Wall clock time and date at job start Tue Mar 31 2020 15:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 119.46193 * 2 1 4 4 C 1.38362 * 119.30028 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28978 * 0.02562 * 4 3 2 6 6 C 1.47837 * 120.55715 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00082 * 125.11786 * 6 5 4 8 8 N 1.34778 * 120.00105 * 305.11387 * 6 5 4 9 9 C 1.46931 * 120.62876 * 3.77899 * 8 6 5 10 10 C 1.52753 * 109.00750 * 233.58552 * 9 8 6 11 11 C 1.53046 * 109.38414 * 305.58872 * 10 9 8 12 12 C 1.53003 * 109.45981 * 181.26375 * 11 10 9 13 13 C 1.50698 * 109.47283 * 64.93320 * 12 11 10 14 14 H 1.08002 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00127 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99822 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47330 * 60.00228 * 17 15 13 19 19 H 1.48502 * 109.46857 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47290 * 299.99653 * 17 15 13 21 21 C 1.53035 * 109.53746 * 61.24308 * 11 10 9 22 22 C 1.46923 * 120.62957 * 184.06300 * 8 6 5 23 23 C 1.39517 * 118.88187 * 359.97438 * 5 4 3 24 24 C 1.50699 * 119.71729 * 180.02562 * 23 5 4 25 25 C 1.53000 * 109.47167 * 124.56627 * 24 23 5 26 26 C 1.53006 * 109.47185 * 244.56947 * 24 23 5 27 27 N 1.31696 * 120.56560 * 359.73056 * 23 5 4 28 28 H 1.09002 * 109.47214 * 89.99436 * 1 2 3 29 29 H 1.08997 * 109.47377 * 209.99837 * 1 2 3 30 30 H 1.09007 * 109.46806 * 330.00055 * 1 2 3 31 31 H 1.07998 * 120.35170 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.85132 * 179.97438 * 4 3 2 33 33 H 1.08992 * 109.58457 * 353.42390 * 9 8 6 34 34 H 1.09004 * 109.58189 * 113.84621 * 9 8 6 35 35 H 1.08999 * 109.56153 * 185.55769 * 10 9 8 36 36 H 1.08993 * 109.36331 * 65.49823 * 10 9 8 37 37 H 1.08998 * 109.46023 * 301.21850 * 11 10 9 38 38 H 1.08997 * 109.46759 * 184.93268 * 12 11 10 39 39 H 1.08997 * 109.46786 * 304.93157 * 12 11 10 40 40 H 0.97006 * 119.99888 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.50192 * 178.68708 * 21 11 10 42 42 H 1.08997 * 109.52850 * 58.59832 * 21 11 10 43 43 H 1.08999 * 109.58528 * 246.15511 * 22 8 6 44 44 H 1.08995 * 109.59152 * 6.43437 * 22 8 6 45 45 H 1.09000 * 109.46986 * 4.56844 * 24 23 5 46 46 H 1.09000 * 109.46991 * 60.00220 * 25 24 23 47 47 H 1.09001 * 109.46659 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.47093 * 300.00054 * 25 24 23 49 49 H 1.08999 * 109.46594 * 300.00047 * 26 24 23 50 50 H 1.08998 * 109.47217 * 59.99589 * 26 24 23 51 51 H 1.08996 * 109.46987 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0342 -0.0016 6 6 5.7082 -0.0968 -0.0017 7 8 6.2898 -0.7284 0.8588 8 7 6.4100 0.5462 -0.9559 9 6 5.7265 1.3807 -1.9535 10 6 6.1444 0.9280 -3.3513 11 6 7.6712 0.9462 -3.4558 12 6 8.0907 0.5232 -4.8651 13 6 7.6092 1.5466 -5.8610 14 1 7.0585 2.4119 -5.5226 15 6 7.8706 1.3777 -7.2041 16 7 8.5407 0.3236 -7.6161 17 14 7.2730 2.6458 -8.4387 18 1 7.8714 3.9670 -8.1202 19 1 7.6803 2.2353 -9.8065 20 1 5.7928 2.7435 -8.3709 21 6 8.2658 -0.0253 -2.4337 22 6 7.8724 0.4211 -1.0220 23 6 3.4715 -1.2044 -0.0016 24 6 4.1626 -2.5436 -0.0021 25 6 3.6696 -3.3724 1.1857 26 6 3.8454 -3.2806 -1.3049 27 7 2.1558 -1.1487 0.0048 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6444 2.1381 -0.0004 32 1 4.1275 2.1263 -0.0010 33 1 4.6476 1.2723 -1.8431 34 1 6.0074 2.4243 -1.8112 35 1 5.7208 1.6026 -4.0953 36 1 5.7798 -0.0840 -3.5274 37 1 8.0369 1.9532 -3.2552 38 1 9.1772 0.4514 -4.9145 39 1 7.6514 -0.4464 -5.0992 40 1 8.7243 0.2046 -8.5612 41 1 9.3520 -0.0292 -2.5245 42 1 7.8816 -1.0285 -2.6182 43 1 8.3319 1.3848 -0.8022 44 1 8.2092 -0.3184 -0.2955 45 1 5.2395 -2.3968 0.0793 46 1 2.5926 -3.5192 1.1043 47 1 4.1691 -4.3412 1.1850 48 1 3.8956 -2.8473 2.1138 49 1 2.7684 -3.4274 -1.3863 50 1 4.1966 -2.6902 -2.1512 51 1 4.3448 -4.2494 -1.3051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570096794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:45 Heat of formation + Delta-G solvation = -46.139750 kcal Electronic energy + Delta-G solvation = -29298.810185 eV Core-core repulsion = 25582.070738 eV Total energy + Delta-G solvation = -3716.739447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15440 -40.58657 -38.76330 -36.68852 -35.74584 -34.51120 -33.66154 -32.38834 -32.00860 -30.00669 -28.89685 -28.10167 -26.47061 -25.26739 -24.27855 -24.05734 -23.00049 -21.64932 -21.31588 -20.24693 -18.48922 -18.36633 -17.81728 -17.17629 -16.76095 -16.53728 -16.11066 -15.68811 -15.51496 -15.30218 -15.22360 -14.95876 -14.71034 -14.55897 -14.23845 -14.18113 -14.10467 -13.94815 -13.48188 -13.44108 -13.22385 -13.01491 -12.98834 -12.91523 -12.77019 -12.50146 -12.35637 -12.35237 -12.19376 -12.13717 -11.87999 -11.79097 -11.40110 -11.18725 -11.12253 -10.87610 -10.68864 -10.50743 -10.40238 -9.86287 -9.65124 -8.15849 -6.25643 -0.23543 0.18755 1.41962 1.44155 1.47070 1.51616 1.92507 2.43138 2.64714 3.08485 3.17979 3.32052 3.57532 3.72649 3.85950 3.97963 4.00070 4.07739 4.13726 4.15361 4.16797 4.27640 4.36180 4.37748 4.49937 4.63216 4.65498 4.72948 4.73861 4.76638 4.80187 4.82788 4.85534 4.89084 4.92856 4.98933 5.04843 5.06472 5.10842 5.17913 5.25283 5.28626 5.30584 5.35496 5.36854 5.50699 5.56690 5.66959 5.80411 5.89198 6.26237 6.30204 6.91114 6.92125 6.97779 7.43290 8.95982 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003258 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.822405 B = 8592.919553 C = 9273.558635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.136 3.864 3 C -0.173 4.173 4 C -0.041 4.041 5 C -0.204 4.204 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.596 5.596 9 C 0.107 3.893 10 C -0.112 4.112 11 C -0.072 4.072 12 C 0.033 3.967 13 C -0.527 4.527 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.290 1.290 20 H -0.265 1.265 21 C -0.122 4.122 22 C 0.119 3.881 23 C 0.174 3.826 24 C -0.061 4.061 25 C -0.124 4.124 26 C -0.133 4.133 27 N -0.496 5.496 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.068 0.932 38 H -0.013 1.013 39 H -0.018 1.018 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.067 0.933 50 H 0.037 0.963 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 2.294 17.642 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.193 4.193 4 C -0.067 4.067 5 C -0.209 4.209 6 C 0.356 3.644 7 O -0.450 6.450 8 N -0.327 5.327 9 C -0.014 4.014 10 C -0.151 4.151 11 C -0.090 4.090 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.087 0.913 15 C -0.200 4.200 16 N -0.579 5.579 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.160 4.160 22 C -0.003 4.003 23 C 0.036 3.964 24 C -0.080 4.080 25 C -0.182 4.182 26 C -0.191 4.191 27 N -0.206 5.206 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.196 0.804 32 H 0.179 0.821 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.000 1.000 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.056 0.944 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.577 1.129 17.942 23.787 hybrid contribution 0.925 0.844 -1.260 1.776 sum -14.653 1.973 16.682 22.290 Atomic orbital electron populations 1.20863 0.86099 1.04767 1.04241 1.22154 0.98861 0.88075 0.91110 1.22278 0.93827 1.00682 1.02483 1.22010 0.95497 0.96791 0.92393 1.20702 0.93509 0.96413 1.10291 1.18358 0.87086 0.77987 0.80984 1.90727 1.71761 1.43990 1.38521 1.48172 1.07906 1.47527 1.29134 1.22039 0.97887 0.94953 0.86568 1.21693 0.96186 1.00950 0.96224 1.21034 0.95047 0.98510 0.94426 1.19005 0.94345 0.94876 0.92152 1.21640 1.34734 1.07995 0.92151 0.91349 1.25968 0.95511 0.97539 1.01012 1.70113 1.41938 1.30090 1.15738 0.85583 0.79141 0.79360 0.77482 1.19035 1.21581 1.18999 1.21918 1.01129 0.98801 0.94179 1.21650 0.78835 1.02869 0.96943 1.21254 0.89332 0.94369 0.91468 1.20303 0.99177 0.90670 0.97872 1.21613 1.01872 0.99168 0.95547 1.21720 1.02508 1.00063 0.94766 1.67348 1.08265 1.30391 1.14575 0.89144 0.90670 0.87863 0.80428 0.82051 0.88648 0.88627 0.90416 0.94359 0.91369 0.99461 0.99998 0.93079 0.90596 0.93773 0.89328 0.89819 0.90674 0.91423 0.91087 0.93788 0.91412 0.94420 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.16 71.24 0.72 -0.41 16 2 C 0.14 2.51 6.78 42.57 0.29 2.80 16 3 C -0.17 -2.66 9.72 22.33 0.22 -2.44 16 4 C -0.04 -0.79 7.60 22.73 0.17 -0.61 16 5 C -0.20 -5.37 4.85 -20.00 -0.10 -5.47 16 6 C 0.57 17.18 6.34 86.78 0.55 17.73 16 7 O -0.57 -20.47 14.81 -3.88 -0.06 -20.53 16 8 N -0.60 -16.74 2.98 -823.17 -2.45 -19.19 16 9 C 0.11 2.70 5.58 86.22 0.48 3.18 16 10 C -0.11 -3.78 5.17 30.53 0.16 -3.62 16 11 C -0.07 -2.71 2.10 -10.77 -0.02 -2.73 16 12 C 0.03 1.69 4.45 29.85 0.13 1.82 16 13 C -0.53 -28.40 8.39 25.60 0.21 -28.18 16 14 H 0.07 3.42 7.05 -2.91 -0.02 3.40 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 17 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 C -0.12 -4.07 5.36 30.67 0.16 -3.91 16 22 C 0.12 3.36 6.43 86.36 0.55 3.91 16 23 C 0.17 4.73 5.50 42.89 0.24 4.97 16 24 C -0.06 -1.66 2.95 -11.54 -0.03 -1.69 16 25 C -0.12 -2.91 9.05 71.98 0.65 -2.26 16 26 C -0.13 -3.36 9.13 71.98 0.66 -2.70 16 27 N -0.50 -12.12 9.71 -171.06 -1.66 -13.78 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.59 8.07 -2.38 -0.02 0.57 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.16 2.31 7.50 -2.91 -0.02 2.28 16 33 H 0.10 2.14 4.80 -2.39 -0.01 2.13 16 34 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.08 2.74 6.91 -2.39 -0.02 2.72 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 40 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 45 H 0.08 2.39 5.38 -2.39 -0.01 2.38 16 46 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 50 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.84 399.86 4.55 -66.29 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.90 Total: 18.02 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.51 Total: -19.33 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.83 Total: -89.49 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.84 4.55 -66.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570096794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.150 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds