Wall clock time and date at job start Tue Mar 31 2020 15:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38130 * 120.03757 * 2 1 4 4 C 1.38261 * 120.07109 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.14220 * 359.95577 * 4 3 2 6 6 C 1.38093 * 120.06827 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03355 * 180.22387 * 2 1 3 8 8 N 1.39921 * 120.06818 * 0.02562 * 7 2 1 9 9 C 1.34776 * 120.00029 * 204.94274 * 8 7 2 10 10 O 1.21290 * 119.99621 * 5.90502 * 9 8 7 11 11 C 1.50699 * 120.00225 * 185.91042 * 9 8 7 12 12 H 1.09003 * 109.47397 * 64.27983 * 11 9 8 13 13 C 1.52996 * 109.47290 * 304.27672 * 11 9 8 14 14 N 1.46901 * 109.46999 * 184.27444 * 11 9 8 15 15 C 1.46855 * 111.00091 * 190.04473 * 14 11 9 16 16 C 1.53034 * 109.52545 * 174.16116 * 15 14 11 17 17 C 1.53120 * 109.27875 * 59.17790 * 16 15 14 18 18 C 1.52989 * 109.52687 * 182.43718 * 17 16 15 19 19 C 1.50698 * 109.47463 * 294.69122 * 18 17 16 20 20 H 1.07996 * 119.99810 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00303 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00325 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99940 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47070 * 90.00348 * 23 21 19 25 25 H 1.48496 * 109.47002 * 210.00557 * 23 21 19 26 26 H 1.48506 * 109.46949 * 330.00257 * 23 21 19 27 27 C 1.53121 * 109.16088 * 302.35079 * 17 16 15 28 28 C 1.46845 * 111.00142 * 65.83782 * 14 11 9 29 29 H 1.09003 * 109.46897 * 89.99806 * 1 2 3 30 30 H 1.08997 * 109.47494 * 210.00665 * 1 2 3 31 31 H 1.09004 * 109.46896 * 330.00353 * 1 2 3 32 32 H 1.08003 * 119.96538 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.93306 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.96767 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.03626 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00382 * 24.94842 * 8 7 2 37 37 H 1.09001 * 109.47049 * 59.99668 * 13 11 9 38 38 H 1.08993 * 109.47596 * 180.02562 * 13 11 9 39 39 H 1.09007 * 109.46928 * 300.00041 * 13 11 9 40 40 H 1.09003 * 109.45846 * 294.18295 * 15 14 11 41 41 H 1.09000 * 109.45765 * 54.14308 * 15 14 11 42 42 H 1.08999 * 109.50378 * 299.24440 * 16 15 14 43 43 H 1.08995 * 109.50456 * 179.12025 * 16 15 14 44 44 H 1.09012 * 109.52026 * 62.25214 * 17 16 15 45 45 H 1.09004 * 109.46822 * 54.68615 * 18 17 16 46 46 H 1.09002 * 109.47356 * 174.68117 * 18 17 16 47 47 H 0.97000 * 120.00166 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.49922 * 297.70475 * 27 17 16 49 49 H 1.09000 * 109.50023 * 177.59196 * 27 17 16 50 50 H 1.09003 * 109.46334 * 305.85447 * 28 14 11 51 51 H 1.09007 * 109.46248 * 65.81603 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0001 6 6 3.5909 -1.1979 0.0013 7 6 2.2020 -1.2021 -0.0047 8 7 1.5045 -2.4151 -0.0100 9 6 2.0859 -3.5289 0.4779 10 8 3.1696 -3.4602 1.0183 11 6 1.3897 -4.8594 0.3517 12 1 1.2963 -5.1222 -0.7020 13 6 -0.0024 -4.7682 0.9799 14 7 2.1735 -5.8899 1.0457 15 6 1.6589 -7.2326 0.7473 16 6 2.5830 -8.2838 1.3661 17 6 2.6517 -8.0680 2.8804 18 6 3.6215 -9.0777 3.4973 19 6 3.0734 -10.4708 3.3249 20 1 2.1276 -10.6210 2.8256 21 6 3.7788 -11.5536 3.8055 22 7 3.3007 -12.7694 3.6545 23 14 5.4144 -11.2939 4.6698 24 1 5.1820 -11.1144 6.1254 25 1 6.2840 -12.4772 4.4495 26 1 6.0773 -10.0834 4.1213 27 6 3.1444 -6.6462 3.1637 28 6 2.2039 -5.6425 2.4928 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6585 2.1311 0.0004 33 1 4.1194 2.1329 -0.0010 34 1 5.3562 0.0049 -0.0001 35 1 4.1343 -2.1312 0.0012 36 1 0.6026 -2.4545 -0.3648 37 1 -0.5840 -4.0035 0.4650 38 1 -0.5058 -5.7306 0.8891 39 1 0.0911 -4.5054 2.0337 40 1 0.6574 -7.3386 1.1645 41 1 1.6191 -7.3745 -0.3327 42 1 3.5813 -8.1872 0.9392 43 1 2.1923 -9.2797 1.1577 44 1 1.6602 -8.2029 3.3129 45 1 4.5884 -9.0036 2.9996 46 1 3.7422 -8.8635 4.5593 47 1 3.7972 -13.5312 3.9923 48 1 4.1515 -6.5239 2.7651 49 1 3.1546 -6.4723 4.2397 50 1 2.5601 -4.6296 2.6807 51 1 1.1999 -5.7560 2.9019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570628738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:43 Heat of formation + Delta-G solvation = -33.236496 kcal Electronic energy + Delta-G solvation = -28542.401135 eV Core-core repulsion = 24826.221215 eV Total energy + Delta-G solvation = -3716.179920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96302 -40.42008 -39.17813 -36.53494 -35.93715 -34.53598 -33.48601 -32.20617 -31.73670 -30.48363 -29.15952 -27.71023 -26.34090 -25.08011 -24.06464 -23.57249 -22.36668 -21.94019 -21.01031 -20.22696 -18.93607 -18.74804 -17.94196 -17.12888 -16.56773 -16.35815 -16.31672 -16.06148 -15.63115 -15.35475 -15.26151 -14.95273 -14.81152 -14.70592 -14.63757 -14.15642 -14.06068 -13.87905 -13.53519 -13.38193 -13.19394 -13.13232 -13.05434 -12.88616 -12.73237 -12.48522 -12.32964 -12.29665 -12.12207 -11.91195 -11.87027 -11.66277 -11.46633 -11.26090 -10.98558 -10.93323 -10.71549 -10.47824 -9.64777 -9.20245 -8.96200 -8.26944 -6.28094 0.31965 0.47050 1.33544 1.35787 1.47942 1.59356 1.90070 2.36645 2.88780 2.93685 3.08426 3.55850 3.88745 3.94596 3.96859 3.98660 4.03512 4.12118 4.16547 4.25294 4.38602 4.41915 4.45282 4.53837 4.58194 4.64320 4.65448 4.71251 4.77911 4.81225 4.83171 4.84371 4.97899 5.01351 5.04752 5.12065 5.15970 5.22967 5.29208 5.33980 5.37222 5.42010 5.47103 5.50106 5.60314 5.66401 5.71502 5.73743 6.06933 6.13414 6.14493 6.33646 6.45950 6.78335 7.13072 7.35507 8.89332 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.002336 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.973606 B =11982.153564 C =12738.366348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.155 4.155 7 C 0.134 3.866 8 N -0.658 5.658 9 C 0.516 3.484 10 O -0.534 6.534 11 C 0.068 3.932 12 H 0.134 0.866 13 C -0.182 4.182 14 N -0.530 5.530 15 C 0.068 3.932 16 C -0.097 4.097 17 C -0.068 4.068 18 C -0.007 4.007 19 C -0.514 4.514 20 H 0.040 0.960 21 C 0.004 3.996 22 N -0.951 5.951 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.254 1.254 27 C -0.106 4.106 28 C 0.066 3.934 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.424 0.576 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.010 0.990 46 H 0.011 0.989 47 H 0.264 0.736 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 31.345 -11.136 34.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.159 4.159 5 C -0.138 4.138 6 C -0.176 4.176 7 C 0.039 3.961 8 N -0.304 5.304 9 C 0.304 3.696 10 O -0.410 6.410 11 C -0.044 4.044 12 H 0.151 0.849 13 C -0.241 4.241 14 N -0.255 5.255 15 C -0.059 4.059 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.044 4.044 19 C -0.552 4.552 20 H 0.059 0.941 21 C -0.193 4.193 22 N -0.592 5.592 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.178 1.178 27 C -0.144 4.144 28 C -0.062 4.062 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.264 0.736 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.569 31.140 -10.898 33.849 hybrid contribution -0.062 -0.958 0.732 1.207 sum -7.631 30.182 -10.166 32.750 Atomic orbital electron populations 1.20810 0.88770 1.03894 1.03589 1.19978 0.97668 0.91146 1.03674 1.21220 0.94201 0.97776 0.99117 1.21418 0.94848 0.98330 1.01305 1.21257 1.00637 0.92179 0.99706 1.21404 0.93580 0.99603 1.02985 1.17805 0.91305 0.85629 1.01318 1.43465 1.19344 1.06214 1.61411 1.21086 0.85690 0.86049 0.76748 1.90681 1.22400 1.86214 1.41663 1.21739 0.92005 0.88485 1.02178 0.84886 1.22449 0.95044 1.04823 1.01785 1.61736 1.52735 1.01685 1.09342 1.22088 0.96127 0.86700 1.01013 1.21430 0.99596 0.97643 0.94845 1.20953 0.98263 0.93556 0.95870 1.19572 0.95619 0.93755 0.95468 1.21429 1.06334 0.91254 1.36202 0.94136 1.25924 1.01640 0.94856 0.96831 1.70051 1.40952 0.99228 1.48960 0.85767 0.79941 0.78193 0.79405 1.19334 1.20988 1.17821 1.21588 0.99262 0.93953 0.99574 1.22041 0.97908 0.99204 0.87030 0.89442 0.91400 0.89828 0.83112 0.83860 0.85237 0.86274 0.73623 0.88559 0.90339 0.92531 0.93781 0.89127 0.93144 0.92736 0.93074 0.97124 0.97103 0.92690 0.92947 0.91766 0.90869 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.44 71.24 0.67 -0.19 16 2 C -0.12 -1.79 5.90 -19.74 -0.12 -1.90 16 3 C -0.10 -1.40 9.70 22.25 0.22 -1.18 16 4 C -0.14 -2.13 10.04 22.29 0.22 -1.90 16 5 C -0.12 -2.35 10.04 22.25 0.22 -2.13 16 6 C -0.16 -3.74 8.72 22.39 0.20 -3.54 16 7 C 0.13 2.65 6.41 38.15 0.24 2.89 16 8 N -0.66 -10.78 4.88 -303.50 -1.48 -12.26 16 9 C 0.52 11.61 6.58 87.66 0.58 12.19 16 10 O -0.53 -16.92 11.72 -3.06 -0.04 -16.95 16 11 C 0.07 1.28 2.76 44.17 0.12 1.41 16 12 H 0.13 1.94 7.99 -2.39 -0.02 1.92 16 13 C -0.18 -2.48 8.31 71.98 0.60 -1.88 16 14 N -0.53 -14.42 4.32 -875.50 -3.78 -18.20 16 15 C 0.07 1.87 5.13 86.32 0.44 2.31 16 16 C -0.10 -3.64 5.15 30.65 0.16 -3.48 16 17 C -0.07 -2.74 2.20 -10.72 -0.02 -2.76 16 18 C -0.01 -0.33 3.52 29.84 0.11 -0.23 16 19 C -0.51 -29.98 9.00 25.60 0.23 -29.75 16 20 H 0.04 2.55 7.33 -2.91 -0.02 2.53 16 21 C 0.00 0.23 5.47 84.66 0.46 0.69 16 22 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 23 Si 0.94 46.22 27.47 68.60 1.88 48.11 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 27 C -0.11 -3.73 5.38 30.64 0.16 -3.56 16 28 C 0.07 1.94 4.36 86.32 0.38 2.32 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.46 7.00 -2.39 -0.02 0.44 16 31 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.12 3.49 5.80 -2.91 -0.02 3.48 16 36 H 0.42 3.77 6.43 -92.71 -0.60 3.17 16 37 H 0.10 0.64 7.23 -2.39 -0.02 0.62 16 38 H 0.08 1.08 6.81 -2.39 -0.02 1.07 16 39 H 0.06 0.94 6.46 -2.38 -0.02 0.92 16 40 H 0.04 1.13 6.87 -2.39 -0.02 1.12 16 41 H 0.09 2.11 8.01 -2.39 -0.02 2.09 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 2.28 7.05 -2.39 -0.02 2.26 16 44 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 46 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 47 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.07 2.30 5.94 -2.39 -0.01 2.28 16 51 H 0.04 1.11 6.58 -2.38 -0.02 1.09 16 Total: -1.00 -75.67 386.75 2.03 -73.64 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.27 Total: 16.54 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.87 Total: -30.70 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.96 Total: -90.63 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.04 Total: -16.95 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.11 kcal Total: -75.67 2.03 -73.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570628738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.405 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds