Wall clock time and date at job start Tue Mar 31 2020 15:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99768 * 2 1 4 4 N 1.46499 * 109.47197 * 125.00118 * 3 2 1 5 5 C 1.36488 * 124.77782 * 269.97884 * 4 3 2 6 6 C 1.50700 * 125.41679 * 0.02562 * 5 4 3 7 7 C 1.34354 * 109.16241 * 179.77033 * 5 4 3 8 8 C 1.46897 * 106.35453 * 0.37542 * 7 5 4 9 9 C 1.46453 * 127.06142 * 179.89337 * 8 7 5 10 10 O 1.21351 * 120.00175 * 179.68809 * 9 8 7 11 11 C 1.50699 * 120.00125 * 359.40631 * 9 8 7 12 12 N 1.46898 * 109.47345 * 174.84443 * 11 9 8 13 13 C 1.46848 * 110.99923 * 169.18277 * 12 11 9 14 14 C 1.53041 * 109.51972 * 185.84052 * 13 12 11 15 15 C 1.53118 * 109.27777 * 300.81529 * 14 13 12 16 16 C 1.50694 * 109.52175 * 177.56179 * 15 14 13 17 17 H 1.08000 * 120.00117 * 240.31498 * 16 15 14 18 18 C 1.37879 * 120.00198 * 60.32183 * 16 15 14 19 19 N 1.31512 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00220 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47088 * 89.99931 * 20 18 16 22 22 H 1.48499 * 109.47420 * 209.99946 * 20 18 16 23 23 H 1.48501 * 109.47420 * 330.00155 * 20 18 16 24 24 C 1.53118 * 109.15783 * 57.65822 * 15 14 13 25 25 C 1.46845 * 110.99709 * 293.39020 * 12 11 9 26 26 C 1.34490 * 124.77204 * 89.99745 * 4 3 2 27 27 C 1.50701 * 125.92179 * 359.95092 * 26 4 3 28 28 H 1.08001 * 120.00110 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99949 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99999 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46871 * 5.00285 * 3 2 1 32 32 H 1.09004 * 109.47158 * 245.00286 * 3 2 1 33 33 H 1.09005 * 109.46846 * 90.00573 * 6 5 4 34 34 H 1.09001 * 109.46817 * 209.99861 * 6 5 4 35 35 H 1.08992 * 109.47449 * 330.00416 * 6 5 4 36 36 H 1.08002 * 126.82381 * 180.26304 * 7 5 4 37 37 H 1.09004 * 109.46996 * 294.84577 * 11 9 8 38 38 H 1.09003 * 109.47127 * 54.84107 * 11 9 8 39 39 H 1.09004 * 109.46267 * 305.85114 * 13 12 11 40 40 H 1.08999 * 109.46557 * 65.82470 * 13 12 11 41 41 H 1.09008 * 109.50087 * 180.87998 * 14 13 12 42 42 H 1.08990 * 109.50805 * 60.76487 * 14 13 12 43 43 H 1.08994 * 109.52635 * 297.75638 * 15 14 13 44 44 H 0.97001 * 120.00701 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.50441 * 182.40389 * 24 15 14 46 46 H 1.09005 * 109.53611 * 62.30752 * 24 15 14 47 47 H 1.08996 * 109.46466 * 294.17649 * 25 12 11 48 48 H 1.08992 * 109.46041 * 54.16068 * 25 12 11 49 49 H 1.09000 * 109.46486 * 270.00774 * 27 26 4 50 50 H 1.08991 * 109.47167 * 30.01208 * 27 26 4 51 51 H 1.09001 * 109.47203 * 150.01549 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.6930 1.8057 2.3756 6 6 1.3629 2.3770 2.7945 7 6 3.7696 1.6766 3.1689 8 6 4.8253 1.0802 2.3396 9 6 6.1898 0.7460 2.7534 10 8 6.9603 0.2487 1.9587 11 6 6.6389 1.0254 4.1645 12 7 7.9933 0.4918 4.3621 13 6 8.5648 0.9631 5.6300 14 6 10.0226 0.5090 5.7339 15 6 10.0823 -1.0193 5.6625 16 6 11.5198 -1.4696 5.7041 17 1 11.9333 -2.0331 4.8807 18 6 12.3073 -1.1623 6.7933 19 7 11.8038 -0.4766 7.7963 20 14 14.0890 -1.7210 6.8452 21 1 14.9532 -0.6765 6.2391 22 1 14.4971 -1.9439 8.2555 23 1 14.2333 -2.9868 6.0822 24 6 9.4373 -1.4868 4.3549 25 6 7.9965 -0.9749 4.2908 26 6 4.2645 0.8935 1.0901 27 6 4.9568 0.3009 -0.1102 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 0.7281 1.5774 3.1766 34 1 1.5172 3.1225 3.5746 35 1 0.8813 2.8442 1.9356 36 1 3.8446 1.9573 4.2091 37 1 6.6435 2.1015 4.3380 38 1 5.9543 0.5474 4.8652 39 1 8.5200 2.0516 5.6662 40 1 7.9951 0.5484 6.4616 41 1 10.4419 0.8456 6.6821 42 1 10.5959 0.9346 4.9104 43 1 9.5417 -1.4450 6.5078 44 1 12.3578 -0.2601 8.5625 45 1 9.4384 -2.5762 4.3176 46 1 10.0013 -1.0933 3.5091 47 1 7.4294 -1.3805 5.1287 48 1 7.5392 -1.2940 3.3544 49 1 4.8093 -0.7790 -0.1181 50 1 4.5387 0.7314 -1.0200 51 1 6.0230 0.5216 -0.0604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543808190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:17 Heat of formation + Delta-G solvation = 25.769926 kcal Electronic energy + Delta-G solvation = -28218.583584 eV Core-core repulsion = 24504.962374 eV Total energy + Delta-G solvation = -3713.621209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63516 -39.06044 -37.31062 -35.56543 -33.72401 -32.89709 -31.82281 -31.20675 -29.64602 -29.40524 -28.05793 -26.25900 -25.14823 -24.27406 -22.15625 -21.83869 -21.13195 -20.71204 -19.48201 -18.50853 -18.17278 -16.71268 -16.27491 -16.09224 -15.42720 -15.37150 -14.94513 -14.69164 -14.44520 -14.19431 -13.89355 -13.66086 -13.57669 -13.33930 -13.22394 -12.92773 -12.75419 -12.61934 -12.54601 -12.44663 -12.30354 -12.22963 -12.03814 -11.66759 -11.48461 -11.29911 -11.17304 -10.84826 -10.69129 -10.36044 -10.17267 -10.06021 -9.88197 -9.35171 -9.24535 -8.76244 -8.68366 -8.57980 -8.18297 -8.08693 -7.57341 -5.87145 -3.91551 1.42567 1.56454 2.18273 2.67801 3.38696 3.39471 3.44698 3.48786 4.11782 4.22490 4.30303 4.49138 4.54167 4.59079 4.63937 4.82929 4.85699 4.92921 5.06181 5.21891 5.26900 5.41687 5.42794 5.48350 5.51183 5.62271 5.66896 5.74869 5.78474 5.85924 5.92678 5.96915 6.00759 6.06214 6.22977 6.26987 6.34897 6.53779 6.70378 6.72303 6.80601 6.96132 7.04876 7.05838 7.24313 7.32133 7.55703 7.75792 7.80397 7.95786 8.12309 8.19275 8.28447 8.61008 9.12158 9.72022 11.19107 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.002171 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.653351 B =12892.835273 C =13394.133562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.125 3.875 4 N -0.433 5.433 5 C 0.004 3.996 6 C -0.081 4.081 7 C -0.151 4.151 8 C -0.256 4.256 9 C 0.424 3.576 10 O -0.448 6.448 11 C 0.017 3.983 12 N -0.523 5.523 13 C 0.058 3.942 14 C -0.103 4.103 15 C 0.047 3.953 16 C -0.506 4.506 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.103 4.103 25 C 0.060 3.940 26 C 0.103 3.897 27 C -0.094 4.094 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.458 6.388 -14.279 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.003 3.997 4 N -0.109 5.109 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.175 4.175 8 C -0.265 4.265 9 C 0.301 3.699 10 O -0.323 6.323 11 C -0.112 4.112 12 N -0.248 5.248 13 C -0.069 4.069 14 C -0.141 4.141 15 C 0.028 3.972 16 C -0.544 4.544 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.141 4.141 25 C -0.068 4.068 26 C -0.014 4.014 27 C -0.151 4.151 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.036 0.964 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.926 6.387 -15.130 30.690 hybrid contribution 0.223 -0.496 0.885 1.039 sum -25.703 5.891 -14.246 29.971 Atomic orbital electron populations 1.23943 0.95530 1.02519 0.98265 1.23152 0.96358 0.98292 1.01810 1.20979 0.92472 0.97047 0.89159 1.43530 1.09747 1.47928 1.09732 1.20134 0.98078 1.07392 0.84706 1.20306 0.91541 1.00544 1.01489 1.21839 0.91691 1.04964 0.98963 1.21120 0.96773 1.14669 0.93889 1.21413 0.84563 0.74412 0.89478 1.90486 1.54627 1.33245 1.53987 1.22287 0.91970 1.01791 0.95179 1.61818 1.17279 1.10073 1.35626 1.22300 0.98760 0.98141 0.87707 1.21652 0.90682 0.99104 1.02710 1.18696 0.95080 0.91986 0.91397 1.21237 0.95991 1.33892 1.03328 0.92768 1.24972 0.98186 0.95305 0.95675 1.69879 1.35906 1.39752 1.07771 0.86638 0.85584 0.79064 0.76947 1.20776 1.21418 1.20034 1.21634 0.93108 0.98334 1.01032 1.22180 0.99146 0.86354 0.99097 1.20845 0.83947 0.99642 0.96936 1.20574 1.02158 1.00451 0.91921 0.88199 0.87664 0.86579 0.88692 0.88269 0.91182 0.90098 0.92163 0.83599 0.88293 0.92620 0.92657 0.95967 0.88963 0.93767 0.96241 0.93219 0.93449 0.92378 0.96446 0.91533 0.90462 0.92021 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 14.32 29.01 0.42 -0.31 16 2 C -0.18 -1.02 9.85 -36.03 -0.35 -1.38 16 3 C 0.12 0.74 6.00 -5.19 -0.03 0.71 16 4 N -0.43 -4.06 2.66 -108.89 -0.29 -4.35 16 5 C 0.00 0.03 6.84 -81.89 -0.56 -0.53 16 6 C -0.08 -0.50 10.05 36.01 0.36 -0.14 16 7 C -0.15 -1.71 10.58 -37.45 -0.40 -2.11 16 8 C -0.26 -3.49 6.29 -103.09 -0.65 -4.14 16 9 C 0.42 6.83 6.67 -31.00 -0.21 6.62 16 10 O -0.45 -8.42 13.22 5.50 0.07 -8.34 16 11 C 0.02 0.27 5.01 -4.98 -0.02 0.24 16 12 N -0.52 -10.41 4.35 -236.11 -1.03 -11.44 16 13 C 0.06 1.20 5.46 -3.83 -0.02 1.18 16 14 C -0.10 -2.57 5.12 -26.65 -0.14 -2.71 16 15 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 16 C -0.51 -14.54 8.56 -34.44 -0.29 -14.83 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 19 N -0.89 -26.16 11.37 55.43 0.63 -25.53 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.10 -2.41 5.32 -26.65 -0.14 -2.55 16 25 C 0.06 1.23 5.12 -3.83 -0.02 1.21 16 26 C 0.10 1.20 6.94 -81.43 -0.56 0.64 16 27 C -0.09 -0.95 9.54 36.01 0.34 -0.61 16 28 H 0.10 0.31 7.84 -52.49 -0.41 -0.10 16 29 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.09 0.41 6.53 -51.93 -0.34 0.07 16 32 H 0.10 0.49 6.87 -51.93 -0.36 0.13 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.28 6.92 -51.93 -0.36 -0.07 16 36 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.10 1.41 7.97 -51.93 -0.41 1.00 16 38 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.05 1.04 8.01 -51.93 -0.42 0.62 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 2.50 6.18 -51.92 -0.32 2.18 16 42 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 1.34 6.05 -51.93 -0.31 1.03 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 51 H 0.10 1.25 6.52 -51.93 -0.34 0.91 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -33.02 403.01 -10.80 -43.82 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.67 Total: -1.17 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.57 Total: -16.05 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.69 Total: -41.31 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.02 -10.80 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.588 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds