Wall clock time and date at job start Tue Mar 31 2020 15:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.96868 * 2 1 4 4 C 1.38244 * 120.10949 * 179.77006 * 3 2 1 5 5 C 1.38169 * 120.05803 * 0.50909 * 4 3 2 6 6 C 1.50695 * 120.03044 * 179.76842 * 5 4 3 7 7 N 1.46899 * 109.47435 * 259.72445 * 6 5 4 8 8 C 1.46899 * 111.00368 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47027 * 304.99943 * 9 8 7 11 11 C 1.47210 * 109.47204 * 64.99865 * 9 8 7 12 12 N 7.54948 * 142.37508 * 289.15579 * 2 1 3 13 13 C 1.52996 * 109.47286 * 184.99665 * 9 8 7 14 14 C 1.50701 * 109.47236 * 174.99863 * 13 9 8 15 15 H 1.07988 * 119.99916 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99480 * 180.02562 * 14 13 9 17 17 N 1.31504 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99320 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 90.00155 * 18 16 14 20 20 H 1.48499 * 109.46743 * 209.99645 * 18 16 14 21 21 H 1.48501 * 109.47186 * 329.99889 * 18 16 14 22 22 C 1.38709 * 119.93781 * 359.49610 * 5 4 3 23 23 O 1.35911 * 120.05226 * 180.27294 * 22 5 4 24 24 C 1.42898 * 116.99849 * 175.39492 * 23 22 5 25 25 C 1.52997 * 109.47212 * 63.24190 * 24 23 22 26 26 C 1.53001 * 109.47121 * 183.24200 * 24 23 22 27 27 C 1.53005 * 109.47401 * 303.23946 * 24 23 22 28 28 C 1.38118 * 119.97585 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47076 * 269.97347 * 1 2 3 30 30 H 1.09000 * 109.47775 * 29.97291 * 1 2 3 31 31 H 1.09005 * 109.47375 * 149.97662 * 1 2 3 32 32 H 1.07993 * 119.94539 * 0.02951 * 3 2 1 33 33 H 1.08005 * 119.97096 * 180.25648 * 4 3 2 34 34 H 1.08997 * 109.47297 * 139.72521 * 6 5 4 35 35 H 1.09002 * 109.47461 * 19.72411 * 6 5 4 36 36 H 1.00898 * 111.00106 * 303.95785 * 7 6 5 37 37 H 1.09002 * 109.46658 * 299.99968 * 8 7 6 38 38 H 1.08997 * 109.47256 * 59.99867 * 8 7 6 39 39 H 1.08997 * 109.47272 * 295.00384 * 13 9 8 40 40 H 1.09003 * 109.47038 * 54.99633 * 13 9 8 41 41 H 0.97004 * 120.00249 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47392 * 77.61361 * 25 24 23 43 43 H 1.08997 * 109.47270 * 197.61436 * 25 24 23 44 44 H 1.09007 * 109.46939 * 317.61086 * 25 24 23 45 45 H 1.09004 * 109.47052 * 59.99904 * 26 24 23 46 46 H 1.08995 * 109.47411 * 180.02562 * 26 24 23 47 47 H 1.08995 * 109.46822 * 300.00136 * 26 24 23 48 48 H 1.09005 * 109.46850 * 47.88928 * 27 24 23 49 49 H 1.08996 * 109.47323 * 167.89240 * 27 24 23 50 50 H 1.09000 * 109.47023 * 287.89627 * 27 24 23 51 51 H 1.07999 * 120.02990 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5802 1.2014 0.0048 5 6 4.2752 0.0073 -0.0010 6 6 5.7821 0.0117 -0.0011 7 7 6.2725 -0.2273 -1.3650 8 6 7.7410 -0.2303 -1.4035 9 6 8.2131 -0.4810 -2.8371 10 1 7.7666 -1.4024 -3.2108 11 6 7.8034 0.6448 -3.6926 12 7 7.4863 1.5123 -4.3537 13 6 9.7376 -0.6082 -2.8572 14 6 10.1927 -0.9764 -4.2458 15 1 9.4672 -1.1063 -5.0351 16 6 11.5355 -1.1476 -4.5085 17 7 12.4189 -0.9889 -3.5474 18 14 12.0996 -1.6033 -6.2299 19 1 12.3589 -0.3663 -7.0096 20 1 13.3462 -2.4059 -6.1460 21 1 11.0423 -2.4000 -6.9027 22 6 3.5845 -1.1957 -0.0011 23 8 4.2659 -2.3717 -0.0012 24 6 3.4929 -3.5692 0.1009 25 6 2.5832 -3.6950 -1.1228 26 6 4.4299 -4.7770 0.1661 27 6 2.6381 -3.5180 1.3689 28 6 2.1970 -1.1964 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6564 2.1324 0.0005 33 1 4.1174 2.1384 0.0090 34 1 6.1478 -0.7744 0.6594 35 1 6.1427 0.9785 0.3505 36 1 5.8996 -1.0874 -1.7378 37 1 8.1154 0.7346 -1.0616 38 1 8.1199 -1.0184 -0.7528 39 1 10.1854 0.3426 -2.5682 40 1 10.0468 -1.3833 -2.1560 41 1 13.3636 -1.1090 -3.7322 42 1 3.1671 -4.0411 -1.9756 43 1 1.7881 -4.4103 -0.9124 44 1 2.1462 -2.7230 -1.3520 45 1 5.0781 -4.6874 1.0379 46 1 3.8404 -5.6905 0.2436 47 1 5.0389 -4.8135 -0.7371 48 1 2.1308 -2.5549 1.4263 49 1 1.8978 -4.3175 1.3405 50 1 3.2767 -3.6449 2.2430 51 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562458420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:52 Heat of formation + Delta-G solvation = -9.903855 kcal Electronic energy + Delta-G solvation = -28282.577294 eV Core-core repulsion = 24567.409153 eV Total energy + Delta-G solvation = -3715.168140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86586 -39.16957 -38.65144 -36.78488 -35.59449 -35.03610 -33.86696 -32.61013 -31.29908 -29.48469 -28.33204 -28.12852 -27.61661 -25.16517 -24.06333 -23.63074 -23.45481 -21.87100 -20.91408 -18.70786 -18.36068 -17.85389 -17.28302 -16.98330 -16.65441 -16.30511 -15.73833 -15.62346 -15.52041 -15.33098 -15.06483 -14.93292 -14.59343 -14.27802 -14.08881 -14.02578 -13.81622 -13.75156 -13.39983 -13.23703 -13.17516 -13.08049 -12.98854 -12.85847 -12.70201 -12.67913 -12.60498 -12.49257 -12.46449 -12.33935 -12.23492 -11.90965 -11.61858 -11.48215 -11.38897 -11.25101 -11.12362 -10.56006 -9.58050 -9.30029 -8.92099 -8.19559 -6.27939 0.38536 0.56039 1.39727 1.41821 1.51249 2.06254 2.13537 2.30222 2.41412 2.74692 3.15512 3.30449 3.46981 3.73885 3.86443 3.87756 3.92752 4.00760 4.10025 4.18421 4.25362 4.33793 4.39751 4.59794 4.61210 4.64739 4.71800 4.73742 4.76694 4.77308 4.80691 4.84913 4.86120 4.90358 4.92879 4.96871 4.99884 5.05936 5.17066 5.29049 5.30210 5.32871 5.45865 5.46460 5.61389 5.62237 5.72367 5.78827 5.97427 6.02712 6.21537 6.47026 6.60626 6.82604 6.92650 7.40438 8.91475 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002677 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.021459 B =10458.864328 C =11486.610401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.169 4.169 4 C -0.074 4.074 5 C -0.138 4.138 6 C 0.115 3.885 7 N -0.691 5.691 8 C 0.079 3.921 9 C 0.021 3.979 10 H 0.115 0.885 11 C 0.266 3.734 12 N -0.513 5.513 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.284 1.284 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.136 3.864 23 O -0.319 6.319 24 C 0.101 3.899 25 C -0.197 4.197 26 C -0.138 4.138 27 C -0.197 4.197 28 C -0.225 4.225 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.344 0.656 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.001 0.999 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.061 0.939 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.076 -6.840 14.366 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.187 4.187 4 C -0.093 4.093 5 C -0.139 4.139 6 C -0.013 4.013 7 N -0.323 5.323 8 C -0.051 4.051 9 C -0.001 4.001 10 H 0.132 0.868 11 C -0.050 4.050 12 N -0.191 5.191 13 C 0.001 3.999 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.188 1.188 22 C 0.090 3.910 23 O -0.234 6.234 24 C 0.064 3.936 25 C -0.253 4.253 26 C -0.195 4.195 27 C -0.254 4.254 28 C -0.243 4.243 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.163 0.837 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.080 0.920 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -26.210 -4.944 13.215 29.766 hybrid contribution 1.147 -1.138 -0.349 1.654 sum -25.063 -6.082 12.865 28.821 Atomic orbital electron populations 1.20856 0.89153 1.03665 1.03316 1.20092 0.97429 0.92269 0.96235 1.21166 0.93803 0.98573 1.05163 1.21032 0.94598 0.96937 0.96722 1.19229 0.95414 0.91193 1.08099 1.20583 0.90268 1.01262 0.89219 1.60580 1.07362 1.42541 1.21786 1.21874 0.87581 1.02248 0.93443 1.19154 0.98314 0.90991 0.91609 0.86765 1.29327 0.89919 0.93627 0.92119 1.80957 1.12801 1.13169 1.12169 1.18977 0.87484 0.96912 0.96570 1.21547 0.92439 1.47236 0.96512 0.92832 1.25723 0.97153 0.95391 1.00523 1.70031 1.01985 1.50509 1.33821 0.85686 0.78189 0.78205 0.80468 1.20992 1.20236 1.18819 1.18847 0.91042 0.85474 0.95654 1.86148 1.37021 1.12525 1.87690 1.22019 0.92293 0.83307 0.95949 1.22862 1.00653 1.04138 0.97695 1.21848 0.99358 0.95383 1.02929 1.22896 1.00999 1.04769 0.96740 1.21885 0.92738 1.00329 1.09303 0.89849 0.90701 0.90685 0.84597 0.85206 0.94037 0.90385 0.83729 0.90923 0.91838 0.98014 0.94690 0.92679 0.92020 0.88882 0.90798 0.92011 0.88393 0.92177 0.90262 0.88930 0.92034 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.23 0.71 -0.54 16 2 C -0.06 -1.05 5.88 -19.88 -0.12 -1.17 16 3 C -0.17 -3.28 9.70 22.28 0.22 -3.07 16 4 C -0.07 -1.69 9.66 22.25 0.22 -1.47 16 5 C -0.14 -3.39 5.41 -19.77 -0.11 -3.50 16 6 C 0.11 2.92 5.48 85.56 0.47 3.39 16 7 N -0.69 -19.91 6.19 -517.95 -3.21 -23.12 16 8 C 0.08 2.44 5.05 86.30 0.44 2.87 16 9 C 0.02 0.80 2.35 -12.60 -0.03 0.77 16 10 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 11 C 0.27 11.58 13.67 89.45 1.22 12.80 16 12 N -0.51 -24.26 18.54 20.01 0.37 -23.89 16 13 C 0.04 1.88 4.42 29.85 0.13 2.01 16 14 C -0.54 -29.25 8.60 25.60 0.22 -29.03 16 15 H 0.05 2.88 7.59 -2.92 -0.02 2.86 16 16 C 0.01 0.61 5.46 84.66 0.46 1.08 16 17 N -0.92 -53.84 13.29 21.45 0.28 -53.55 16 18 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 22 C 0.14 3.07 6.03 22.51 0.14 3.21 16 23 O -0.32 -7.07 8.97 -92.55 -0.83 -7.90 16 24 C 0.10 1.60 1.11 -10.79 -0.01 1.59 16 25 C -0.20 -2.74 8.12 71.98 0.58 -2.15 16 26 C -0.14 -1.95 8.74 71.98 0.63 -1.32 16 27 C -0.20 -2.48 8.08 71.98 0.58 -1.90 16 28 C -0.22 -4.17 5.38 22.36 0.12 -4.05 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.07 0.68 8.08 -2.38 -0.02 0.66 16 32 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.13 2.74 8.03 -2.91 -0.02 2.72 16 34 H 0.04 1.05 7.85 -2.39 -0.02 1.03 16 35 H 0.08 1.91 8.00 -2.39 -0.02 1.89 16 36 H 0.34 9.79 8.67 -89.70 -0.78 9.01 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 42 H 0.06 0.95 8.01 -2.39 -0.02 0.94 16 43 H 0.09 0.83 7.84 -2.39 -0.02 0.81 16 44 H 0.07 1.17 4.75 -2.38 -0.01 1.16 16 45 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 1.10 4.47 -2.38 -0.01 1.09 16 49 H 0.09 0.73 7.89 -2.39 -0.02 0.72 16 50 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 51 H 0.16 2.36 3.61 -2.91 -0.01 2.35 16 Total: -1.00 -66.96 411.60 4.66 -62.30 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.14 Total: 20.53 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 5.87 Total: -20.47 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -2.55 Total: -100.57 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.83 Total: -7.90 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.96 4.66 -62.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562458420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.392 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds