Wall clock time and date at job start Tue Mar 31 2020 15:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03702 * 2 1 4 4 C 1.38262 * 120.07009 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14401 * 359.95827 * 4 3 2 6 6 C 1.38089 * 120.06808 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03531 * 180.23388 * 2 1 3 8 8 N 1.39926 * 120.07134 * 359.97438 * 7 2 1 9 9 C 1.34779 * 119.99825 * 205.07067 * 8 7 2 10 10 O 1.21283 * 120.00197 * 5.52293 * 9 8 7 11 11 C 1.50697 * 119.99592 * 185.52083 * 9 8 7 12 12 C 1.53000 * 109.47033 * 179.97438 * 11 9 8 13 13 N 1.46900 * 109.47208 * 180.02562 * 12 11 9 14 14 C 1.46845 * 111.00109 * 294.20969 * 13 12 11 15 15 C 1.53043 * 109.52436 * 174.15886 * 14 13 12 16 16 C 1.53113 * 109.27663 * 59.18256 * 15 14 13 17 17 C 1.52996 * 109.57722 * 182.40587 * 16 15 14 18 18 C 1.50696 * 109.47633 * 294.71927 * 17 16 15 19 19 H 1.08000 * 119.99732 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00532 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99457 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47313 * 90.00027 * 22 20 18 24 24 H 1.48498 * 109.46962 * 210.00152 * 22 20 18 25 25 H 1.48503 * 109.47160 * 329.99858 * 22 20 18 26 26 C 1.53121 * 109.16125 * 302.34612 * 16 15 14 27 27 C 1.46846 * 110.99839 * 170.00460 * 13 12 11 28 28 H 1.08993 * 109.47033 * 90.00013 * 1 2 3 29 29 H 1.09003 * 109.47126 * 209.99492 * 1 2 3 30 30 H 1.08994 * 109.47014 * 329.99607 * 1 2 3 31 31 H 1.07999 * 119.95988 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.92574 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.96760 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.03662 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00189 * 25.07000 * 8 7 2 36 36 H 1.08997 * 109.47544 * 300.00419 * 11 9 8 37 37 H 1.08999 * 109.47178 * 60.00197 * 11 9 8 38 38 H 1.08997 * 109.47467 * 300.00674 * 12 11 9 39 39 H 1.09007 * 109.46617 * 60.00430 * 12 11 9 40 40 H 1.08997 * 109.46726 * 294.17871 * 14 13 12 41 41 H 1.09004 * 109.46099 * 54.14819 * 14 13 12 42 42 H 1.08995 * 109.50308 * 299.24411 * 15 14 13 43 43 H 1.08996 * 109.50071 * 179.12562 * 15 14 13 44 44 H 1.09005 * 109.52531 * 62.24864 * 16 15 14 45 45 H 1.09003 * 109.46683 * 54.71464 * 17 16 15 46 46 H 1.08998 * 109.47287 * 174.71337 * 17 16 15 47 47 H 0.96999 * 119.99233 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.50274 * 297.71105 * 26 16 15 49 49 H 1.09005 * 109.50164 * 177.59492 * 26 16 15 50 50 H 1.08999 * 109.46294 * 305.85048 * 27 13 12 51 51 H 1.09003 * 109.46647 * 65.83841 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0002 6 6 3.5909 -1.1978 0.0012 7 6 2.2020 -1.2021 -0.0049 8 7 1.5046 -2.4152 -0.0093 9 6 2.0856 -3.5282 0.4808 10 8 3.1717 -3.4599 1.0162 11 6 1.3856 -4.8576 0.3634 12 6 2.2537 -5.9485 0.9936 13 7 1.5716 -7.2444 0.8787 14 6 0.3408 -7.2641 1.6793 15 6 -0.4157 -8.5695 1.4223 16 6 0.4785 -9.7543 1.7979 17 6 -0.2487 -11.0641 1.4874 18 6 -1.4589 -11.1898 2.3765 19 1 -1.6863 -10.4133 3.0919 20 6 -2.2757 -12.2961 2.2768 21 7 -1.9989 -13.2413 1.4054 22 14 -3.7754 -12.4522 3.3796 23 1 -4.9483 -11.8343 2.7105 24 1 -4.0525 -13.8880 3.6380 25 1 -3.5176 -11.7583 4.6670 26 6 1.7743 -9.6833 0.9852 27 6 2.4673 -8.3456 1.2549 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6584 2.1311 0.0004 32 1 4.1193 2.1329 -0.0010 33 1 5.3562 0.0050 -0.0002 34 1 4.1344 -2.1312 0.0010 35 1 0.6031 -2.4551 -0.3651 36 1 0.4275 -4.8107 0.8812 37 1 1.2190 -5.0889 -0.6886 38 1 3.2115 -5.9952 0.4756 39 1 2.4206 -5.7173 2.0458 40 1 0.5942 -7.1935 2.7371 41 1 -0.2881 -6.4189 1.3995 42 1 -0.6816 -8.6343 0.3673 43 1 -1.3214 -8.5906 2.0284 44 1 0.7129 -9.7111 2.8615 45 1 -0.5629 -11.0665 0.4436 46 1 0.4227 -11.9038 1.6666 47 1 -2.5739 -14.0194 1.3350 48 1 1.5429 -9.7657 -0.0767 49 1 2.4334 -10.5003 1.2791 50 1 3.3830 -8.2860 0.6667 51 1 2.7107 -8.2701 2.3147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567790225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:18 Heat of formation + Delta-G solvation = -28.092326 kcal Electronic energy + Delta-G solvation = -27400.004863 eV Core-core repulsion = 23684.048012 eV Total energy + Delta-G solvation = -3715.956852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03448 -39.16918 -38.51000 -35.24374 -34.87306 -32.92909 -32.65819 -31.23613 -30.36590 -29.67053 -27.64010 -27.09466 -24.67075 -23.46884 -22.84992 -22.16333 -21.49154 -20.67031 -20.29169 -18.92755 -18.06285 -17.43680 -16.28322 -16.20648 -15.98914 -15.58289 -14.99814 -14.85580 -14.46422 -14.43550 -14.24275 -14.03331 -13.78489 -13.54209 -13.46616 -13.12881 -13.03651 -12.80166 -12.46847 -12.24725 -12.11763 -11.87259 -11.78717 -11.56042 -11.47732 -11.30164 -11.03945 -10.82801 -10.78479 -10.64616 -10.56817 -10.25851 -10.00264 -9.93512 -9.52248 -9.04196 -9.03857 -8.86524 -8.34203 -8.32073 -8.12728 -5.96766 -3.98150 0.94311 1.09836 2.29534 2.64781 3.32257 3.38931 3.41764 3.50742 3.99766 4.41159 4.47684 4.49994 4.53034 4.74961 4.81284 4.89385 4.93215 5.12053 5.17194 5.19154 5.30348 5.35791 5.38074 5.39888 5.44395 5.52990 5.53963 5.68852 5.77163 5.79133 5.85345 5.89576 5.96454 5.99499 6.08497 6.14508 6.19488 6.24935 6.28122 6.45578 6.57819 6.67700 6.74890 6.97929 7.00962 7.10666 7.20227 7.30458 7.36618 7.71827 7.75934 7.88441 8.04237 8.47322 9.08477 9.65195 11.14525 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.001860 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.299835 B =15052.453136 C =15963.410925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.129 4.129 7 C 0.151 3.849 8 N -0.673 5.673 9 C 0.516 3.484 10 O -0.518 6.518 11 C -0.138 4.138 12 C 0.071 3.929 13 N -0.538 5.538 14 C 0.051 3.949 15 C -0.099 4.099 16 C -0.082 4.082 17 C 0.028 3.972 18 C -0.514 4.514 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.112 4.112 27 C 0.061 3.939 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.014 0.986 47 H 0.259 0.741 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 28.188 -5.247 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.158 4.158 5 C -0.124 4.124 6 C -0.149 4.149 7 C 0.056 3.944 8 N -0.318 5.318 9 C 0.304 3.696 10 O -0.393 6.393 11 C -0.178 4.178 12 C -0.058 4.058 13 N -0.263 5.263 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.101 4.101 17 C -0.009 4.009 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.150 4.150 27 C -0.067 4.067 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.964 27.883 -5.409 29.784 hybrid contribution -1.132 -0.010 1.269 1.700 sum 7.832 27.873 -4.140 29.247 Atomic orbital electron populations 1.20737 0.90960 1.03128 1.02407 1.19642 0.96064 0.91843 1.04796 1.20825 0.94200 0.96794 1.00177 1.21111 0.94233 0.98135 1.02271 1.21074 1.00001 0.91977 0.99316 1.21434 0.92488 0.99921 1.01049 1.17669 0.91588 0.84680 1.00478 1.43673 1.19135 1.07218 1.61739 1.21046 0.86148 0.85737 0.76629 1.90677 1.21102 1.86255 1.41220 1.21706 1.00576 0.90457 1.05038 1.21742 0.96642 0.88051 0.99325 1.61932 1.06250 1.01881 1.56205 1.22287 0.91168 0.99673 0.94513 1.21542 0.98196 0.91930 1.02034 1.21240 0.93528 0.97533 0.97787 1.19116 0.94508 0.90388 0.96911 1.21254 1.09395 1.04720 1.19869 0.92744 1.25022 0.97906 0.95994 0.95610 1.69968 1.38467 1.09560 1.35530 0.86654 0.83444 0.77155 0.81089 1.20746 1.21322 1.19993 1.21698 0.97578 0.94309 1.01372 1.22090 0.94957 0.91522 0.98098 0.91012 0.91760 0.90989 0.85818 0.86091 0.85814 0.83675 0.75151 0.88304 0.87371 0.90249 0.94293 0.95367 0.91635 0.91832 0.90934 0.93071 0.96502 0.96755 0.93118 0.91569 0.92087 0.91526 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.44 36.00 0.34 -0.30 16 2 C -0.12 -0.98 5.90 -104.43 -0.62 -1.60 16 3 C -0.10 -0.77 9.70 -39.61 -0.38 -1.15 16 4 C -0.14 -1.08 10.04 -39.55 -0.40 -1.47 16 5 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 6 C -0.13 -1.38 8.72 -39.39 -0.34 -1.72 16 7 C 0.15 1.47 6.41 -83.69 -0.54 0.93 16 8 N -0.67 -5.63 4.97 -9.86 -0.05 -5.68 16 9 C 0.52 5.34 7.64 -10.99 -0.08 5.26 16 10 O -0.52 -7.08 13.14 5.56 0.07 -7.01 16 11 C -0.14 -1.27 5.63 -27.88 -0.16 -1.43 16 12 C 0.07 0.85 4.25 -3.82 -0.02 0.83 16 13 N -0.54 -7.50 4.66 -234.66 -1.09 -8.59 16 14 C 0.05 0.75 5.29 -3.83 -0.02 0.73 16 15 C -0.10 -1.80 5.15 -26.65 -0.14 -1.94 16 16 C -0.08 -1.66 2.20 -90.50 -0.20 -1.86 16 17 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 18 C -0.51 -14.24 8.45 -34.44 -0.29 -14.53 16 19 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.11 -1.92 5.38 -26.65 -0.14 -2.07 16 27 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 7.00 -51.93 -0.36 -0.03 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.15 1.75 5.79 -52.48 -0.30 1.44 16 35 H 0.41 2.25 7.42 -40.82 -0.30 1.95 16 36 H 0.10 0.80 6.43 -51.93 -0.33 0.47 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.81 6.21 -51.93 -0.32 0.49 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.40 7.06 -51.93 -0.37 1.03 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 51 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -32.37 399.54 -11.62 -44.00 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.66 Total: -0.44 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.63 Total: -18.72 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.41 Total: -40.37 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.07 Total: -7.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.37 -11.62 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567790225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.903 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds