Wall clock time and date at job start Tue Mar 31 2020 15:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.96674 * 2 1 4 4 C 1.38252 * 120.14475 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06815 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.03604 * 179.97438 * 5 4 3 7 7 C 1.38853 * 119.93114 * 359.97438 * 5 4 3 8 8 N 1.39923 * 120.06992 * 180.02562 * 7 5 4 9 9 C 1.34778 * 119.99712 * 155.43452 * 8 7 5 10 10 O 1.21290 * 120.00212 * 354.47460 * 9 8 7 11 11 C 1.50700 * 119.99867 * 174.48123 * 9 8 7 12 12 N 1.46899 * 109.47255 * 179.97438 * 11 9 8 13 13 C 1.46850 * 110.99975 * 294.20752 * 12 11 9 14 14 C 1.53034 * 109.52237 * 174.15667 * 13 12 11 15 15 C 1.53118 * 109.27761 * 59.18016 * 14 13 12 16 16 C 1.53008 * 109.57692 * 182.40354 * 15 14 13 17 17 C 1.50700 * 109.47103 * 294.71748 * 16 15 14 18 18 H 1.07996 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99637 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99743 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47518 * 89.99875 * 21 19 17 23 23 H 1.48495 * 109.47170 * 209.99920 * 21 19 17 24 24 H 1.48504 * 109.47190 * 330.00091 * 21 19 17 25 25 C 1.53116 * 109.16284 * 302.34515 * 15 14 13 26 26 C 1.46849 * 111.00316 * 169.99529 * 12 11 9 27 27 C 1.38085 * 119.96429 * 180.25362 * 2 1 3 28 28 H 1.09009 * 109.46938 * 90.00169 * 1 2 3 29 29 H 1.08998 * 109.47102 * 210.00115 * 1 2 3 30 30 H 1.09004 * 109.46979 * 330.00590 * 1 2 3 31 31 H 1.08002 * 119.92473 * 359.94937 * 3 2 1 32 32 H 1.08005 * 119.96791 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47354 * 270.02841 * 6 5 4 34 34 H 1.09005 * 109.46713 * 30.02550 * 6 5 4 35 35 H 1.08997 * 109.47112 * 150.02163 * 6 5 4 36 36 H 0.96993 * 120.00320 * 335.43510 * 8 7 5 37 37 H 1.09000 * 109.47107 * 299.99467 * 11 9 8 38 38 H 1.08997 * 109.47352 * 59.99375 * 11 9 8 39 39 H 1.08999 * 109.45911 * 294.17703 * 13 12 11 40 40 H 1.09005 * 109.46087 * 54.14218 * 13 12 11 41 41 H 1.09002 * 109.50904 * 299.24115 * 14 13 12 42 42 H 1.09006 * 109.50424 * 179.12175 * 14 13 12 43 43 H 1.09006 * 109.52495 * 62.25027 * 15 14 13 44 44 H 1.09001 * 109.46198 * 54.71733 * 16 15 14 45 45 H 1.08995 * 109.46884 * 174.71465 * 16 15 14 46 46 H 0.96996 * 119.99532 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.50032 * 297.71070 * 25 15 14 48 48 H 1.09000 * 109.50539 * 177.59737 * 25 15 14 49 49 H 1.09001 * 109.45881 * 305.85990 * 26 12 11 50 50 H 1.08999 * 109.45930 * 65.83384 * 26 12 11 51 51 H 1.08001 * 120.03734 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.2762 0.0092 0.0005 6 6 5.7832 0.0147 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2875 -2.4059 0.0011 9 6 3.7070 -3.5213 0.4864 10 8 2.6165 -3.4572 1.0136 11 6 4.4128 -4.8480 0.3741 12 7 3.5791 -5.8985 0.9735 13 6 3.4355 -5.6946 2.4207 14 6 2.4473 -6.7175 2.9857 15 6 2.9631 -8.1304 2.6991 16 6 1.9509 -9.1588 3.2082 17 6 1.8594 -9.0726 4.7099 18 1 2.4630 -8.3564 5.2475 19 6 1.0049 -9.9082 5.3975 20 7 0.2695 -10.7800 4.7427 21 14 0.8909 -9.8009 7.2589 22 1 -0.1619 -8.8234 7.6349 23 1 0.5470 -11.1356 7.8115 24 1 2.1968 -9.3583 7.8102 25 6 3.1500 -8.3006 1.1889 26 6 4.1177 -7.2318 0.6760 27 6 2.1967 -1.1963 -0.0053 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6561 2.1325 -0.0008 32 1 4.1170 2.1398 0.0001 33 1 6.1465 0.0165 -1.0271 34 1 6.1432 0.9058 0.5148 35 1 6.1498 -0.8741 0.5140 36 1 5.1918 -2.4424 -0.3477 37 1 4.5882 -5.0784 -0.6768 38 1 5.3666 -4.7978 0.8991 39 1 4.4047 -5.8210 2.9031 40 1 3.0641 -4.6876 2.6105 41 1 1.4741 -6.5827 2.5136 42 1 2.3528 -6.5760 4.0624 43 1 3.9181 -8.2789 3.2033 44 1 0.9734 -8.9529 2.7721 45 1 2.2737 -10.1593 2.9206 46 1 -0.3313 -11.3680 5.2265 47 1 2.1878 -8.1906 0.6885 48 1 3.5575 -9.2901 0.9818 49 1 4.2419 -7.3412 -0.4014 50 1 5.0836 -7.3511 1.1668 51 1 1.6567 -2.1316 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570678838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:11 Heat of formation + Delta-G solvation = -22.851616 kcal Electronic energy + Delta-G solvation = -28086.482117 eV Core-core repulsion = 24370.752520 eV Total energy + Delta-G solvation = -3715.729597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94909 -39.27105 -38.07720 -35.38154 -34.42446 -33.51085 -32.28899 -30.39553 -30.28808 -29.54679 -28.57323 -26.27979 -25.07317 -23.74217 -22.89435 -22.61079 -21.07851 -20.66760 -20.40277 -18.88626 -17.51923 -17.12696 -16.18258 -15.99673 -15.80756 -15.40373 -15.23602 -14.57707 -14.42580 -14.41067 -14.16782 -13.84485 -13.52178 -13.41522 -13.24070 -13.12933 -12.93779 -12.76786 -12.53177 -12.19398 -12.08272 -11.88078 -11.79794 -11.62404 -11.58104 -11.37303 -11.08236 -10.75980 -10.61682 -10.58366 -10.52411 -10.25411 -10.00138 -9.71819 -9.42485 -8.95798 -8.83045 -8.72779 -8.27664 -8.19406 -8.10497 -5.92533 -3.93546 1.06544 1.22863 2.46694 2.71656 3.36359 3.42446 3.45406 3.58963 4.05805 4.41952 4.51918 4.58815 4.59898 4.86019 4.90900 5.00963 5.06238 5.09597 5.21570 5.25256 5.33093 5.37941 5.42903 5.46297 5.47616 5.53667 5.62554 5.66631 5.75493 5.77032 5.89617 5.94776 6.04432 6.09848 6.19451 6.23104 6.28876 6.34563 6.46802 6.51292 6.62848 6.71412 6.90476 7.01808 7.07534 7.19522 7.27478 7.32274 7.38358 7.75870 7.93211 7.98234 8.08684 8.51991 9.12964 9.69588 11.18901 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002359 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.368978 B =11864.704301 C =12702.009463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.097 4.097 5 C -0.130 4.130 6 C -0.112 4.112 7 C 0.158 3.842 8 N -0.676 5.676 9 C 0.510 3.490 10 O -0.487 6.487 11 C 0.038 3.962 12 N -0.519 5.519 13 C 0.051 3.949 14 C -0.096 4.096 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.111 4.111 26 C 0.061 3.939 27 C -0.129 4.129 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.030 0.970 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 23.096 -14.684 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.159 4.159 4 C -0.116 4.116 5 C -0.133 4.133 6 C -0.169 4.169 7 C 0.063 3.937 8 N -0.322 5.322 9 C 0.298 3.702 10 O -0.359 6.359 11 C -0.094 4.094 12 N -0.244 5.244 13 C -0.076 4.076 14 C -0.133 4.133 15 C -0.101 4.101 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.149 4.149 26 C -0.067 4.067 27 C -0.149 4.149 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.244 0.756 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.048 0.952 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.876 22.905 -14.467 28.836 hybrid contribution 1.233 -0.035 1.227 1.739 sum 11.109 22.870 -13.241 28.666 Atomic orbital electron populations 1.20802 0.90973 1.03085 1.02312 1.19838 0.96256 0.92572 0.98340 1.20971 0.94083 0.97508 1.03385 1.20760 0.94022 0.96727 1.00088 1.19567 0.95891 0.91835 1.05987 1.20698 0.91178 1.02919 1.02118 1.17596 0.91452 0.84573 1.00067 1.43644 1.18583 1.07291 1.62679 1.20929 0.86684 0.85228 0.77392 1.90695 1.20067 1.85469 1.39623 1.21924 0.95126 0.90041 1.02300 1.61684 1.48071 1.00801 1.13872 1.22392 0.98424 1.01624 0.85192 1.21493 0.98024 0.93242 1.00588 1.21259 0.99959 0.96193 0.92694 1.19112 0.93421 0.92857 0.95481 1.21258 1.22868 1.18666 0.92325 0.92746 1.25017 0.95849 0.95543 0.98120 1.69966 1.26200 1.22120 1.35331 0.86657 0.78317 0.77219 0.86181 1.20708 1.21341 1.19993 1.21684 0.99094 0.96202 0.97913 1.22149 0.96552 0.88254 0.99711 1.21346 0.92353 0.99515 1.01677 0.91176 0.91062 0.91563 0.86197 0.85924 0.91271 0.91150 0.91952 0.75582 0.87770 0.92066 0.96001 0.89927 0.91697 0.91005 0.93132 0.96481 0.96797 0.93141 0.91455 0.91974 0.91504 0.95205 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.07 -0.75 5.88 -104.65 -0.62 -1.37 16 3 C -0.14 -1.31 9.70 -39.55 -0.38 -1.70 16 4 C -0.10 -0.85 9.70 -39.61 -0.38 -1.23 16 5 C -0.13 -1.19 5.90 -104.43 -0.62 -1.81 16 6 C -0.11 -0.68 9.45 36.01 0.34 -0.34 16 7 C 0.16 1.75 6.41 -83.69 -0.54 1.21 16 8 N -0.68 -6.41 4.98 -9.86 -0.05 -6.46 16 9 C 0.51 6.24 7.31 -10.99 -0.08 6.16 16 10 O -0.49 -7.94 11.49 5.55 0.06 -7.88 16 11 C 0.04 0.40 5.45 -4.98 -0.03 0.38 16 12 N -0.52 -7.68 4.40 -236.11 -1.04 -8.72 16 13 C 0.05 0.85 5.11 -3.83 -0.02 0.83 16 14 C -0.10 -1.93 5.15 -26.65 -0.14 -2.06 16 15 C -0.08 -1.72 2.20 -90.50 -0.20 -1.92 16 16 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 17 C -0.51 -14.62 8.45 -34.44 -0.29 -14.91 16 18 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 26 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 27 C -0.13 -1.62 8.37 -39.39 -0.33 -1.95 16 28 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.06 0.35 6.98 -51.93 -0.36 -0.01 16 36 H 0.41 2.46 7.39 -40.82 -0.30 2.16 16 37 H 0.10 0.85 7.99 -51.93 -0.41 0.44 16 38 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 1.45 5.78 -51.93 -0.30 1.15 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.54 7.06 -51.93 -0.37 1.17 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 50 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.15 2.14 5.79 -52.49 -0.30 1.84 16 LS Contribution 399.14 15.07 6.02 6.02 Total: -1.00 -33.66 399.14 -11.32 -44.99 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.73 Total: 0.16 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.30 Total: -18.51 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.35 Total: -41.86 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.06 Total: -7.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.66 -11.32 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570678838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.136 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds