Wall clock time and date at job start Tue Mar 31 2020 15:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.96868 * 2 1 4 4 C 1.38244 * 120.10949 * 179.77006 * 3 2 1 5 5 C 1.38169 * 120.05803 * 0.50909 * 4 3 2 6 6 C 1.50695 * 120.03044 * 179.76842 * 5 4 3 7 7 N 1.46899 * 109.47435 * 259.72445 * 6 5 4 8 8 C 1.46899 * 111.00368 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47027 * 304.99943 * 9 8 7 11 11 C 1.47210 * 109.47204 * 64.99865 * 9 8 7 12 12 N 7.54948 * 142.37508 * 289.15579 * 2 1 3 13 13 C 1.52996 * 109.47286 * 184.99665 * 9 8 7 14 14 C 1.50701 * 109.47236 * 174.99863 * 13 9 8 15 15 H 1.07988 * 119.99916 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99480 * 180.02562 * 14 13 9 17 17 N 1.31504 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99320 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 90.00155 * 18 16 14 20 20 H 1.48499 * 109.46743 * 209.99645 * 18 16 14 21 21 H 1.48501 * 109.47186 * 329.99889 * 18 16 14 22 22 C 1.38709 * 119.93781 * 359.49610 * 5 4 3 23 23 O 1.35911 * 120.05226 * 180.27294 * 22 5 4 24 24 C 1.42898 * 116.99849 * 175.39492 * 23 22 5 25 25 C 1.52997 * 109.47212 * 63.24190 * 24 23 22 26 26 C 1.53001 * 109.47121 * 183.24200 * 24 23 22 27 27 C 1.53005 * 109.47401 * 303.23946 * 24 23 22 28 28 C 1.38118 * 119.97585 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47076 * 269.97347 * 1 2 3 30 30 H 1.09000 * 109.47775 * 29.97291 * 1 2 3 31 31 H 1.09005 * 109.47375 * 149.97662 * 1 2 3 32 32 H 1.07993 * 119.94539 * 0.02951 * 3 2 1 33 33 H 1.08005 * 119.97096 * 180.25648 * 4 3 2 34 34 H 1.08997 * 109.47297 * 139.72521 * 6 5 4 35 35 H 1.09002 * 109.47461 * 19.72411 * 6 5 4 36 36 H 1.00898 * 111.00106 * 303.95785 * 7 6 5 37 37 H 1.09002 * 109.46658 * 299.99968 * 8 7 6 38 38 H 1.08997 * 109.47256 * 59.99867 * 8 7 6 39 39 H 1.08997 * 109.47272 * 295.00384 * 13 9 8 40 40 H 1.09003 * 109.47038 * 54.99633 * 13 9 8 41 41 H 0.97004 * 120.00249 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47392 * 77.61361 * 25 24 23 43 43 H 1.08997 * 109.47270 * 197.61436 * 25 24 23 44 44 H 1.09007 * 109.46939 * 317.61086 * 25 24 23 45 45 H 1.09004 * 109.47052 * 59.99904 * 26 24 23 46 46 H 1.08995 * 109.47411 * 180.02562 * 26 24 23 47 47 H 1.08995 * 109.46822 * 300.00136 * 26 24 23 48 48 H 1.09005 * 109.46850 * 47.88928 * 27 24 23 49 49 H 1.08996 * 109.47323 * 167.89240 * 27 24 23 50 50 H 1.09000 * 109.47023 * 287.89627 * 27 24 23 51 51 H 1.07999 * 120.02990 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5802 1.2014 0.0048 5 6 4.2752 0.0073 -0.0010 6 6 5.7821 0.0117 -0.0011 7 7 6.2725 -0.2273 -1.3650 8 6 7.7410 -0.2303 -1.4035 9 6 8.2131 -0.4810 -2.8371 10 1 7.7666 -1.4024 -3.2108 11 6 7.8034 0.6448 -3.6926 12 7 7.4863 1.5123 -4.3537 13 6 9.7376 -0.6082 -2.8572 14 6 10.1927 -0.9764 -4.2458 15 1 9.4672 -1.1063 -5.0351 16 6 11.5355 -1.1476 -4.5085 17 7 12.4189 -0.9889 -3.5474 18 14 12.0996 -1.6033 -6.2299 19 1 12.3589 -0.3663 -7.0096 20 1 13.3462 -2.4059 -6.1460 21 1 11.0423 -2.4000 -6.9027 22 6 3.5845 -1.1957 -0.0011 23 8 4.2659 -2.3717 -0.0012 24 6 3.4929 -3.5692 0.1009 25 6 2.5832 -3.6950 -1.1228 26 6 4.4299 -4.7770 0.1661 27 6 2.6381 -3.5180 1.3689 28 6 2.1970 -1.1964 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6564 2.1324 0.0005 33 1 4.1174 2.1384 0.0090 34 1 6.1478 -0.7744 0.6594 35 1 6.1427 0.9785 0.3505 36 1 5.8996 -1.0874 -1.7378 37 1 8.1154 0.7346 -1.0616 38 1 8.1199 -1.0184 -0.7528 39 1 10.1854 0.3426 -2.5682 40 1 10.0468 -1.3833 -2.1560 41 1 13.3636 -1.1090 -3.7322 42 1 3.1671 -4.0411 -1.9756 43 1 1.7881 -4.4103 -0.9124 44 1 2.1462 -2.7230 -1.3520 45 1 5.0781 -4.6874 1.0379 46 1 3.8404 -5.6905 0.2436 47 1 5.0389 -4.8135 -0.7371 48 1 2.1308 -2.5549 1.4263 49 1 1.8978 -4.3175 1.3405 50 1 3.2767 -3.6449 2.2430 51 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562458420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:53 Heat of formation + Delta-G solvation = 6.797398 kcal Electronic energy + Delta-G solvation = -28281.853073 eV Core-core repulsion = 24567.409153 eV Total energy + Delta-G solvation = -3714.443920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.11867 -38.34906 -37.21828 -35.47788 -34.37236 -33.54104 -32.62817 -31.20273 -30.55062 -28.36864 -27.75732 -27.39432 -26.19316 -23.97895 -23.22448 -22.31547 -21.70398 -21.07139 -20.20716 -17.19637 -17.11063 -16.49052 -16.35301 -15.98534 -15.58720 -14.85102 -14.73187 -14.58860 -14.44245 -14.34361 -14.09093 -13.92605 -13.47609 -13.34407 -13.13190 -12.82302 -12.62643 -12.58135 -12.29726 -12.27292 -12.06990 -12.03660 -11.96396 -11.91276 -11.72263 -11.67868 -11.45911 -11.13445 -11.00192 -10.84671 -10.80709 -10.63611 -10.57509 -10.48037 -10.17201 -9.51144 -9.19621 -8.76431 -8.42719 -8.25001 -8.04192 -6.06463 -4.09243 1.18621 1.35804 3.00502 3.32003 3.38392 3.41849 3.56688 3.82181 3.91517 4.36995 4.41464 4.46006 4.53616 4.60394 4.66257 4.67498 4.83945 4.95393 5.03611 5.11880 5.16593 5.21684 5.30888 5.31682 5.32686 5.35004 5.40128 5.44367 5.50234 5.54066 5.58212 5.63481 5.71850 5.73654 5.78632 5.86417 5.90930 5.92017 6.02679 6.12113 6.21385 6.40706 6.46287 6.51274 6.56524 6.73568 7.19860 7.35749 7.47300 7.57373 7.63806 7.89202 8.27283 8.66068 8.95659 9.55900 11.04496 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002677 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.021459 B =10458.864328 C =11486.610401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.160 4.160 4 C -0.061 4.061 5 C -0.114 4.114 6 C 0.109 3.891 7 N -0.686 5.686 8 C 0.067 3.933 9 C 0.010 3.990 10 H 0.098 0.902 11 C 0.257 3.743 12 N -0.481 5.481 13 C 0.032 3.968 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.145 3.855 23 O -0.302 6.302 24 C 0.110 3.890 25 C -0.199 4.199 26 C -0.139 4.139 27 C -0.202 4.202 28 C -0.224 4.224 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.343 0.657 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.023 -5.602 14.169 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.178 4.178 4 C -0.080 4.080 5 C -0.116 4.116 6 C -0.020 4.020 7 N -0.317 5.317 8 C -0.063 4.063 9 C -0.012 4.012 10 H 0.116 0.884 11 C -0.060 4.060 12 N -0.158 5.158 13 C -0.007 4.007 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.099 3.901 23 O -0.216 6.216 24 C 0.073 3.927 25 C -0.256 4.256 26 C -0.196 4.196 27 C -0.259 4.259 28 C -0.242 4.242 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.141 -3.699 13.013 27.673 hybrid contribution 0.556 -1.508 -0.319 1.638 sum -23.586 -5.207 12.694 27.286 Atomic orbital electron populations 1.20796 0.91341 1.02773 1.02205 1.19696 0.95762 0.92689 0.97611 1.20905 0.94132 0.97407 1.05369 1.20881 0.93775 0.97027 0.96267 1.19185 0.95804 0.90339 1.06226 1.20640 0.89535 1.01333 0.90481 1.60616 1.08412 1.42421 1.20300 1.22065 0.86544 1.01899 0.95826 1.19208 1.01159 0.91109 0.89740 0.88444 1.28856 0.90720 0.93762 0.92684 1.80963 1.11760 1.12059 1.10989 1.19162 0.84692 0.98544 0.98262 1.21156 0.92264 1.47764 0.95128 0.92520 1.24952 0.96808 0.95212 0.97021 1.69937 1.01678 1.49444 1.32032 0.86599 0.78208 0.78574 0.84738 1.20648 1.21130 1.19752 1.18720 0.90327 0.85559 0.95532 1.86173 1.35864 1.11895 1.87637 1.21762 0.91927 0.84073 0.94972 1.22883 1.00327 1.04082 0.98334 1.21816 0.99288 0.94735 1.03760 1.22935 1.00906 1.04305 0.97717 1.21647 0.93263 0.99333 1.09976 0.91193 0.91387 0.91730 0.86212 0.85382 0.93980 0.90516 0.83844 0.90587 0.93297 0.95566 0.94459 0.92834 0.91190 0.91205 0.89895 0.91477 0.90588 0.91079 0.89673 0.91131 0.91577 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.06 -0.55 5.88 -104.65 -0.62 -1.17 16 3 C -0.16 -1.64 9.70 -39.56 -0.38 -2.02 16 4 C -0.06 -0.70 9.66 -39.60 -0.38 -1.08 16 5 C -0.11 -1.41 5.41 -104.48 -0.56 -1.98 16 6 C 0.11 1.39 5.48 -4.98 -0.03 1.36 16 7 N -0.69 -10.01 6.19 -115.06 -0.71 -10.72 16 8 C 0.07 1.05 5.05 -3.83 -0.02 1.03 16 9 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 10 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 11 C 0.26 5.59 13.67 -20.76 -0.28 5.31 16 12 N -0.48 -11.34 18.54 42.15 0.78 -10.56 16 13 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 14 C -0.52 -14.23 8.60 -34.44 -0.30 -14.53 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.14 1.68 6.03 -39.22 -0.24 1.44 16 23 O -0.30 -3.42 8.97 -19.46 -0.17 -3.59 16 24 C 0.11 0.95 1.11 -90.62 -0.10 0.85 16 25 C -0.20 -1.57 8.12 37.16 0.30 -1.26 16 26 C -0.14 -1.07 8.74 37.16 0.32 -0.74 16 27 C -0.20 -1.47 8.08 37.16 0.30 -1.17 16 28 C -0.22 -2.23 5.38 -39.44 -0.21 -2.45 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.34 8.03 -52.48 -0.42 0.92 16 34 H 0.04 0.53 7.85 -51.93 -0.41 0.12 16 35 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 36 H 0.34 4.95 8.67 -39.29 -0.34 4.61 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 43 H 0.07 0.41 7.84 -51.93 -0.41 0.01 16 44 H 0.08 0.72 4.75 -51.92 -0.25 0.48 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.67 4.47 -51.93 -0.23 0.44 16 49 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 50 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 51 H 0.15 1.21 3.61 -52.49 -0.19 1.02 16 LS Contribution 411.60 15.07 6.20 6.20 Total: -1.00 -31.46 411.60 -8.97 -40.43 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.51 Total: 1.38 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.28 Total: -14.60 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.81 Total: -46.40 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.17 Total: -3.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.46 -8.97 -40.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562458420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.227 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds