Wall clock time and date at job start Tue Mar 31 2020 15:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99768 * 2 1 4 4 N 1.46499 * 109.47197 * 125.00118 * 3 2 1 5 5 C 1.36488 * 124.77782 * 269.97884 * 4 3 2 6 6 C 1.50700 * 125.41679 * 0.02562 * 5 4 3 7 7 C 1.34354 * 109.16241 * 179.77033 * 5 4 3 8 8 C 1.46897 * 106.35453 * 0.37542 * 7 5 4 9 9 C 1.46453 * 127.06142 * 179.89337 * 8 7 5 10 10 O 1.21351 * 120.00175 * 179.68809 * 9 8 7 11 11 C 1.50699 * 120.00125 * 359.40631 * 9 8 7 12 12 N 1.46898 * 109.47345 * 174.84443 * 11 9 8 13 13 C 1.46848 * 110.99923 * 169.18277 * 12 11 9 14 14 C 1.53041 * 109.51972 * 185.84052 * 13 12 11 15 15 C 1.53118 * 109.27777 * 300.81529 * 14 13 12 16 16 C 1.50694 * 109.52175 * 177.56179 * 15 14 13 17 17 H 1.08000 * 120.00117 * 240.31498 * 16 15 14 18 18 C 1.37879 * 120.00198 * 60.32183 * 16 15 14 19 19 N 1.31512 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00220 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47088 * 89.99931 * 20 18 16 22 22 H 1.48499 * 109.47420 * 209.99946 * 20 18 16 23 23 H 1.48501 * 109.47420 * 330.00155 * 20 18 16 24 24 C 1.53118 * 109.15783 * 57.65822 * 15 14 13 25 25 C 1.46845 * 110.99709 * 293.39020 * 12 11 9 26 26 C 1.34490 * 124.77204 * 89.99745 * 4 3 2 27 27 C 1.50701 * 125.92179 * 359.95092 * 26 4 3 28 28 H 1.08001 * 120.00110 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99949 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99999 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46871 * 5.00285 * 3 2 1 32 32 H 1.09004 * 109.47158 * 245.00286 * 3 2 1 33 33 H 1.09005 * 109.46846 * 90.00573 * 6 5 4 34 34 H 1.09001 * 109.46817 * 209.99861 * 6 5 4 35 35 H 1.08992 * 109.47449 * 330.00416 * 6 5 4 36 36 H 1.08002 * 126.82381 * 180.26304 * 7 5 4 37 37 H 1.09004 * 109.46996 * 294.84577 * 11 9 8 38 38 H 1.09003 * 109.47127 * 54.84107 * 11 9 8 39 39 H 1.09004 * 109.46267 * 305.85114 * 13 12 11 40 40 H 1.08999 * 109.46557 * 65.82470 * 13 12 11 41 41 H 1.09008 * 109.50087 * 180.87998 * 14 13 12 42 42 H 1.08990 * 109.50805 * 60.76487 * 14 13 12 43 43 H 1.08994 * 109.52635 * 297.75638 * 15 14 13 44 44 H 0.97001 * 120.00701 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.50441 * 182.40389 * 24 15 14 46 46 H 1.09005 * 109.53611 * 62.30752 * 24 15 14 47 47 H 1.08996 * 109.46466 * 294.17649 * 25 12 11 48 48 H 1.08992 * 109.46041 * 54.16068 * 25 12 11 49 49 H 1.09000 * 109.46486 * 270.00774 * 27 26 4 50 50 H 1.08991 * 109.47167 * 30.01208 * 27 26 4 51 51 H 1.09001 * 109.47203 * 150.01549 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.6930 1.8057 2.3756 6 6 1.3629 2.3770 2.7945 7 6 3.7696 1.6766 3.1689 8 6 4.8253 1.0802 2.3396 9 6 6.1898 0.7460 2.7534 10 8 6.9603 0.2487 1.9587 11 6 6.6389 1.0254 4.1645 12 7 7.9933 0.4918 4.3621 13 6 8.5648 0.9631 5.6300 14 6 10.0226 0.5090 5.7339 15 6 10.0823 -1.0193 5.6625 16 6 11.5198 -1.4696 5.7041 17 1 11.9333 -2.0331 4.8807 18 6 12.3073 -1.1623 6.7933 19 7 11.8038 -0.4766 7.7963 20 14 14.0890 -1.7210 6.8452 21 1 14.9532 -0.6765 6.2391 22 1 14.4971 -1.9439 8.2555 23 1 14.2333 -2.9868 6.0822 24 6 9.4373 -1.4868 4.3549 25 6 7.9965 -0.9749 4.2908 26 6 4.2645 0.8935 1.0901 27 6 4.9568 0.3009 -0.1102 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 0.7281 1.5774 3.1766 34 1 1.5172 3.1225 3.5746 35 1 0.8813 2.8442 1.9356 36 1 3.8446 1.9573 4.2091 37 1 6.6435 2.1015 4.3380 38 1 5.9543 0.5474 4.8652 39 1 8.5200 2.0516 5.6662 40 1 7.9951 0.5484 6.4616 41 1 10.4419 0.8456 6.6821 42 1 10.5959 0.9346 4.9104 43 1 9.5417 -1.4450 6.5078 44 1 12.3578 -0.2601 8.5625 45 1 9.4384 -2.5762 4.3176 46 1 10.0013 -1.0933 3.5091 47 1 7.4294 -1.3805 5.1287 48 1 7.5392 -1.2940 3.3544 49 1 4.8093 -0.7790 -0.1181 50 1 4.5387 0.7314 -1.0200 51 1 6.0230 0.5216 -0.0604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543808190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:16 Heat of formation + Delta-G solvation = 8.226674 kcal Electronic energy + Delta-G solvation = -28219.344316 eV Core-core repulsion = 24504.962374 eV Total energy + Delta-G solvation = -3714.381942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.41126 -40.45845 -38.89863 -36.05739 -35.64398 -33.63527 -33.32446 -32.37467 -31.45104 -30.15017 -29.37381 -27.47565 -26.27629 -25.48151 -23.85264 -23.36732 -22.43521 -21.16806 -20.39479 -20.32011 -19.18180 -18.43722 -17.51015 -16.91268 -16.71549 -16.42720 -16.18503 -16.08045 -15.80267 -15.39554 -15.12155 -14.79783 -14.53060 -14.42354 -14.17211 -14.13576 -14.07481 -14.06282 -13.66446 -13.46088 -13.19368 -13.03415 -12.99157 -12.91937 -12.81405 -12.77468 -12.58070 -12.29440 -12.21773 -12.07015 -12.01698 -11.87866 -11.36979 -10.93304 -10.66424 -10.54683 -10.43260 -10.25222 -9.55869 -9.14430 -8.90174 -8.06793 -6.19839 0.47719 1.07553 1.41197 1.41958 1.42074 1.52496 2.04860 2.34568 2.44862 2.90141 3.19346 3.47569 3.71167 3.84230 3.86862 3.96800 4.11969 4.20275 4.23472 4.26953 4.36821 4.43024 4.47217 4.49891 4.56407 4.61510 4.65630 4.70949 4.75090 4.76764 4.83227 4.90880 4.93728 4.94767 4.98601 5.05477 5.11877 5.14927 5.22524 5.33082 5.36791 5.55715 5.57068 5.63422 5.64731 5.87151 5.99834 6.02228 6.16188 6.26835 6.30960 6.37429 6.42607 6.89773 6.94533 7.46998 8.98012 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.002171 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.653351 B =12892.835273 C =13394.133562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.197 4.197 3 C 0.120 3.880 4 N -0.426 5.426 5 C 0.010 3.990 6 C -0.080 4.080 7 C -0.171 4.171 8 C -0.291 4.291 9 C 0.424 3.576 10 O -0.489 6.489 11 C 0.018 3.982 12 N -0.537 5.537 13 C 0.069 3.931 14 C -0.095 4.095 15 C 0.045 3.955 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.271 1.271 24 C -0.096 4.096 25 C 0.071 3.929 26 C 0.098 3.902 27 C -0.090 4.090 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.023 0.977 41 H 0.067 0.933 42 H 0.026 0.974 43 H -0.008 1.008 44 H 0.261 0.739 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.021 0.979 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.148 7.463 -15.118 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C 0.000 4.000 4 N -0.102 5.102 5 C -0.097 4.097 6 C -0.137 4.137 7 C -0.193 4.193 8 C -0.300 4.300 9 C 0.305 3.695 10 O -0.367 6.367 11 C -0.110 4.110 12 N -0.262 5.262 13 C -0.058 4.058 14 C -0.133 4.133 15 C 0.027 3.973 16 C -0.572 4.572 17 H 0.065 0.935 18 C -0.186 4.186 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.134 4.134 25 C -0.056 4.056 26 C -0.020 4.020 27 C -0.147 4.147 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.174 0.826 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.657 7.473 -15.973 33.649 hybrid contribution 0.923 -0.822 1.103 1.656 sum -27.734 6.651 -14.871 32.165 Atomic orbital electron populations 1.24153 0.95033 1.03679 0.95790 1.23039 0.96847 0.97612 1.04082 1.21281 0.92414 0.98008 0.88299 1.43799 1.09292 1.46413 1.10689 1.20695 0.98945 1.05758 0.84321 1.20425 0.89656 1.00984 1.02625 1.22046 0.91726 1.05802 0.99755 1.21036 0.96181 1.17151 0.95592 1.21618 0.85479 0.73447 0.88982 1.90472 1.55892 1.35562 1.54783 1.22392 0.89845 1.02888 0.95903 1.61708 1.20188 1.09438 1.34898 1.22094 0.95885 0.99499 0.88333 1.21423 0.93445 0.97945 1.00498 1.18653 0.94044 0.92930 0.91677 1.21553 0.97494 1.34590 1.03606 0.93464 1.25743 1.02401 0.95254 0.95232 1.70002 1.37369 1.40077 1.08099 0.85605 0.80351 0.78733 0.77245 1.20156 1.20570 1.19573 1.21500 0.94655 0.98480 0.98746 1.21991 0.97006 0.87204 0.99439 1.21006 0.85060 0.99231 0.96695 1.20524 1.00682 1.00683 0.92847 0.86296 0.87247 0.88129 0.86322 0.87276 0.90379 0.89119 0.90177 0.82557 0.86270 0.91037 0.90189 0.95902 0.91445 0.95491 0.99022 0.92984 0.93239 0.93810 0.96130 0.90992 0.90335 0.89189 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 14.32 67.78 0.97 0.13 16 2 C -0.20 -1.81 9.85 25.64 0.25 -1.56 16 3 C 0.12 1.07 6.00 85.63 0.51 1.58 16 4 N -0.43 -7.08 2.66 -498.41 -1.33 -8.40 16 5 C 0.01 0.17 6.84 40.95 0.28 0.45 16 6 C -0.08 -0.68 10.05 71.24 0.72 0.03 16 7 C -0.17 -3.61 10.58 23.65 0.25 -3.36 16 8 C -0.29 -7.81 6.29 -18.87 -0.12 -7.92 16 9 C 0.42 13.75 6.67 27.83 0.19 13.94 16 10 O -0.49 -18.91 13.22 -3.25 -0.04 -18.96 16 11 C 0.02 0.56 5.01 85.56 0.43 0.99 16 12 N -0.54 -21.43 4.35 -900.93 -3.92 -25.34 16 13 C 0.07 2.87 5.46 86.33 0.47 3.34 16 14 C -0.09 -4.86 5.12 30.65 0.16 -4.71 16 15 C 0.05 2.49 2.16 -11.46 -0.02 2.46 16 16 C -0.53 -31.65 8.56 25.60 0.22 -31.43 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.70 5.31 84.66 0.45 1.15 16 19 N -0.92 -54.67 11.37 21.45 0.24 -54.43 16 20 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 C -0.10 -4.62 5.32 30.65 0.16 -4.46 16 25 C 0.07 2.99 5.12 86.33 0.44 3.43 16 26 C 0.10 2.23 6.94 42.15 0.29 2.52 16 27 C -0.09 -1.81 9.54 71.24 0.68 -1.13 16 28 H 0.12 0.22 7.84 -2.91 -0.02 0.20 16 29 H 0.11 0.53 8.06 -2.91 -0.02 0.51 16 30 H 0.10 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.12 0.51 6.53 -2.38 -0.02 0.49 16 32 H 0.11 0.75 6.87 -2.39 -0.02 0.74 16 33 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.39 6.92 -2.39 -0.02 0.37 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.12 3.22 7.97 -2.39 -0.02 3.20 16 38 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 39 H 0.08 2.91 8.01 -2.39 -0.02 2.90 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 3.78 6.18 -2.38 -0.01 3.77 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 48 H 0.07 2.96 6.05 -2.39 -0.01 2.95 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.09 1.21 6.92 -2.39 -0.02 1.20 16 51 H 0.08 1.96 6.52 -2.39 -0.02 1.95 16 Total: -1.00 -73.79 403.01 4.20 -69.59 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.89 Total: 14.32 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 6.33 Total: -24.54 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -5.00 Total: -88.17 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.79 4.20 -69.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.813 kcal (2) G-P(sol) polarization free energy of solvation -73.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds