Wall clock time and date at job start Tue Mar 31 2020 15:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38130 * 120.03757 * 2 1 4 4 C 1.38261 * 120.07109 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.14220 * 359.95577 * 4 3 2 6 6 C 1.38093 * 120.06827 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03355 * 180.22387 * 2 1 3 8 8 N 1.39921 * 120.06818 * 0.02562 * 7 2 1 9 9 C 1.34776 * 120.00029 * 204.94274 * 8 7 2 10 10 O 1.21290 * 119.99621 * 5.90502 * 9 8 7 11 11 C 1.50699 * 120.00225 * 185.91042 * 9 8 7 12 12 H 1.09003 * 109.47397 * 64.27983 * 11 9 8 13 13 C 1.52996 * 109.47290 * 304.27672 * 11 9 8 14 14 N 1.46901 * 109.46999 * 184.27444 * 11 9 8 15 15 C 1.46855 * 111.00091 * 190.04473 * 14 11 9 16 16 C 1.53034 * 109.52545 * 174.16116 * 15 14 11 17 17 C 1.53120 * 109.27875 * 59.17790 * 16 15 14 18 18 C 1.52989 * 109.52687 * 182.43718 * 17 16 15 19 19 C 1.50698 * 109.47463 * 294.69122 * 18 17 16 20 20 H 1.07996 * 119.99810 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00303 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00325 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99940 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47070 * 90.00348 * 23 21 19 25 25 H 1.48496 * 109.47002 * 210.00557 * 23 21 19 26 26 H 1.48506 * 109.46949 * 330.00257 * 23 21 19 27 27 C 1.53121 * 109.16088 * 302.35079 * 17 16 15 28 28 C 1.46845 * 111.00142 * 65.83782 * 14 11 9 29 29 H 1.09003 * 109.46897 * 89.99806 * 1 2 3 30 30 H 1.08997 * 109.47494 * 210.00665 * 1 2 3 31 31 H 1.09004 * 109.46896 * 330.00353 * 1 2 3 32 32 H 1.08003 * 119.96538 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.93306 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.96767 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.03626 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00382 * 24.94842 * 8 7 2 37 37 H 1.09001 * 109.47049 * 59.99668 * 13 11 9 38 38 H 1.08993 * 109.47596 * 180.02562 * 13 11 9 39 39 H 1.09007 * 109.46928 * 300.00041 * 13 11 9 40 40 H 1.09003 * 109.45846 * 294.18295 * 15 14 11 41 41 H 1.09000 * 109.45765 * 54.14308 * 15 14 11 42 42 H 1.08999 * 109.50378 * 299.24440 * 16 15 14 43 43 H 1.08995 * 109.50456 * 179.12025 * 16 15 14 44 44 H 1.09012 * 109.52026 * 62.25214 * 17 16 15 45 45 H 1.09004 * 109.46822 * 54.68615 * 18 17 16 46 46 H 1.09002 * 109.47356 * 174.68117 * 18 17 16 47 47 H 0.97000 * 120.00166 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.49922 * 297.70475 * 27 17 16 49 49 H 1.09000 * 109.50023 * 177.59196 * 27 17 16 50 50 H 1.09003 * 109.46334 * 305.85447 * 28 14 11 51 51 H 1.09007 * 109.46248 * 65.81603 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0001 6 6 3.5909 -1.1979 0.0013 7 6 2.2020 -1.2021 -0.0047 8 7 1.5045 -2.4151 -0.0100 9 6 2.0859 -3.5289 0.4779 10 8 3.1696 -3.4602 1.0183 11 6 1.3897 -4.8594 0.3517 12 1 1.2963 -5.1222 -0.7020 13 6 -0.0024 -4.7682 0.9799 14 7 2.1735 -5.8899 1.0457 15 6 1.6589 -7.2326 0.7473 16 6 2.5830 -8.2838 1.3661 17 6 2.6517 -8.0680 2.8804 18 6 3.6215 -9.0777 3.4973 19 6 3.0734 -10.4708 3.3249 20 1 2.1276 -10.6210 2.8256 21 6 3.7788 -11.5536 3.8055 22 7 3.3007 -12.7694 3.6545 23 14 5.4144 -11.2939 4.6698 24 1 5.1820 -11.1144 6.1254 25 1 6.2840 -12.4772 4.4495 26 1 6.0773 -10.0834 4.1213 27 6 3.1444 -6.6462 3.1637 28 6 2.2039 -5.6425 2.4928 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6585 2.1311 0.0004 33 1 4.1194 2.1329 -0.0010 34 1 5.3562 0.0049 -0.0001 35 1 4.1343 -2.1312 0.0012 36 1 0.6026 -2.4545 -0.3648 37 1 -0.5840 -4.0035 0.4650 38 1 -0.5058 -5.7306 0.8891 39 1 0.0911 -4.5054 2.0337 40 1 0.6574 -7.3386 1.1645 41 1 1.6191 -7.3745 -0.3327 42 1 3.5813 -8.1872 0.9392 43 1 2.1923 -9.2797 1.1577 44 1 1.6602 -8.2029 3.3129 45 1 4.5884 -9.0036 2.9996 46 1 3.7422 -8.8635 4.5593 47 1 3.7972 -13.5312 3.9923 48 1 4.1515 -6.5239 2.7651 49 1 3.1546 -6.4723 4.2397 50 1 2.5601 -4.6296 2.6807 51 1 1.1999 -5.7560 2.9019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570628738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:45 Heat of formation + Delta-G solvation = -12.874704 kcal Electronic energy + Delta-G solvation = -28541.518181 eV Core-core repulsion = 24826.221215 eV Total energy + Delta-G solvation = -3715.296966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.11846 -39.46819 -38.13962 -35.14830 -35.08691 -32.88270 -32.53843 -30.93474 -30.39362 -29.56617 -27.68236 -27.15336 -25.25324 -23.74195 -22.85351 -22.44678 -21.54577 -20.63886 -19.92196 -18.80027 -18.08671 -17.11723 -16.63519 -16.23038 -15.75792 -15.44062 -15.23816 -14.56092 -14.31196 -14.25893 -14.20761 -14.03994 -14.00903 -13.54702 -13.41161 -12.93207 -12.82013 -12.74011 -12.51482 -12.45293 -12.24534 -12.08641 -11.76943 -11.70108 -11.67924 -11.44763 -11.27564 -10.89838 -10.70936 -10.56158 -10.53833 -10.15243 -9.76555 -9.68066 -9.53572 -9.18773 -8.97407 -8.92369 -8.47543 -8.26080 -8.12273 -5.98946 -3.95465 1.02463 1.17323 2.42281 2.67851 3.35552 3.43005 3.48714 3.57987 3.95613 4.32712 4.51212 4.51930 4.56473 4.72417 4.80990 4.86128 4.94934 5.15198 5.17462 5.22735 5.25960 5.29556 5.33281 5.35035 5.43742 5.48644 5.54208 5.56523 5.68375 5.77764 5.84310 5.89936 5.95946 6.03804 6.10003 6.16293 6.25206 6.30382 6.37103 6.37872 6.52395 6.63210 6.83247 6.90866 6.98131 7.05176 7.07835 7.25126 7.29869 7.38157 7.57365 7.87166 7.92749 8.60327 9.06077 9.64879 11.14411 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.002336 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.973606 B =11982.153564 C =12738.366348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.129 4.129 7 C 0.154 3.846 8 N -0.675 5.675 9 C 0.517 3.483 10 O -0.489 6.489 11 C 0.066 3.934 12 H 0.110 0.890 13 C -0.188 4.188 14 N -0.512 5.512 15 C 0.056 3.944 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.009 4.009 19 C -0.512 4.512 20 H 0.072 0.928 21 C 0.064 3.936 22 N -0.907 5.907 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.265 1.265 27 C -0.112 4.112 28 C 0.054 3.946 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.009 0.991 47 H 0.261 0.739 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 28.225 -10.554 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.122 4.122 6 C -0.149 4.149 7 C 0.059 3.941 8 N -0.320 5.320 9 C 0.304 3.696 10 O -0.361 6.361 11 C -0.047 4.047 12 H 0.128 0.872 13 C -0.247 4.247 14 N -0.237 5.237 15 C -0.071 4.071 16 C -0.138 4.138 17 C -0.091 4.091 18 C -0.047 4.047 19 C -0.550 4.550 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.546 5.546 23 Si 0.705 3.295 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.189 1.189 27 C -0.149 4.149 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.150 27.984 -10.291 30.444 hybrid contribution -0.447 -0.049 0.615 0.761 sum -6.596 27.935 -9.677 30.291 Atomic orbital electron populations 1.20721 0.91131 1.03004 1.02233 1.19604 0.95935 0.91861 1.05215 1.20799 0.94192 0.96721 1.00296 1.21102 0.94218 0.98117 1.02443 1.21086 1.00043 0.91961 0.99124 1.21469 0.92514 1.00020 1.00868 1.17646 0.91570 0.84587 1.00269 1.43679 1.18923 1.07139 1.62303 1.20854 0.86245 0.85157 0.77308 1.90683 1.20426 1.85561 1.39399 1.21636 0.91531 0.90265 1.01239 0.87182 1.22483 0.96375 1.03464 1.02364 1.61889 1.50933 1.01008 1.09844 1.22262 0.97083 0.87705 1.00041 1.21548 0.99346 0.97243 0.95627 1.21056 0.99759 0.93201 0.95112 1.19608 0.95067 0.94828 0.95148 1.21154 1.07477 0.89079 1.37325 0.90990 1.25031 0.97656 0.95174 0.95766 1.69914 1.39102 0.98240 1.47345 0.86807 0.84569 0.77856 0.80244 1.20466 1.21546 1.18922 1.21684 0.99445 0.94907 0.98908 1.22243 0.98216 1.00645 0.86226 0.91166 0.91890 0.91056 0.85921 0.86151 0.85804 0.83523 0.75527 0.92031 0.90581 0.91315 0.94858 0.91367 0.91791 0.90228 0.92530 0.96522 0.97244 0.92892 0.91485 0.92266 0.90354 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.44 36.01 0.34 -0.30 16 2 C -0.12 -1.06 5.90 -104.43 -0.62 -1.67 16 3 C -0.10 -0.82 9.70 -39.61 -0.38 -1.20 16 4 C -0.14 -1.18 10.04 -39.55 -0.40 -1.58 16 5 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 6 C -0.13 -1.51 8.72 -39.39 -0.34 -1.85 16 7 C 0.15 1.60 6.41 -83.69 -0.54 1.07 16 8 N -0.67 -6.12 4.88 -9.86 -0.05 -6.17 16 9 C 0.52 6.08 6.58 -10.99 -0.07 6.00 16 10 O -0.49 -7.59 11.72 5.55 0.07 -7.53 16 11 C 0.07 0.70 2.76 -68.87 -0.19 0.51 16 12 H 0.11 0.98 7.99 -51.93 -0.41 0.56 16 13 C -0.19 -1.58 8.31 37.16 0.31 -1.27 16 14 N -0.51 -7.26 4.32 -228.08 -0.98 -8.25 16 15 C 0.06 0.81 5.13 -3.83 -0.02 0.79 16 16 C -0.10 -1.84 5.15 -26.65 -0.14 -1.98 16 17 C -0.07 -1.45 2.20 -90.50 -0.20 -1.65 16 18 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 19 C -0.51 -14.50 9.00 -34.44 -0.31 -14.81 16 20 H 0.07 2.16 7.33 -52.49 -0.38 1.78 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 23 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 27 C -0.11 -1.96 5.38 -26.65 -0.14 -2.11 16 28 C 0.05 0.82 4.36 -3.84 -0.02 0.80 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 7.00 -51.93 -0.36 -0.03 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.15 1.99 5.80 -52.49 -0.30 1.68 16 36 H 0.41 2.44 6.43 -40.82 -0.26 2.18 16 37 H 0.06 0.34 7.23 -51.93 -0.38 -0.03 16 38 H 0.08 0.66 6.81 -51.93 -0.35 0.30 16 39 H 0.07 0.66 6.46 -51.92 -0.34 0.33 16 40 H 0.03 0.46 6.87 -51.93 -0.36 0.10 16 41 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.60 7.05 -51.93 -0.37 1.23 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 45 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 46 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.08 1.24 5.94 -51.93 -0.31 0.93 16 51 H 0.03 0.42 6.58 -51.93 -0.34 0.08 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -33.30 386.75 -10.66 -43.96 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.32 Total: 1.13 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.31 Total: -19.20 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.26 Total: -41.76 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.07 Total: -7.53 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.30 -10.66 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570628738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.088 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds