Wall clock time and date at job start Tue Mar 31 2020 15:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03702 * 2 1 4 4 C 1.38262 * 120.07009 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14401 * 359.95827 * 4 3 2 6 6 C 1.38089 * 120.06808 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03531 * 180.23388 * 2 1 3 8 8 N 1.39926 * 120.07134 * 359.97438 * 7 2 1 9 9 C 1.34779 * 119.99825 * 205.07067 * 8 7 2 10 10 O 1.21283 * 120.00197 * 5.52293 * 9 8 7 11 11 C 1.50697 * 119.99592 * 185.52083 * 9 8 7 12 12 C 1.53000 * 109.47033 * 179.97438 * 11 9 8 13 13 N 1.46900 * 109.47208 * 180.02562 * 12 11 9 14 14 C 1.46845 * 111.00109 * 294.20969 * 13 12 11 15 15 C 1.53043 * 109.52436 * 174.15886 * 14 13 12 16 16 C 1.53113 * 109.27663 * 59.18256 * 15 14 13 17 17 C 1.52996 * 109.57722 * 182.40587 * 16 15 14 18 18 C 1.50696 * 109.47633 * 294.71927 * 17 16 15 19 19 H 1.08000 * 119.99732 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00532 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99457 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47313 * 90.00027 * 22 20 18 24 24 H 1.48498 * 109.46962 * 210.00152 * 22 20 18 25 25 H 1.48503 * 109.47160 * 329.99858 * 22 20 18 26 26 C 1.53121 * 109.16125 * 302.34612 * 16 15 14 27 27 C 1.46846 * 110.99839 * 170.00460 * 13 12 11 28 28 H 1.08993 * 109.47033 * 90.00013 * 1 2 3 29 29 H 1.09003 * 109.47126 * 209.99492 * 1 2 3 30 30 H 1.08994 * 109.47014 * 329.99607 * 1 2 3 31 31 H 1.07999 * 119.95988 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.92574 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.96760 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.03662 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00189 * 25.07000 * 8 7 2 36 36 H 1.08997 * 109.47544 * 300.00419 * 11 9 8 37 37 H 1.08999 * 109.47178 * 60.00197 * 11 9 8 38 38 H 1.08997 * 109.47467 * 300.00674 * 12 11 9 39 39 H 1.09007 * 109.46617 * 60.00430 * 12 11 9 40 40 H 1.08997 * 109.46726 * 294.17871 * 14 13 12 41 41 H 1.09004 * 109.46099 * 54.14819 * 14 13 12 42 42 H 1.08995 * 109.50308 * 299.24411 * 15 14 13 43 43 H 1.08996 * 109.50071 * 179.12562 * 15 14 13 44 44 H 1.09005 * 109.52531 * 62.24864 * 16 15 14 45 45 H 1.09003 * 109.46683 * 54.71464 * 17 16 15 46 46 H 1.08998 * 109.47287 * 174.71337 * 17 16 15 47 47 H 0.96999 * 119.99233 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.50274 * 297.71105 * 26 16 15 49 49 H 1.09005 * 109.50164 * 177.59492 * 26 16 15 50 50 H 1.08999 * 109.46294 * 305.85048 * 27 13 12 51 51 H 1.09003 * 109.46647 * 65.83841 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0002 6 6 3.5909 -1.1978 0.0012 7 6 2.2020 -1.2021 -0.0049 8 7 1.5046 -2.4152 -0.0093 9 6 2.0856 -3.5282 0.4808 10 8 3.1717 -3.4599 1.0162 11 6 1.3856 -4.8576 0.3634 12 6 2.2537 -5.9485 0.9936 13 7 1.5716 -7.2444 0.8787 14 6 0.3408 -7.2641 1.6793 15 6 -0.4157 -8.5695 1.4223 16 6 0.4785 -9.7543 1.7979 17 6 -0.2487 -11.0641 1.4874 18 6 -1.4589 -11.1898 2.3765 19 1 -1.6863 -10.4133 3.0919 20 6 -2.2757 -12.2961 2.2768 21 7 -1.9989 -13.2413 1.4054 22 14 -3.7754 -12.4522 3.3796 23 1 -4.9483 -11.8343 2.7105 24 1 -4.0525 -13.8880 3.6380 25 1 -3.5176 -11.7583 4.6670 26 6 1.7743 -9.6833 0.9852 27 6 2.4673 -8.3456 1.2549 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6584 2.1311 0.0004 32 1 4.1193 2.1329 -0.0010 33 1 5.3562 0.0050 -0.0002 34 1 4.1344 -2.1312 0.0010 35 1 0.6031 -2.4551 -0.3651 36 1 0.4275 -4.8107 0.8812 37 1 1.2190 -5.0889 -0.6886 38 1 3.2115 -5.9952 0.4756 39 1 2.4206 -5.7173 2.0458 40 1 0.5942 -7.1935 2.7371 41 1 -0.2881 -6.4189 1.3995 42 1 -0.6816 -8.6343 0.3673 43 1 -1.3214 -8.5906 2.0284 44 1 0.7129 -9.7111 2.8615 45 1 -0.5629 -11.0665 0.4436 46 1 0.4227 -11.9038 1.6666 47 1 -2.5739 -14.0194 1.3350 48 1 1.5429 -9.7657 -0.0767 49 1 2.4334 -10.5003 1.2791 50 1 3.3830 -8.2860 0.6667 51 1 2.7107 -8.2701 2.3147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567790225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:17 Heat of formation + Delta-G solvation = -46.650054 kcal Electronic energy + Delta-G solvation = -27400.809587 eV Core-core repulsion = 23684.048012 eV Total energy + Delta-G solvation = -3716.761575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76187 -40.19292 -39.47026 -36.43632 -35.90760 -34.50799 -33.49425 -32.43853 -31.62822 -30.57382 -29.15529 -27.71705 -26.13919 -24.62268 -24.09683 -23.22402 -22.28015 -21.93490 -21.14295 -20.43554 -18.75386 -18.41318 -18.19305 -17.02724 -16.73672 -16.63212 -16.41993 -15.91009 -15.71229 -15.29055 -15.24698 -14.96873 -14.72564 -14.70029 -14.62215 -14.21446 -13.98439 -13.91691 -13.60435 -13.26464 -13.23752 -13.01845 -12.95325 -12.78437 -12.53931 -12.49957 -12.37483 -12.15859 -12.13511 -12.01457 -11.94247 -11.62429 -11.52642 -11.22486 -10.83724 -10.80503 -10.68347 -10.50073 -9.66358 -9.27082 -8.99482 -8.15674 -6.25145 0.29527 0.45558 1.40631 1.41731 1.52420 1.55406 1.94969 2.42929 2.87459 2.97197 3.17463 3.67414 3.84855 3.94676 3.96607 4.03795 4.06736 4.15720 4.21301 4.25192 4.40853 4.41161 4.52656 4.55130 4.59148 4.60181 4.69372 4.75836 4.80659 4.81932 4.85195 4.88510 4.97953 5.00117 5.04112 5.12568 5.19413 5.27895 5.35317 5.39916 5.42751 5.45144 5.49339 5.58649 5.60188 5.64404 5.83045 5.91310 6.12026 6.14290 6.17674 6.32261 6.37953 6.91079 7.05532 7.43095 8.96139 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.001860 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.299835 B =15052.453136 C =15963.410925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C -0.106 4.106 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.154 4.154 7 C 0.130 3.870 8 N -0.660 5.660 9 C 0.516 3.484 10 O -0.557 6.557 11 C -0.128 4.128 12 C 0.075 3.925 13 N -0.539 5.539 14 C 0.059 3.941 15 C -0.094 4.094 16 C -0.077 4.077 17 C 0.033 3.967 18 C -0.528 4.528 19 H 0.060 0.940 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.961 3.039 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.106 4.106 27 C 0.066 3.934 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.426 0.574 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.044 0.956 45 H -0.010 1.010 46 H -0.016 1.016 47 H 0.261 0.739 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 31.053 -5.019 32.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.126 4.126 3 C -0.125 4.125 4 C -0.159 4.159 5 C -0.137 4.137 6 C -0.174 4.174 7 C 0.035 3.965 8 N -0.305 5.305 9 C 0.306 3.694 10 O -0.435 6.435 11 C -0.168 4.168 12 C -0.053 4.053 13 N -0.264 5.264 14 C -0.068 4.068 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.079 0.921 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.144 4.144 27 C -0.062 4.062 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.266 0.734 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.009 0.991 46 H 0.002 0.998 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.104 0.896 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.656 30.780 -5.196 32.140 hybrid contribution -0.688 -0.876 1.159 1.608 sum 6.969 29.904 -4.036 30.969 Atomic orbital electron populations 1.20808 0.88964 1.03870 1.03532 1.19990 0.97586 0.91338 1.03652 1.21225 0.94343 0.97711 0.99177 1.21435 0.94732 0.98511 1.01179 1.21280 1.00758 0.92063 0.99589 1.21426 0.93353 0.99761 1.02889 1.17856 0.91503 0.85653 1.01504 1.43523 1.19564 1.06467 1.60983 1.21217 0.85626 0.86468 0.76116 1.90675 1.22836 1.86807 1.43188 1.21633 1.00379 0.88755 1.05998 1.21700 0.96997 0.87591 0.98987 1.61917 1.06068 1.02574 1.55875 1.22186 0.91541 0.98468 0.94611 1.21417 0.97675 0.93000 1.01053 1.21108 0.94930 0.95729 0.97828 1.19011 0.94043 0.92311 0.95015 1.21646 1.10039 1.04884 1.20055 0.92141 1.25962 1.01298 0.95647 0.97127 1.70110 1.39923 1.10231 1.37320 0.85510 0.79430 0.77185 0.79301 1.19678 1.21114 1.18888 1.21593 0.96260 0.96271 1.00248 1.22010 0.95420 0.90246 0.98495 0.89588 0.91424 0.89883 0.83269 0.83790 0.84858 0.85826 0.73449 0.86508 0.85725 0.90521 0.95334 0.95561 0.88531 0.92674 0.92332 0.93798 0.99134 0.99799 0.93007 0.92245 0.92237 0.89610 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.44 71.24 0.67 -0.26 16 2 C -0.12 -1.76 5.90 -19.74 -0.12 -1.88 16 3 C -0.11 -1.36 9.70 22.25 0.22 -1.14 16 4 C -0.14 -1.94 10.04 22.29 0.22 -1.71 16 5 C -0.12 -2.08 10.04 22.25 0.22 -1.86 16 6 C -0.15 -3.36 8.72 22.39 0.20 -3.16 16 7 C 0.13 2.42 6.41 38.15 0.24 2.66 16 8 N -0.66 -10.12 4.97 -303.50 -1.51 -11.63 16 9 C 0.52 10.14 7.64 87.66 0.67 10.81 16 10 O -0.56 -15.38 13.14 -3.04 -0.04 -15.42 16 11 C -0.13 -2.06 5.63 29.85 0.17 -1.89 16 12 C 0.08 1.68 4.25 86.30 0.37 2.04 16 13 N -0.54 -14.06 4.66 -896.33 -4.17 -18.24 16 14 C 0.06 1.62 5.29 86.33 0.46 2.07 16 15 C -0.09 -3.35 5.15 30.65 0.16 -3.20 16 16 C -0.08 -3.17 2.20 -10.72 -0.02 -3.20 16 17 C 0.03 1.76 4.45 29.85 0.13 1.89 16 18 C -0.53 -29.80 8.45 25.60 0.22 -29.59 16 19 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 20 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 21 N -0.94 -57.35 13.29 21.45 0.28 -57.07 16 22 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.11 -3.67 5.38 30.65 0.16 -3.50 16 27 C 0.07 1.86 5.46 86.33 0.47 2.34 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.51 7.00 -2.39 -0.02 0.49 16 30 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.12 3.18 5.79 -2.91 -0.02 3.16 16 35 H 0.43 3.67 7.42 -92.71 -0.69 2.99 16 36 H 0.12 1.48 6.43 -2.39 -0.02 1.47 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.77 7.94 -2.39 -0.02 1.75 16 39 H 0.03 0.71 8.08 -2.38 -0.02 0.69 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 2.06 6.21 -2.38 -0.01 2.04 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.24 7.06 -2.39 -0.02 2.22 16 44 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 45 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 46 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 50 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 51 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.39 399.54 1.71 -70.68 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.22 Total: 14.61 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 4.90 Total: -29.28 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -5.40 Total: -86.93 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.04 Total: -15.42 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.39 1.71 -70.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567790225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.025 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds