Wall clock time and date at job start Tue Mar 31 2020 15:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38134 * 120.03587 * 2 1 4 4 C 1.38260 * 120.06814 * 179.97438 * 3 2 1 5 5 C 1.38307 * 120.14293 * 0.04744 * 4 3 2 6 6 C 1.38096 * 120.07026 * 359.67365 * 5 4 3 7 7 C 1.38849 * 120.03283 * 179.97438 * 2 1 3 8 8 N 1.39928 * 120.07346 * 0.02562 * 7 2 1 9 9 C 1.34768 * 120.00326 * 146.24736 * 8 7 2 10 10 O 1.21292 * 120.00361 * 5.02332 * 9 8 7 11 11 C 1.50703 * 119.99955 * 185.01771 * 9 8 7 12 12 H 1.09000 * 109.47104 * 309.23249 * 11 9 8 13 13 C 1.52998 * 109.47058 * 69.23837 * 11 9 8 14 14 N 1.46901 * 109.47028 * 189.23233 * 11 9 8 15 15 C 1.46855 * 111.00079 * 60.28706 * 14 11 9 16 16 C 1.53032 * 109.52613 * 174.15981 * 15 14 11 17 17 C 1.53119 * 109.27943 * 59.17426 * 16 15 14 18 18 C 1.52997 * 109.52304 * 182.43876 * 17 16 15 19 19 C 1.50704 * 109.47054 * 185.00489 * 18 17 16 20 20 H 1.07993 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99921 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47039 * 119.99984 * 23 21 19 26 26 H 1.48498 * 109.46811 * 240.00135 * 23 21 19 27 27 C 1.53117 * 109.16457 * 302.35079 * 17 16 15 28 28 C 1.46843 * 111.00344 * 296.07947 * 14 11 9 29 29 H 1.08996 * 109.46801 * 270.02595 * 1 2 3 30 30 H 1.09008 * 109.46684 * 30.01786 * 1 2 3 31 31 H 1.08992 * 109.47617 * 150.01723 * 1 2 3 32 32 H 1.07998 * 119.96772 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.93351 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.96563 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.03710 * 180.31987 * 6 5 4 36 36 H 0.97004 * 119.99721 * 326.24707 * 8 7 2 37 37 H 1.08998 * 109.46951 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46747 * 299.99274 * 13 11 9 39 39 H 1.09000 * 109.47643 * 59.99742 * 13 11 9 40 40 H 1.09003 * 109.45962 * 54.14130 * 15 14 11 41 41 H 1.09004 * 109.45272 * 294.17424 * 15 14 11 42 42 H 1.09005 * 109.50415 * 299.23710 * 16 15 14 43 43 H 1.08994 * 109.50374 * 179.12483 * 16 15 14 44 44 H 1.09009 * 109.51430 * 62.25596 * 17 16 15 45 45 H 1.08998 * 109.47419 * 305.00508 * 18 17 16 46 46 H 1.09004 * 109.47125 * 65.00926 * 18 17 16 47 47 H 0.97001 * 120.00177 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.50145 * 177.59292 * 27 17 16 49 49 H 1.09003 * 109.49937 * 297.71253 * 27 17 16 50 50 H 1.09002 * 109.45909 * 305.85298 * 28 14 11 51 51 H 1.08994 * 109.46584 * 65.81713 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2762 0.0010 0.0001 6 6 3.5909 -1.1979 0.0059 7 6 2.2019 -1.2021 0.0005 8 7 1.5045 -2.4152 0.0005 9 6 2.0102 -3.4832 -0.6475 10 8 3.1109 -3.4206 -1.1531 11 6 1.2080 -4.7554 -0.7437 12 1 0.8599 -5.0413 0.2488 13 6 0.0046 -4.5312 -1.6615 14 7 2.0509 -5.8252 -1.2941 15 6 3.2151 -6.0732 -0.4339 16 6 3.9888 -7.2854 -0.9573 17 6 4.4412 -7.0143 -2.3947 18 6 5.1628 -8.2463 -2.9446 19 6 5.7146 -7.9365 -4.3123 20 1 5.5659 -6.9586 -4.7458 21 6 6.4092 -8.9015 -5.0102 22 7 6.5908 -10.0923 -4.4822 23 14 7.0939 -8.5173 -6.7054 24 1 6.7564 -7.1178 -7.0698 25 1 8.5694 -8.6840 -6.6927 26 1 6.4994 -9.4447 -7.7011 27 6 3.2143 -6.7114 -3.2593 28 6 2.4631 -5.5158 -2.6691 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5142 31 1 -0.3634 -0.8900 -0.5135 32 1 1.6585 2.1312 -0.0004 33 1 4.1194 2.1329 0.0010 34 1 5.3562 0.0049 0.0001 35 1 4.1343 -2.1312 0.0108 36 1 0.6571 -2.4874 0.4670 37 1 -0.5758 -5.4512 -1.7308 38 1 -0.6209 -3.7374 -1.2531 39 1 0.3528 -4.2452 -2.6541 40 1 2.8791 -6.2687 0.5844 41 1 3.8642 -5.1976 -0.4403 42 1 3.3443 -8.1643 -0.9383 43 1 4.8613 -7.4597 -0.3277 44 1 5.1168 -6.1589 -2.4086 45 1 5.9799 -8.5174 -2.2761 46 1 4.4606 -9.0770 -3.0158 47 1 7.0798 -10.7711 -4.9730 48 1 3.5337 -6.4756 -4.2744 49 1 2.5577 -7.5813 -3.2765 50 1 1.5810 -5.3066 -3.2743 51 1 3.1158 -4.6429 -2.6649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570628739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:48 Heat of formation + Delta-G solvation = -36.052719 kcal Electronic energy + Delta-G solvation = -28941.959910 eV Core-core repulsion = 25225.657869 eV Total energy + Delta-G solvation = -3716.302040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.11516 -40.42042 -38.97211 -36.37911 -35.94584 -34.58262 -33.51480 -32.25835 -31.64441 -30.42778 -29.01824 -27.73730 -26.09262 -25.27728 -23.96300 -23.32470 -22.58374 -22.01591 -21.04622 -20.55564 -18.77554 -18.43986 -18.05531 -17.13163 -16.65685 -16.53855 -16.44141 -16.06554 -15.74586 -15.24941 -15.20218 -14.96581 -14.72824 -14.56329 -14.43424 -14.17364 -14.08983 -13.67961 -13.37083 -13.30892 -13.17362 -13.02558 -12.99371 -12.75085 -12.62979 -12.45166 -12.32256 -12.24324 -12.23167 -12.11553 -11.87874 -11.65795 -11.40161 -11.26009 -11.06429 -10.85525 -10.71429 -10.53486 -9.69048 -9.14801 -9.02829 -8.19273 -6.28719 0.28828 0.43586 1.36389 1.36757 1.50355 1.51237 2.03583 2.39846 2.82715 2.86005 3.13179 3.64108 3.89183 3.93821 3.95144 3.98770 4.10095 4.16461 4.21173 4.23443 4.39605 4.45588 4.51436 4.55041 4.61496 4.67598 4.75462 4.80441 4.84031 4.85228 4.87773 4.90076 4.99292 5.05335 5.09841 5.15595 5.27183 5.30089 5.35281 5.36836 5.40612 5.43653 5.47188 5.56315 5.59639 5.63144 5.78751 5.87410 6.05205 6.06247 6.11329 6.29414 6.42213 6.86566 7.11846 7.39233 8.92879 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002716 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.830394 B =10308.144202 C =11146.226024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.136 4.136 5 C -0.125 4.125 6 C -0.146 4.146 7 C 0.128 3.872 8 N -0.656 5.656 9 C 0.480 3.520 10 O -0.549 6.549 11 C 0.067 3.933 12 H 0.139 0.861 13 C -0.139 4.139 14 N -0.506 5.506 15 C 0.055 3.945 16 C -0.103 4.103 17 C -0.072 4.072 18 C 0.036 3.964 19 C -0.530 4.530 20 H 0.054 0.946 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.275 1.275 27 C -0.090 4.090 28 C 0.048 3.952 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.425 0.575 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.032 0.968 45 H -0.016 1.016 46 H -0.007 1.007 47 H 0.263 0.737 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.084 0.916 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.884 23.181 13.677 32.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.126 4.126 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.167 4.167 7 C 0.033 3.967 8 N -0.303 5.303 9 C 0.268 3.732 10 O -0.426 6.426 11 C -0.046 4.046 12 H 0.156 0.844 13 C -0.197 4.197 14 N -0.229 5.229 15 C -0.073 4.073 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.001 4.001 19 C -0.568 4.568 20 H 0.072 0.928 21 C -0.198 4.198 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.200 1.200 27 C -0.128 4.128 28 C -0.079 4.079 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.265 0.735 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.002 0.998 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.103 0.897 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.354 22.534 13.244 31.939 hybrid contribution 1.492 0.189 -0.760 1.685 sum -16.862 22.723 12.485 30.928 Atomic orbital electron populations 1.20814 0.88482 1.03985 1.03662 1.20073 0.97867 0.91123 1.02694 1.21247 0.94095 0.97946 0.99323 1.21427 0.94965 0.98214 1.00860 1.21252 1.00556 0.92394 1.00195 1.21311 0.93853 0.99074 1.02419 1.17806 0.91054 0.86016 1.01814 1.43631 1.25372 1.08619 1.52712 1.22958 0.87184 0.86525 0.76507 1.90695 1.22043 1.82965 1.46882 1.22203 0.94162 0.84886 1.03311 0.84370 1.21889 0.94983 1.04510 0.98299 1.62433 1.19896 1.38245 1.02294 1.22162 0.91537 0.97100 0.96478 1.21545 0.98862 0.98154 0.95525 1.21030 0.95990 0.97193 0.94836 1.18993 0.93610 0.93053 0.94442 1.21643 1.34028 0.98218 1.02885 0.92809 1.25944 0.96674 0.94903 1.02322 1.70107 1.42730 1.04888 1.39731 0.85468 0.78072 0.78545 0.79410 1.18995 1.20367 1.20033 1.21373 0.95676 0.97690 0.98063 1.22320 0.99283 0.97024 0.89310 0.89309 0.89925 0.91159 0.82966 0.83848 0.85589 0.87138 0.73515 0.89305 0.88667 0.93257 0.89251 0.94566 0.91899 0.92543 0.94959 0.99792 0.98902 0.92849 0.93288 0.92726 0.89734 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.47 71.24 0.67 -0.23 16 2 C -0.12 -1.80 5.90 -19.74 -0.12 -1.92 16 3 C -0.11 -1.58 9.70 22.25 0.22 -1.36 16 4 C -0.14 -2.32 10.04 22.29 0.22 -2.09 16 5 C -0.13 -2.78 10.04 22.25 0.22 -2.55 16 6 C -0.15 -3.82 8.71 22.39 0.20 -3.62 16 7 C 0.13 2.68 6.30 38.15 0.24 2.92 16 8 N -0.66 -11.12 4.77 -303.50 -1.45 -12.56 16 9 C 0.48 11.10 6.29 87.66 0.55 11.66 16 10 O -0.55 -18.21 9.07 -3.07 -0.03 -18.23 16 11 C 0.07 1.27 2.83 44.17 0.13 1.39 16 12 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 13 C -0.14 -1.95 8.83 71.98 0.64 -1.32 16 14 N -0.51 -14.18 4.68 -875.50 -4.10 -18.28 16 15 C 0.05 1.70 5.01 86.32 0.43 2.14 16 16 C -0.10 -3.92 5.38 30.64 0.16 -3.75 16 17 C -0.07 -3.30 2.20 -10.72 -0.02 -3.32 16 18 C 0.04 2.04 4.45 29.85 0.13 2.17 16 19 C -0.53 -31.91 8.45 25.60 0.22 -31.70 16 20 H 0.05 3.18 7.08 -2.91 -0.02 3.16 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -59.13 13.29 21.45 0.28 -58.85 16 23 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 27 C -0.09 -3.74 5.15 30.65 0.16 -3.58 16 28 C 0.05 1.61 4.74 86.33 0.41 2.02 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 31 H 0.07 0.50 7.15 -2.39 -0.02 0.48 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.11 3.50 6.13 -2.91 -0.02 3.49 16 36 H 0.43 3.76 7.81 -92.70 -0.72 3.04 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.89 6.22 -2.39 -0.01 0.88 16 40 H 0.09 2.25 8.12 -2.39 -0.02 2.23 16 41 H 0.04 1.29 5.87 -2.39 -0.01 1.27 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.05 2.20 7.05 -2.39 -0.02 2.18 16 49 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.08 2.47 5.91 -2.39 -0.01 2.46 16 51 H 0.04 1.73 5.52 -2.39 -0.01 1.72 16 Total: -1.00 -77.84 390.46 1.85 -75.98 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.19 Total: 16.10 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.92 Total: -32.78 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -5.26 Total: -89.69 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.03 Total: -18.23 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.84 1.85 -75.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570628739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds