Wall clock time and date at job start Tue Mar 31 2020 15:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34354 * 125.42034 * 2 1 4 4 C 1.46896 * 106.35718 * 179.97438 * 3 2 1 5 5 C 1.46446 * 127.06486 * 179.97438 * 4 3 2 6 6 O 1.21341 * 120.00129 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99547 * 359.97438 * 5 4 3 8 8 N 1.46900 * 109.46527 * 180.02562 * 7 5 4 9 9 C 1.46846 * 111.00101 * 294.20728 * 8 7 5 10 10 C 1.53035 * 109.52690 * 174.16763 * 9 8 7 11 11 C 1.53124 * 109.28200 * 59.17746 * 10 9 8 12 12 C 1.50691 * 109.57460 * 182.41640 * 11 10 9 13 13 H 1.08002 * 120.00240 * 119.71724 * 12 11 10 14 14 C 1.37884 * 120.00056 * 299.70845 * 12 11 10 15 15 N 1.31515 * 120.00197 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99570 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47324 * 89.99869 * 16 14 12 18 18 H 1.48510 * 109.46709 * 209.99630 * 16 14 12 19 19 H 1.48500 * 109.47280 * 329.99265 * 16 14 12 20 20 C 1.53117 * 109.15723 * 302.34967 * 11 10 9 21 21 C 1.46854 * 110.99763 * 170.00152 * 8 7 5 22 22 C 1.38226 * 105.87374 * 0.02562 * 4 3 2 23 23 C 1.50700 * 125.91681 * 180.02562 * 22 4 3 24 24 N 1.34486 * 108.15711 * 359.76843 * 22 4 3 25 25 C 1.46501 * 124.77528 * 180.21703 * 24 22 4 26 26 C 1.53000 * 117.49447 * 129.86959 * 25 24 22 27 27 C 1.53003 * 117.49585 * 61.21225 * 25 24 22 28 28 H 1.08996 * 109.46845 * 95.35198 * 1 2 3 29 29 H 1.08995 * 109.46618 * 335.35283 * 1 2 3 30 30 H 1.09000 * 109.46842 * 215.35341 * 1 2 3 31 31 H 1.07997 * 126.81726 * 359.92715 * 3 2 1 32 32 H 1.09001 * 109.47061 * 299.99669 * 7 5 4 33 33 H 1.08995 * 109.47365 * 60.00216 * 7 5 4 34 34 H 1.09002 * 109.46633 * 294.18175 * 9 8 7 35 35 H 1.08997 * 109.46629 * 54.14850 * 9 8 7 36 36 H 1.09008 * 109.49987 * 299.24065 * 10 9 8 37 37 H 1.09001 * 109.50891 * 179.12458 * 10 9 8 38 38 H 1.08999 * 109.52040 * 62.24793 * 11 10 9 39 39 H 0.96997 * 119.99733 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.50602 * 297.71295 * 20 11 10 41 41 H 1.09006 * 109.53413 * 177.61154 * 20 11 10 42 42 H 1.09002 * 109.45982 * 305.85542 * 21 8 7 43 43 H 1.09000 * 109.46059 * 65.83258 * 21 8 7 44 44 H 1.08994 * 109.47198 * 89.98000 * 23 22 4 45 45 H 1.09008 * 109.46823 * 209.97318 * 23 22 4 46 46 H 1.09001 * 109.47383 * 329.96986 * 23 22 4 47 47 H 1.09000 * 115.55203 * 275.54267 * 25 24 22 48 48 H 1.08999 * 117.50426 * 0.02562 * 26 25 24 49 49 H 1.09004 * 117.49556 * 145.02151 * 26 25 24 50 50 H 1.08995 * 117.49905 * 214.97714 * 27 25 24 51 51 H 1.09000 * 117.49829 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6741 0.6151 0.0006 5 6 4.8901 1.4313 0.0003 6 8 5.9795 0.8970 0.0014 7 6 4.7882 2.9349 -0.0013 8 7 6.1370 3.5170 -0.0019 9 6 6.8429 3.2107 1.2488 10 6 8.2881 3.7051 1.1548 11 6 8.2905 5.2153 0.9022 12 6 9.7093 5.6994 0.7493 13 1 10.0228 6.1715 -0.1701 14 6 10.6074 5.5398 1.7833 15 7 11.8455 5.9627 1.6502 16 14 10.0653 4.7228 3.3733 17 1 10.2925 3.2583 3.2799 18 1 10.8513 5.2744 4.5062 19 1 8.6213 4.9864 3.5981 20 6 7.5078 5.5116 -0.3801 21 6 6.0851 4.9649 -0.2415 22 6 3.5972 -0.7650 0.0004 23 6 4.7666 -1.7156 0.0014 24 7 2.2980 -1.1124 0.0048 25 6 1.8016 -2.4907 0.0106 26 6 0.7464 -2.8570 1.0561 27 6 2.1802 -3.3729 1.2020 28 1 -0.3633 -0.0959 -1.0232 29 1 -0.3632 0.9340 0.4286 30 1 -0.3633 -0.8382 0.5946 31 1 1.9563 2.1234 -0.0011 32 1 4.2514 3.2617 -0.8919 33 1 4.2506 3.2637 0.8881 34 1 6.3423 3.7081 2.0796 35 1 6.8376 2.1334 1.4145 36 1 8.7934 3.1979 0.3328 37 1 8.8074 3.4915 2.0890 38 1 7.8198 5.7259 1.7423 39 1 12.4773 5.8501 2.3775 40 1 8.0008 5.0328 -1.2262 41 1 7.4695 6.5887 -0.5431 42 1 5.5295 5.1616 -1.1584 43 1 5.5883 5.4541 0.5963 44 1 5.0478 -1.9446 1.0292 45 1 4.4875 -2.6355 -0.5125 46 1 5.6103 -1.2543 -0.5121 47 1 1.7292 -2.9684 -0.9665 48 1 0.4211 -2.0725 1.7394 49 1 -0.0202 -3.5761 0.7670 50 1 2.3564 -4.4310 1.0088 51 1 2.7989 -2.9278 1.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542882317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:39 Heat of formation + Delta-G solvation = 22.354694 kcal Electronic energy + Delta-G solvation = -28577.150928 eV Core-core repulsion = 24863.381623 eV Total energy + Delta-G solvation = -3713.769305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49561 -40.58648 -39.06047 -37.65210 -35.67380 -33.74576 -33.57080 -32.00658 -31.70623 -30.20027 -29.31830 -26.99591 -25.48210 -24.14664 -24.04015 -23.55540 -22.98529 -22.15453 -20.49353 -20.09554 -19.27512 -18.82010 -17.73056 -17.32107 -16.93005 -16.37069 -16.20549 -16.10433 -15.46428 -15.36846 -15.08461 -14.97746 -14.84878 -14.80372 -14.43958 -14.23543 -14.11985 -13.90162 -13.70606 -13.44543 -13.31532 -13.20759 -13.08599 -12.87138 -12.78920 -12.56722 -12.49316 -12.23318 -12.15850 -12.09268 -11.68902 -11.61607 -11.54516 -11.40063 -11.04007 -10.87343 -10.65071 -10.29459 -9.58052 -9.17065 -8.92785 -8.30343 -6.32352 0.45996 1.29045 1.30973 1.37833 1.42594 1.73682 2.31238 2.32563 2.48692 2.85948 3.04932 3.44858 3.52093 3.71958 3.72486 3.90708 4.01961 4.09186 4.15782 4.17603 4.21411 4.36048 4.48419 4.50531 4.54145 4.59684 4.62294 4.65437 4.68287 4.71239 4.73434 4.75535 4.79708 4.82196 4.88791 4.93512 4.96410 4.99172 5.03828 5.05809 5.16713 5.18640 5.25650 5.35400 5.52851 5.67450 5.77495 5.86054 6.11877 6.15981 6.24730 6.33380 6.36833 6.74175 6.92948 7.32407 8.86856 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002561 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.924073 B =10929.797713 C =11592.638917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.010 3.990 3 C -0.168 4.168 4 C -0.291 4.291 5 C 0.420 3.580 6 O -0.491 6.491 7 C 0.020 3.980 8 N -0.540 5.540 9 C 0.064 3.936 10 C -0.109 4.109 11 C 0.012 3.988 12 C -0.515 4.515 13 H 0.034 0.966 14 C 0.010 3.990 15 N -0.951 5.951 16 Si 0.949 3.051 17 H -0.273 1.273 18 H -0.295 1.295 19 H -0.248 1.248 20 C -0.093 4.093 21 C 0.065 3.935 22 C 0.099 3.901 23 C -0.087 4.087 24 N -0.408 5.408 25 C 0.021 3.979 26 C -0.151 4.151 27 C -0.170 4.170 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.021 0.979 39 H 0.265 0.735 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.146 0.854 48 H 0.101 0.899 49 H 0.138 0.862 50 H 0.132 0.868 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.868 -20.588 -1.922 38.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.299 4.299 5 C 0.302 3.698 6 O -0.370 6.370 7 C -0.107 4.107 8 N -0.266 5.266 9 C -0.063 4.063 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.553 4.553 13 H 0.052 0.948 14 C -0.186 4.186 15 N -0.592 5.592 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.222 1.222 19 H -0.172 1.172 20 C -0.131 4.131 21 C -0.062 4.062 22 C -0.019 4.019 23 C -0.144 4.144 24 N -0.083 5.083 25 C -0.080 4.080 26 C -0.188 4.188 27 C -0.207 4.207 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.163 0.837 48 H 0.119 0.881 49 H 0.156 0.844 50 H 0.150 0.850 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -32.057 -21.350 -2.233 38.581 hybrid contribution 0.610 0.454 1.253 1.466 sum -31.448 -20.895 -0.979 37.769 Atomic orbital electron populations 1.20544 0.85410 1.04662 1.03595 1.20735 0.95117 0.84752 1.09134 1.22079 0.89829 0.98917 1.08211 1.21057 0.94737 0.92701 1.21418 1.21714 0.86872 0.90851 0.70392 1.90482 1.31321 1.76001 1.39191 1.22383 0.90591 0.93265 1.04498 1.61648 1.16381 1.13133 1.35390 1.22068 0.94138 1.00453 0.89682 1.21813 0.95267 0.98438 0.99132 1.19170 0.94123 0.91873 0.95547 1.21416 0.95479 1.37679 1.00683 0.94784 1.25872 0.94697 0.95930 1.02128 1.70050 1.05318 1.49493 1.34297 0.85836 0.79296 0.78441 0.78821 1.19965 1.22210 1.17217 1.21404 0.94590 0.99596 0.97519 1.22144 0.96796 0.85906 1.01329 1.20987 0.85660 0.94142 1.01068 1.20469 0.93591 0.97125 1.03226 1.43168 1.04161 1.06090 1.54929 1.22340 1.06985 0.80871 0.97836 1.23508 0.92937 1.03425 0.98938 1.23456 0.98802 1.00709 0.97729 0.90274 0.89115 0.90018 0.81958 0.85501 0.90444 0.95457 0.90836 0.93524 0.94776 0.96101 0.92626 0.93554 0.91828 0.88480 0.94271 0.90520 0.89563 0.90765 0.83674 0.88056 0.84400 0.85011 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.97 71.24 0.71 0.02 16 2 C 0.01 0.16 6.73 40.95 0.28 0.43 16 3 C -0.17 -3.26 10.58 23.65 0.25 -3.01 16 4 C -0.29 -7.42 6.29 -18.87 -0.12 -7.54 16 5 C 0.42 12.85 6.80 27.83 0.19 13.04 16 6 O -0.49 -18.59 12.86 -3.22 -0.04 -18.63 16 7 C 0.02 0.56 5.01 85.56 0.43 0.98 16 8 N -0.54 -19.12 4.40 -900.90 -3.96 -23.09 16 9 C 0.06 2.58 5.10 86.33 0.44 3.02 16 10 C -0.11 -5.23 4.84 30.65 0.15 -5.08 16 11 C 0.01 0.59 1.75 -11.46 -0.02 0.57 16 12 C -0.51 -31.29 9.15 25.60 0.23 -31.06 16 13 H 0.03 2.26 7.99 -2.91 -0.02 2.24 16 14 C 0.01 0.63 5.45 84.66 0.46 1.09 16 15 N -0.95 -62.47 13.96 21.45 0.30 -62.18 16 16 Si 0.95 48.44 24.36 68.60 1.67 50.11 16 17 H -0.27 -13.64 6.89 99.48 0.69 -12.95 16 18 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 19 H -0.25 -11.79 6.53 99.48 0.65 -11.14 16 20 C -0.09 -3.92 5.32 30.65 0.16 -3.76 16 21 C 0.07 2.15 5.46 86.33 0.47 2.62 16 22 C 0.10 2.25 6.87 42.15 0.29 2.54 16 23 C -0.09 -1.82 9.20 71.24 0.66 -1.16 16 24 N -0.41 -6.81 2.97 -472.19 -1.40 -8.21 16 25 C 0.02 0.20 5.67 44.99 0.26 0.46 16 26 C -0.15 -0.73 8.82 30.62 0.27 -0.46 16 27 C -0.17 -1.22 10.01 30.62 0.31 -0.91 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.45 5.20 -2.39 -0.01 0.43 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.13 2.77 7.99 -2.39 -0.02 2.75 16 33 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 3.02 5.78 -2.39 -0.01 3.00 16 36 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.03 1.69 3.38 -2.39 -0.01 1.69 16 38 H 0.02 1.05 7.19 -2.39 -0.02 1.03 16 39 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.10 2.58 8.01 -2.39 -0.02 2.56 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 1.32 7.77 -2.38 -0.02 1.30 16 46 H 0.07 1.97 6.52 -2.39 -0.02 1.95 16 47 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.10 0.65 6.92 -2.39 -0.02 0.63 16 49 H 0.14 -0.01 8.14 -2.38 -0.02 -0.03 16 50 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.72 391.01 2.81 -76.92 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.83 Total: 13.28 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 5.41 Total: -28.20 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -5.07 Total: -93.47 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.67 Total: 50.11 kcal Total: -79.72 2.81 -76.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.272 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds