Wall clock time and date at job start Tue Mar 31 2020 15:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38134 * 120.03587 * 2 1 4 4 C 1.38260 * 120.06814 * 179.97438 * 3 2 1 5 5 C 1.38307 * 120.14293 * 0.04744 * 4 3 2 6 6 C 1.38096 * 120.07026 * 359.67365 * 5 4 3 7 7 C 1.38849 * 120.03283 * 179.97438 * 2 1 3 8 8 N 1.39928 * 120.07346 * 0.02562 * 7 2 1 9 9 C 1.34768 * 120.00326 * 146.24736 * 8 7 2 10 10 O 1.21292 * 120.00361 * 5.02332 * 9 8 7 11 11 C 1.50703 * 119.99955 * 185.01771 * 9 8 7 12 12 H 1.09000 * 109.47104 * 309.23249 * 11 9 8 13 13 C 1.52998 * 109.47058 * 69.23837 * 11 9 8 14 14 N 1.46901 * 109.47028 * 189.23233 * 11 9 8 15 15 C 1.46855 * 111.00079 * 60.28706 * 14 11 9 16 16 C 1.53032 * 109.52613 * 174.15981 * 15 14 11 17 17 C 1.53119 * 109.27943 * 59.17426 * 16 15 14 18 18 C 1.52997 * 109.52304 * 182.43876 * 17 16 15 19 19 C 1.50704 * 109.47054 * 185.00489 * 18 17 16 20 20 H 1.07993 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99921 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47039 * 119.99984 * 23 21 19 26 26 H 1.48498 * 109.46811 * 240.00135 * 23 21 19 27 27 C 1.53117 * 109.16457 * 302.35079 * 17 16 15 28 28 C 1.46843 * 111.00344 * 296.07947 * 14 11 9 29 29 H 1.08996 * 109.46801 * 270.02595 * 1 2 3 30 30 H 1.09008 * 109.46684 * 30.01786 * 1 2 3 31 31 H 1.08992 * 109.47617 * 150.01723 * 1 2 3 32 32 H 1.07998 * 119.96772 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.93351 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.96563 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.03710 * 180.31987 * 6 5 4 36 36 H 0.97004 * 119.99721 * 326.24707 * 8 7 2 37 37 H 1.08998 * 109.46951 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46747 * 299.99274 * 13 11 9 39 39 H 1.09000 * 109.47643 * 59.99742 * 13 11 9 40 40 H 1.09003 * 109.45962 * 54.14130 * 15 14 11 41 41 H 1.09004 * 109.45272 * 294.17424 * 15 14 11 42 42 H 1.09005 * 109.50415 * 299.23710 * 16 15 14 43 43 H 1.08994 * 109.50374 * 179.12483 * 16 15 14 44 44 H 1.09009 * 109.51430 * 62.25596 * 17 16 15 45 45 H 1.08998 * 109.47419 * 305.00508 * 18 17 16 46 46 H 1.09004 * 109.47125 * 65.00926 * 18 17 16 47 47 H 0.97001 * 120.00177 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.50145 * 177.59292 * 27 17 16 49 49 H 1.09003 * 109.49937 * 297.71253 * 27 17 16 50 50 H 1.09002 * 109.45909 * 305.85298 * 28 14 11 51 51 H 1.08994 * 109.46584 * 65.81713 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2762 0.0010 0.0001 6 6 3.5909 -1.1979 0.0059 7 6 2.2019 -1.2021 0.0005 8 7 1.5045 -2.4152 0.0005 9 6 2.0102 -3.4832 -0.6475 10 8 3.1109 -3.4206 -1.1531 11 6 1.2080 -4.7554 -0.7437 12 1 0.8599 -5.0413 0.2488 13 6 0.0046 -4.5312 -1.6615 14 7 2.0509 -5.8252 -1.2941 15 6 3.2151 -6.0732 -0.4339 16 6 3.9888 -7.2854 -0.9573 17 6 4.4412 -7.0143 -2.3947 18 6 5.1628 -8.2463 -2.9446 19 6 5.7146 -7.9365 -4.3123 20 1 5.5659 -6.9586 -4.7458 21 6 6.4092 -8.9015 -5.0102 22 7 6.5908 -10.0923 -4.4822 23 14 7.0939 -8.5173 -6.7054 24 1 6.7564 -7.1178 -7.0698 25 1 8.5694 -8.6840 -6.6927 26 1 6.4994 -9.4447 -7.7011 27 6 3.2143 -6.7114 -3.2593 28 6 2.4631 -5.5158 -2.6691 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5142 31 1 -0.3634 -0.8900 -0.5135 32 1 1.6585 2.1312 -0.0004 33 1 4.1194 2.1329 0.0010 34 1 5.3562 0.0049 0.0001 35 1 4.1343 -2.1312 0.0108 36 1 0.6571 -2.4874 0.4670 37 1 -0.5758 -5.4512 -1.7308 38 1 -0.6209 -3.7374 -1.2531 39 1 0.3528 -4.2452 -2.6541 40 1 2.8791 -6.2687 0.5844 41 1 3.8642 -5.1976 -0.4403 42 1 3.3443 -8.1643 -0.9383 43 1 4.8613 -7.4597 -0.3277 44 1 5.1168 -6.1589 -2.4086 45 1 5.9799 -8.5174 -2.2761 46 1 4.4606 -9.0770 -3.0158 47 1 7.0798 -10.7711 -4.9730 48 1 3.5337 -6.4756 -4.2744 49 1 2.5577 -7.5813 -3.2765 50 1 1.5810 -5.3066 -3.2743 51 1 3.1158 -4.6429 -2.6649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570628739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:51 Heat of formation + Delta-G solvation = -15.532143 kcal Electronic energy + Delta-G solvation = -28941.070071 eV Core-core repulsion = 25225.657869 eV Total energy + Delta-G solvation = -3715.412201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.18827 -39.47677 -37.75830 -35.08995 -34.87633 -32.87044 -32.60552 -30.86401 -30.30834 -29.48696 -27.29623 -27.13774 -24.82777 -23.75421 -22.75774 -22.20446 -21.46236 -20.81329 -20.05617 -18.95657 -17.90048 -17.14266 -16.25967 -16.08133 -15.72316 -15.60815 -15.14788 -14.58967 -14.38869 -14.24795 -14.15456 -14.07734 -13.57973 -13.39860 -13.20440 -12.87127 -12.77607 -12.71680 -12.37437 -12.27345 -12.04532 -11.78872 -11.69320 -11.50016 -11.48113 -11.29283 -11.03978 -10.75118 -10.64839 -10.54589 -10.36587 -10.18400 -10.08449 -9.82188 -9.41006 -8.95093 -8.93123 -8.77712 -8.30092 -8.25566 -7.91059 -5.90565 -3.91185 1.04790 1.20078 2.38190 2.82419 3.36418 3.43790 3.48572 3.58502 3.96554 4.45495 4.53867 4.55951 4.59840 4.79201 4.89510 4.91428 4.98222 5.18692 5.21853 5.26423 5.29881 5.43979 5.45108 5.47987 5.56728 5.59073 5.64054 5.77293 5.85552 5.88486 5.97369 6.03475 6.08469 6.18156 6.20767 6.27809 6.32316 6.37977 6.49311 6.55949 6.67957 6.76176 6.86087 7.06304 7.08529 7.21624 7.31086 7.34419 7.41628 7.79725 7.94259 7.96775 8.11366 8.55440 9.15858 9.71921 11.20911 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002716 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.830394 B =10308.144202 C =11146.226024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.135 4.135 5 C -0.107 4.107 6 C -0.118 4.118 7 C 0.146 3.854 8 N -0.674 5.674 9 C 0.482 3.518 10 O -0.503 6.503 11 C 0.066 3.934 12 H 0.105 0.895 13 C -0.143 4.143 14 N -0.504 5.504 15 C 0.045 3.955 16 C -0.108 4.108 17 C -0.079 4.079 18 C 0.028 3.972 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.096 4.096 28 C 0.033 3.967 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.408 0.592 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.258 0.742 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 20.820 13.196 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.154 4.154 5 C -0.125 4.125 6 C -0.138 4.138 7 C 0.051 3.949 8 N -0.321 5.321 9 C 0.269 3.731 10 O -0.376 6.376 11 C -0.047 4.047 12 H 0.123 0.877 13 C -0.201 4.201 14 N -0.227 5.227 15 C -0.082 4.082 16 C -0.146 4.146 17 C -0.098 4.098 18 C -0.009 4.009 19 C -0.549 4.549 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.134 4.134 28 C -0.094 4.094 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.333 20.147 12.729 28.338 hybrid contribution 0.562 0.869 -0.670 1.233 sum -14.771 21.017 12.060 28.378 Atomic orbital electron populations 1.20721 0.91082 1.03049 1.02181 1.19683 0.96000 0.91940 1.04400 1.20815 0.94193 0.96779 1.00593 1.21118 0.94232 0.98119 1.01925 1.21102 1.00113 0.92002 0.99304 1.21383 0.92635 0.99656 1.00161 1.17664 0.91453 0.84836 1.00903 1.43881 1.25078 1.09609 1.53503 1.22783 0.87761 0.85659 0.76911 1.90683 1.20005 1.82199 1.44758 1.21976 0.94741 0.86730 1.01278 0.87720 1.21863 0.95700 1.02876 0.99648 1.62484 1.20581 1.36116 1.03507 1.22314 0.91414 0.99523 0.94993 1.21640 0.98445 0.96576 0.97917 1.21205 0.95889 1.00531 0.92187 1.19122 0.94780 0.91687 0.95317 1.21317 1.33598 0.98128 1.01815 0.92656 1.25019 0.96481 0.95185 0.97887 1.69981 1.42052 1.03857 1.37851 0.86610 0.78716 0.78352 0.84789 1.19777 1.21153 1.21132 1.21504 0.96312 0.96231 0.99332 1.22588 0.99314 0.99953 0.87539 0.91214 0.91151 0.91745 0.85919 0.86102 0.85777 0.84141 0.75646 0.90058 0.92145 0.91462 0.92334 0.92842 0.91877 0.92270 0.92899 0.96870 0.96600 0.93243 0.91073 0.92297 0.91868 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.47 36.01 0.34 -0.34 16 2 C -0.12 -1.07 5.90 -104.43 -0.62 -1.69 16 3 C -0.11 -0.91 9.70 -39.61 -0.38 -1.30 16 4 C -0.14 -1.24 10.04 -39.55 -0.40 -1.64 16 5 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 6 C -0.12 -1.48 8.71 -39.39 -0.34 -1.82 16 7 C 0.15 1.60 6.30 -83.69 -0.53 1.07 16 8 N -0.67 -6.35 4.77 -9.86 -0.05 -6.39 16 9 C 0.48 5.82 6.29 -10.99 -0.07 5.75 16 10 O -0.50 -8.07 9.07 5.55 0.05 -8.02 16 11 C 0.07 0.71 2.83 -68.86 -0.20 0.51 16 12 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 13 C -0.14 -1.25 8.83 37.16 0.33 -0.92 16 14 N -0.50 -7.35 4.68 -228.08 -1.07 -8.42 16 15 C 0.04 0.70 5.01 -3.83 -0.02 0.68 16 16 C -0.11 -1.99 5.38 -26.65 -0.14 -2.13 16 17 C -0.08 -1.73 2.20 -90.50 -0.20 -1.93 16 18 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 19 C -0.51 -14.74 8.45 -34.44 -0.29 -15.03 16 20 H 0.06 1.57 7.08 -52.49 -0.37 1.20 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 23 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 28 C 0.03 0.55 4.74 -3.84 -0.02 0.53 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 8.09 -51.92 -0.42 -0.05 16 31 H 0.06 0.36 7.15 -51.93 -0.37 -0.01 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.14 2.02 6.13 -52.49 -0.32 1.70 16 36 H 0.41 2.50 7.81 -40.82 -0.32 2.18 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 40 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 41 H 0.05 0.92 5.87 -51.93 -0.30 0.62 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.07 1.52 7.05 -51.93 -0.37 1.16 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.06 0.95 5.91 -51.93 -0.31 0.64 16 51 H 0.06 1.21 5.52 -51.93 -0.29 0.92 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -33.53 390.46 -11.20 -44.73 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.44 Total: 1.56 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.29 Total: -19.71 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.38 Total: -41.71 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.05 Total: -8.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.53 -11.20 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570628739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.199 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds