 5 4 33 33 H 1.08995 * 109.47365 * 60.00216 * 7 5 4 34 34 H 1.09002 * 109.46633 * 294.18175 * 9 8 7 35 35 H 1.08997 * 109.46629 * 54.14850 * 9 8 7 36 36 H 1.09008 * 109.49987 * 299.24065 * 10 9 8 37 37 H 1.09001 * 109.50891 * 179.12458 * 10 9 8 38 38 H 1.08999 * 109.52040 * 62.24793 * 11 10 9 39 39 H 0.96997 * 119.99733 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.50602 * 297.71295 * 20 11 10 41 41 H 1.09006 * 109.53413 * 177.61154 * 20 11 10 42 42 H 1.09002 * 109.45982 * 305.85542 * 21 8 7 43 43 H 1.09000 * 109.46059 * 65.83258 * 21 8 7 44 44 H 1.08994 * 109.47198 * 89.98000 * 23 22 4 45 45 H 1.09008 * 109.46823 * 209.97318 * 23 22 4 46 46 H 1.09001 * 109.47383 * 329.96986 * 23 22 4 47 47 H 1.09000 * 115.55203 * 275.54267 * 25 24 22 48 48 H 1.08999 * 117.50426 * 0.02562 * 26 25 24 49 49 H 1.09004 * 117.49556 * 145.02151 * 26 25 24 50 50 H 1.08995 * 117.49905 * 214.97714 * 27 25 24 51 51 H 1.09000 * 117.49829 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6741 0.6151 0.0006 5 6 4.8901 1.4313 0.0003 6 8 5.9795 0.8970 0.0014 7 6 4.7882 2.9349 -0.0013 8 7 6.1370 3.5170 -0.0019 9 6 6.8429 3.2107 1.2488 10 6 8.2881 3.7051 1.1548 11 6 8.2905 5.2153 0.9022 12 6 9.7093 5.6994 0.7493 13 1 10.0228 6.1715 -0.1701 14 6 10.6074 5.5398 1.7833 15 7 11.8455 5.9627 1.6502 16 14 10.0653 4.7228 3.3733 17 1 10.2925 3.2583 3.2799 18 1 10.8513 5.2744 4.5062 19 1 8.6213 4.9864 3.5981 20 6 7.5078 5.5116 -0.3801 21 6 6.0851 4.9649 -0.2415 22 6 3.5972 -0.7650 0.0004 23 6 4.7666 -1.7156 0.0014 24 7 2.2980 -1.1124 0.0048 25 6 1.8016 -2.4907 0.0106 26 6 0.7464 -2.8570 1.0561 27 6 2.1802 -3.3729 1.2020 28 1 -0.3633 -0.0959 -1.0232 29 1 -0.3632 0.9340 0.4286 30 1 -0.3633 -0.8382 0.5946 31 1 1.9563 2.1234 -0.0011 32 1 4.2514 3.2617 -0.8919 33 1 4.2506 3.2637 0.8881 34 1 6.3423 3.7081 2.0796 35 1 6.8376 2.1334 1.4145 36 1 8.7934 3.1979 0.3328 37 1 8.8074 3.4915 2.0890 38 1 7.8198 5.7259 1.7423 39 1 12.4773 5.8501 2.3775 40 1 8.0008 5.0328 -1.2262 41 1 7.4695 6.5887 -0.5431 42 1 5.5295 5.1616 -1.1584 43 1 5.5883 5.4541 0.5963 44 1 5.0478 -1.9446 1.0292 45 1 4.4875 -2.6355 -0.5125 46 1 5.6103 -1.2543 -0.5121 47 1 1.7292 -2.9684 -0.9665 48 1 0.4211 -2.0725 1.7394 49 1 -0.0202 -3.5761 0.7670 50 1 2.3564 -4.4310 1.0088 51 1 2.7989 -2.9278 1.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542882317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:40 Heat of formation + Delta-G solvation = 43.532563 kcal Electronic energy + Delta-G solvation = -28576.232586 eV Core-core repulsion = 24863.381623 eV Total energy + Delta-G solvation = -3712.850963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77523 -39.28865 -37.68164 -37.08546 -33.83230 -32.93212 -31.69549 -31.08402 -30.04359 -29.47373 -27.95221 -25.47823 -24.44765 -23.25144 -23.20561 -22.40997 -21.63764 -21.03410 -19.33444 -18.73481 -18.34845 -17.11049 -16.56805 -16.28928 -15.74736 -15.18290 -15.07408 -14.60830 -14.53392 -14.32320 -14.02673 -13.75562 -13.60942 -13.41839 -13.29251 -13.07015 -12.83702 -12.72909 -12.64934 -12.52023 -12.26720 -12.09123 -12.06289 -11.64974 -11.62099 -11.44213 -11.28456 -11.19524 -11.14433 -10.75960 -10.40058 -10.01360 -9.81250 -9.51832 -9.26513 -8.93334 -8.82026 -8.70833 -8.38426 -8.14505 -7.78365 -5.95263 -3.92608 1.44220 2.10688 2.35827 2.85699 3.31028 3.38356 3.46448 3.49372 3.95336 4.02809 4.12830 4.18582 4.48134 4.52823 4.59904 4.68482 4.84536 4.92363 5.03537 5.09369 5.19418 5.24142 5.35024 5.36798 5.39302 5.44905 5.46575 5.48831 5.55071 5.63435 5.67935 5.73326 5.81555 5.87733 6.01858 6.07114 6.16057 6.24728 6.38749 6.53020 6.62289 6.65450 6.87284 6.91005 6.98307 7.02561 7.11869 7.36773 7.52107 7.68093 7.79558 7.91705 8.03760 8.66518 9.09675 9.68538 11.18359 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002561 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.924073 B =10929.797713 C =11592.638917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.006 3.994 3 C -0.153 4.153 4 C -0.259 4.259 5 C 0.423 3.577 6 O -0.447 6.447 7 C 0.018 3.982 8 N -0.522 5.522 9 C 0.052 3.948 10 C -0.112 4.112 11 C 0.012 3.988 12 C -0.507 4.507 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.905 5.905 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.300 1.300 19 H -0.267 1.267 20 C -0.095 4.095 21 C 0.057 3.943 22 C 0.110 3.890 23 C -0.093 4.093 24 N -0.412 5.412 25 C 0.043 3.957 26 C -0.169 4.169 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.132 0.868 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.220 -18.923 -2.571 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.176 4.176 4 C -0.267 4.267 5 C 0.301 3.699 6 O -0.322 6.322 7 C -0.111 4.111 8 N -0.247 5.247 9 C -0.075 4.075 10 C -0.150 4.150 11 C -0.007 4.007 12 C -0.545 4.545 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.544 5.544 16 Si 0.718 3.282 17 H -0.205 1.205 18 H -0.227 1.227 19 H -0.193 1.193 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.006 4.006 23 C -0.150 4.150 24 N -0.089 5.089 25 C -0.060 4.060 26 C -0.206 4.206 27 C -0.206 4.206 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.149 0.851 48 H 0.125 0.875 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.353 -19.684 -2.869 33.821 hybrid contribution -0.813 -0.034 1.561 1.760 sum -28.166 -19.718 -1.309 34.407 Atomic orbital electron populations 1.20432 0.88068 1.03395 1.02563 1.20149 0.93521 0.85190 1.11145 1.21832 0.90900 0.97504 1.07401 1.21071 0.94534 0.91957 1.19144 1.21352 0.86634 0.90219 0.71690 1.90494 1.29773 1.75331 1.36578 1.22281 0.92539 0.93891 1.02421 1.61763 1.13884 1.12516 1.36494 1.22313 0.96276 1.00729 0.88195 1.21955 0.92800 0.99475 1.00735 1.19203 0.96526 0.91393 0.93597 1.21077 0.92842 1.38329 1.02215 0.90889 1.25020 0.94770 0.95195 0.98346 1.69909 1.03920 1.47679 1.32876 0.86851 0.78671 0.79420 0.83287 1.20515 1.22750 1.19271 1.21483 0.92527 0.99048 1.00259 1.22214 0.99314 0.86426 0.99088 1.20844 0.84339 0.94225 1.01176 1.20562 0.94591 0.96559 1.03284 1.42932 1.04980 1.04537 1.56480 1.21979 1.05233 0.82284 0.96492 1.23403 0.92940 1.03603 1.00643 1.23406 0.98276 0.99985 0.98957 0.91294 0.90230 0.91404 0.83568 0.88140 0.92378 0.96406 0.90539 0.91180 0.93641 0.96183 0.92858 0.91752 0.92397 0.91841 0.95650 0.90570 0.91825 0.88138 0.85081 0.87509 0.86984 0.86958 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.97 36.01 0.36 -0.15 16 2 C 0.01 0.06 6.73 -81.89 -0.55 -0.49 16 3 C -0.15 -1.65 10.58 -37.45 -0.40 -2.05 16 4 C -0.26 -3.42 6.29 -103.09 -0.65 -4.07 16 5 C 0.42 6.58 6.80 -31.00 -0.21 6.36 16 6 O -0.45 -8.25 12.86 5.50 0.07 -8.18 16 7 C 0.02 0.26 5.01 -4.97 -0.02 0.23 16 8 N -0.52 -9.65 4.40 -236.10 -1.04 -10.69 16 9 C 0.05 1.07 5.10 -3.84 -0.02 1.05 16 10 C -0.11 -2.68 4.84 -26.65 -0.13 -2.81 16 11 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 12 C -0.51 -14.87 9.15 -34.44 -0.32 -15.18 16 13 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 15 N -0.90 -28.75 13.96 55.43 0.77 -27.97 16 16 Si 0.89 23.18 24.36 -169.99 -4.14 19.04 16 17 H -0.28 -7.15 6.89 56.52 0.39 -6.76 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 19 H -0.27 -6.73 6.53 56.52 0.37 -6.36 16 20 C -0.10 -2.02 5.32 -26.65 -0.14 -2.16 16 21 C 0.06 1.01 5.46 -3.83 -0.02 0.99 16 22 C 0.11 1.29 6.87 -81.43 -0.56 0.73 16 23 C -0.09 -0.97 9.20 36.01 0.33 -0.64 16 24 N -0.41 -3.86 2.97 -100.60 -0.30 -4.16 16 25 C 0.04 0.26 5.67 -67.93 -0.39 -0.12 16 26 C -0.17 -0.70 8.82 -26.69 -0.24 -0.94 16 27 C -0.17 -0.82 10.01 -26.69 -0.27 -1.08 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.32 5.20 -51.93 -0.27 0.05 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.10 1.26 7.99 -51.93 -0.41 0.85 16 33 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.57 5.78 -51.93 -0.30 1.27 16 36 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 37 H 0.05 1.13 3.38 -51.93 -0.18 0.96 16 38 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 39 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 40 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.51 7.77 -51.92 -0.40 0.11 16 46 H 0.10 1.27 6.52 -51.93 -0.34 0.93 16 47 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.11 0.52 6.92 -51.93 -0.36 0.16 16 49 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -34.96 391.01 -10.78 -45.74 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.57 Total: -1.43 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.47 Total: -18.26 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.56 Total: -42.82 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.07 Total: -8.18 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.14 Total: 19.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.96 -10.78 -45.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.277 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds