Wall clock time and date at job start Tue Mar 31 2020 15:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 119.46193 * 2 1 4 4 C 1.38362 * 119.30028 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28978 * 0.02562 * 4 3 2 6 6 C 1.47837 * 120.55715 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00082 * 125.11786 * 6 5 4 8 8 N 1.34778 * 120.00105 * 305.11387 * 6 5 4 9 9 C 1.46931 * 120.62876 * 3.77899 * 8 6 5 10 10 C 1.52753 * 109.00750 * 233.58552 * 9 8 6 11 11 C 1.53046 * 109.38414 * 305.58872 * 10 9 8 12 12 C 1.53003 * 109.45981 * 181.26375 * 11 10 9 13 13 C 1.50698 * 109.47283 * 64.93320 * 12 11 10 14 14 H 1.08002 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00127 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99822 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47330 * 60.00228 * 17 15 13 19 19 H 1.48502 * 109.46857 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47290 * 299.99653 * 17 15 13 21 21 C 1.53035 * 109.53746 * 61.24308 * 11 10 9 22 22 C 1.46923 * 120.62957 * 184.06300 * 8 6 5 23 23 C 1.39517 * 118.88187 * 359.97438 * 5 4 3 24 24 C 1.50699 * 119.71729 * 180.02562 * 23 5 4 25 25 C 1.53000 * 109.47167 * 124.56627 * 24 23 5 26 26 C 1.53006 * 109.47185 * 244.56947 * 24 23 5 27 27 N 1.31696 * 120.56560 * 359.73056 * 23 5 4 28 28 H 1.09002 * 109.47214 * 89.99436 * 1 2 3 29 29 H 1.08997 * 109.47377 * 209.99837 * 1 2 3 30 30 H 1.09007 * 109.46806 * 330.00055 * 1 2 3 31 31 H 1.07998 * 120.35170 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.85132 * 179.97438 * 4 3 2 33 33 H 1.08992 * 109.58457 * 353.42390 * 9 8 6 34 34 H 1.09004 * 109.58189 * 113.84621 * 9 8 6 35 35 H 1.08999 * 109.56153 * 185.55769 * 10 9 8 36 36 H 1.08993 * 109.36331 * 65.49823 * 10 9 8 37 37 H 1.08998 * 109.46023 * 301.21850 * 11 10 9 38 38 H 1.08997 * 109.46759 * 184.93268 * 12 11 10 39 39 H 1.08997 * 109.46786 * 304.93157 * 12 11 10 40 40 H 0.97006 * 119.99888 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.50192 * 178.68708 * 21 11 10 42 42 H 1.08997 * 109.52850 * 58.59832 * 21 11 10 43 43 H 1.08999 * 109.58528 * 246.15511 * 22 8 6 44 44 H 1.08995 * 109.59152 * 6.43437 * 22 8 6 45 45 H 1.09000 * 109.46986 * 4.56844 * 24 23 5 46 46 H 1.09000 * 109.46991 * 60.00220 * 25 24 23 47 47 H 1.09001 * 109.46659 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.47093 * 300.00054 * 25 24 23 49 49 H 1.08999 * 109.46594 * 300.00047 * 26 24 23 50 50 H 1.08998 * 109.47217 * 59.99589 * 26 24 23 51 51 H 1.08996 * 109.46987 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0342 -0.0016 6 6 5.7082 -0.0968 -0.0017 7 8 6.2898 -0.7284 0.8588 8 7 6.4100 0.5462 -0.9559 9 6 5.7265 1.3807 -1.9535 10 6 6.1444 0.9280 -3.3513 11 6 7.6712 0.9462 -3.4558 12 6 8.0907 0.5232 -4.8651 13 6 7.6092 1.5466 -5.8610 14 1 7.0585 2.4119 -5.5226 15 6 7.8706 1.3777 -7.2041 16 7 8.5407 0.3236 -7.6161 17 14 7.2730 2.6458 -8.4387 18 1 7.8714 3.9670 -8.1202 19 1 7.6803 2.2353 -9.8065 20 1 5.7928 2.7435 -8.3709 21 6 8.2658 -0.0253 -2.4337 22 6 7.8724 0.4211 -1.0220 23 6 3.4715 -1.2044 -0.0016 24 6 4.1626 -2.5436 -0.0021 25 6 3.6696 -3.3724 1.1857 26 6 3.8454 -3.2806 -1.3049 27 7 2.1558 -1.1487 0.0048 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6444 2.1381 -0.0004 32 1 4.1275 2.1263 -0.0010 33 1 4.6476 1.2723 -1.8431 34 1 6.0074 2.4243 -1.8112 35 1 5.7208 1.6026 -4.0953 36 1 5.7798 -0.0840 -3.5274 37 1 8.0369 1.9532 -3.2552 38 1 9.1772 0.4514 -4.9145 39 1 7.6514 -0.4464 -5.0992 40 1 8.7243 0.2046 -8.5612 41 1 9.3520 -0.0292 -2.5245 42 1 7.8816 -1.0285 -2.6182 43 1 8.3319 1.3848 -0.8022 44 1 8.2092 -0.3184 -0.2955 45 1 5.2395 -2.3968 0.0793 46 1 2.5926 -3.5192 1.1043 47 1 4.1691 -4.3412 1.1850 48 1 3.8956 -2.8473 2.1138 49 1 2.7684 -3.4274 -1.3863 50 1 4.1966 -2.6902 -2.1512 51 1 4.3448 -4.2494 -1.3051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570096794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:46 Heat of formation + Delta-G solvation = -29.732201 kcal Electronic energy + Delta-G solvation = -29298.098700 eV Core-core repulsion = 25582.070738 eV Total energy + Delta-G solvation = -3716.027962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.16935 -39.49181 -37.42851 -35.72404 -34.19970 -33.28944 -32.04074 -31.56264 -30.77128 -28.59177 -27.75084 -27.12736 -24.92444 -24.24546 -23.05191 -22.85592 -21.65860 -20.57053 -20.06661 -18.95787 -17.33444 -16.83852 -16.34915 -16.04719 -15.85026 -15.02889 -14.80374 -14.61532 -14.51364 -14.26635 -13.86892 -13.75097 -13.46914 -13.36462 -13.26287 -12.95043 -12.81808 -12.72133 -12.49827 -12.40091 -12.24424 -12.03104 -11.86002 -11.41918 -11.22558 -11.16958 -11.05679 -10.87766 -10.82053 -10.73146 -10.49604 -10.20449 -10.10263 -9.92518 -9.66953 -9.46540 -9.29200 -9.03816 -8.94882 -8.43226 -8.37627 -6.02910 -4.05275 0.64955 1.01961 2.60722 3.02805 3.29290 3.34877 3.35970 3.52271 3.92218 4.32239 4.42128 4.44296 4.48798 4.80742 5.00613 5.06514 5.12183 5.15419 5.16015 5.30022 5.31637 5.32957 5.35241 5.42279 5.45838 5.60112 5.62772 5.66477 5.67543 5.71788 5.74642 5.80261 5.85647 5.93169 5.97793 6.00567 6.02790 6.23885 6.26908 6.32019 6.34005 6.45303 6.49392 6.61396 6.90101 6.94127 7.06164 7.43271 7.62880 7.77560 7.78744 7.96346 8.13019 8.38396 9.00880 9.58640 11.08274 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003258 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.822405 B = 8592.919553 C = 9273.558635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.179 4.179 6 C 0.566 3.434 7 O -0.538 6.538 8 N -0.595 5.595 9 C 0.097 3.903 10 C -0.118 4.118 11 C -0.080 4.080 12 C 0.028 3.972 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.130 4.130 22 C 0.112 3.888 23 C 0.192 3.808 24 C -0.059 4.059 25 C -0.133 4.133 26 C -0.140 4.140 27 N -0.479 5.479 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 -0.378 16.776 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.203 4.203 4 C -0.066 4.066 5 C -0.185 4.185 6 C 0.353 3.647 7 O -0.417 6.417 8 N -0.327 5.327 9 C -0.026 4.026 10 C -0.156 4.156 11 C -0.099 4.099 12 C -0.009 4.009 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.168 4.168 22 C -0.010 4.010 23 C 0.053 3.947 24 C -0.078 4.078 25 C -0.190 4.190 26 C -0.198 4.198 27 N -0.188 5.188 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.179 -1.558 17.066 21.618 hybrid contribution 0.215 1.715 -0.986 1.990 sum -12.964 0.157 16.081 20.656 Atomic orbital electron populations 1.20756 0.88565 1.03556 1.03374 1.21459 0.97166 0.88216 0.92451 1.21859 0.94359 0.99536 1.04584 1.21707 0.94594 0.97166 0.93146 1.20738 0.94679 0.95080 1.07960 1.18065 0.86241 0.78884 0.81487 1.90754 1.70903 1.42839 1.37199 1.48121 1.07963 1.47469 1.29130 1.22057 0.96997 0.94111 0.89386 1.21819 0.97888 1.02138 0.93801 1.21195 0.93448 0.97826 0.97430 1.19111 0.96523 0.96629 0.88592 1.21186 1.35338 1.07517 0.91583 0.92694 1.25015 0.95291 0.95475 0.98604 1.69954 1.40221 1.27831 1.15399 0.86713 0.79171 0.81897 0.80542 1.20289 1.21332 1.20287 1.22034 1.01098 1.00326 0.93304 1.21729 0.78411 1.01884 0.98929 1.21233 0.88653 0.94345 0.90437 1.20353 1.00495 0.89827 0.97077 1.21682 1.01621 0.99027 0.96680 1.21787 1.02291 0.99977 0.95738 1.67325 1.08819 1.28905 1.13764 0.90034 0.90317 0.90577 0.84242 0.84202 0.90285 0.91282 0.89624 0.92323 0.92292 0.96559 0.96643 0.92958 0.90924 0.91999 0.91563 0.89485 0.88295 0.91841 0.92228 0.92864 0.91840 0.92655 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.16 36.00 0.37 -0.38 16 2 C 0.15 1.53 6.78 -82.51 -0.56 0.97 16 3 C -0.18 -1.75 9.72 -39.49 -0.38 -2.13 16 4 C -0.04 -0.44 7.60 -38.87 -0.30 -0.74 16 5 C -0.18 -2.45 4.85 -104.82 -0.51 -2.96 16 6 C 0.57 8.66 6.34 -12.33 -0.08 8.59 16 7 O -0.54 -9.52 14.81 5.32 0.08 -9.44 16 8 N -0.59 -8.67 2.98 -174.15 -0.52 -9.18 16 9 C 0.10 1.32 5.58 -3.93 -0.02 1.30 16 10 C -0.12 -2.02 5.17 -26.83 -0.14 -2.16 16 11 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 12 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 13 C -0.52 -13.83 8.39 -34.44 -0.29 -14.12 16 14 H 0.05 1.40 7.05 -52.49 -0.37 1.03 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.13 -2.12 5.36 -26.61 -0.14 -2.26 16 22 C 0.11 1.63 6.43 -3.71 -0.02 1.61 16 23 C 0.19 2.63 5.50 -82.17 -0.45 2.18 16 24 C -0.06 -0.77 2.95 -91.77 -0.27 -1.04 16 25 C -0.13 -1.54 9.05 37.16 0.34 -1.20 16 26 C -0.14 -1.72 9.13 37.16 0.34 -1.38 16 27 N -0.48 -6.11 9.71 -5.42 -0.05 -6.17 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.38 8.07 -51.93 -0.42 -0.03 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.14 1.28 7.50 -52.49 -0.39 0.88 16 33 H 0.08 0.99 4.80 -51.93 -0.25 0.74 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 45 H 0.10 1.49 5.38 -51.93 -0.28 1.21 16 46 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 50 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -31.36 399.86 -10.03 -41.39 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.75 Total: 0.34 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.53 Total: -13.37 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.17 Total: -40.96 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.36 -10.03 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570096794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.662 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds