Wall clock time and date at job start Tue Mar 31 2020 15:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.96674 * 2 1 4 4 C 1.38252 * 120.14475 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06815 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.03604 * 179.97438 * 5 4 3 7 7 C 1.38853 * 119.93114 * 359.97438 * 5 4 3 8 8 N 1.39923 * 120.06992 * 180.02562 * 7 5 4 9 9 C 1.34778 * 119.99712 * 155.43452 * 8 7 5 10 10 O 1.21290 * 120.00212 * 354.47460 * 9 8 7 11 11 C 1.50700 * 119.99867 * 174.48123 * 9 8 7 12 12 N 1.46899 * 109.47255 * 179.97438 * 11 9 8 13 13 C 1.46850 * 110.99975 * 294.20752 * 12 11 9 14 14 C 1.53034 * 109.52237 * 174.15667 * 13 12 11 15 15 C 1.53118 * 109.27761 * 59.18016 * 14 13 12 16 16 C 1.53008 * 109.57692 * 182.40354 * 15 14 13 17 17 C 1.50700 * 109.47103 * 294.71748 * 16 15 14 18 18 H 1.07996 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99637 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99743 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47518 * 89.99875 * 21 19 17 23 23 H 1.48495 * 109.47170 * 209.99920 * 21 19 17 24 24 H 1.48504 * 109.47190 * 330.00091 * 21 19 17 25 25 C 1.53116 * 109.16284 * 302.34515 * 15 14 13 26 26 C 1.46849 * 111.00316 * 169.99529 * 12 11 9 27 27 C 1.38085 * 119.96429 * 180.25362 * 2 1 3 28 28 H 1.09009 * 109.46938 * 90.00169 * 1 2 3 29 29 H 1.08998 * 109.47102 * 210.00115 * 1 2 3 30 30 H 1.09004 * 109.46979 * 330.00590 * 1 2 3 31 31 H 1.08002 * 119.92473 * 359.94937 * 3 2 1 32 32 H 1.08005 * 119.96791 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47354 * 270.02841 * 6 5 4 34 34 H 1.09005 * 109.46713 * 30.02550 * 6 5 4 35 35 H 1.08997 * 109.47112 * 150.02163 * 6 5 4 36 36 H 0.96993 * 120.00320 * 335.43510 * 8 7 5 37 37 H 1.09000 * 109.47107 * 299.99467 * 11 9 8 38 38 H 1.08997 * 109.47352 * 59.99375 * 11 9 8 39 39 H 1.08999 * 109.45911 * 294.17703 * 13 12 11 40 40 H 1.09005 * 109.46087 * 54.14218 * 13 12 11 41 41 H 1.09002 * 109.50904 * 299.24115 * 14 13 12 42 42 H 1.09006 * 109.50424 * 179.12175 * 14 13 12 43 43 H 1.09006 * 109.52495 * 62.25027 * 15 14 13 44 44 H 1.09001 * 109.46198 * 54.71733 * 16 15 14 45 45 H 1.08995 * 109.46884 * 174.71465 * 16 15 14 46 46 H 0.96996 * 119.99532 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.50032 * 297.71070 * 25 15 14 48 48 H 1.09000 * 109.50539 * 177.59737 * 25 15 14 49 49 H 1.09001 * 109.45881 * 305.85990 * 26 12 11 50 50 H 1.08999 * 109.45930 * 65.83384 * 26 12 11 51 51 H 1.08001 * 120.03734 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.2762 0.0092 0.0005 6 6 5.7832 0.0147 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2875 -2.4059 0.0011 9 6 3.7070 -3.5213 0.4864 10 8 2.6165 -3.4572 1.0136 11 6 4.4128 -4.8480 0.3741 12 7 3.5791 -5.8985 0.9735 13 6 3.4355 -5.6946 2.4207 14 6 2.4473 -6.7175 2.9857 15 6 2.9631 -8.1304 2.6991 16 6 1.9509 -9.1588 3.2082 17 6 1.8594 -9.0726 4.7099 18 1 2.4630 -8.3564 5.2475 19 6 1.0049 -9.9082 5.3975 20 7 0.2695 -10.7800 4.7427 21 14 0.8909 -9.8009 7.2589 22 1 -0.1619 -8.8234 7.6349 23 1 0.5470 -11.1356 7.8115 24 1 2.1968 -9.3583 7.8102 25 6 3.1500 -8.3006 1.1889 26 6 4.1177 -7.2318 0.6760 27 6 2.1967 -1.1963 -0.0053 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6561 2.1325 -0.0008 32 1 4.1170 2.1398 0.0001 33 1 6.1465 0.0165 -1.0271 34 1 6.1432 0.9058 0.5148 35 1 6.1498 -0.8741 0.5140 36 1 5.1918 -2.4424 -0.3477 37 1 4.5882 -5.0784 -0.6768 38 1 5.3666 -4.7978 0.8991 39 1 4.4047 -5.8210 2.9031 40 1 3.0641 -4.6876 2.6105 41 1 1.4741 -6.5827 2.5136 42 1 2.3528 -6.5760 4.0624 43 1 3.9181 -8.2789 3.2033 44 1 0.9734 -8.9529 2.7721 45 1 2.2737 -10.1593 2.9206 46 1 -0.3313 -11.3680 5.2265 47 1 2.1878 -8.1906 0.6885 48 1 3.5575 -9.2901 0.9818 49 1 4.2419 -7.3412 -0.4014 50 1 5.0836 -7.3511 1.1668 51 1 1.6567 -2.1316 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570678838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:11 Heat of formation + Delta-G solvation = -43.132701 kcal Electronic energy + Delta-G solvation = -28087.361571 eV Core-core repulsion = 24370.752520 eV Total energy + Delta-G solvation = -3716.609051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80371 -40.27946 -39.23536 -36.28797 -36.00806 -34.27100 -34.20722 -31.71039 -31.34102 -30.22076 -29.98587 -27.73957 -25.80483 -25.30681 -24.04631 -23.85079 -22.36003 -21.68659 -21.33068 -20.45920 -18.48086 -18.31153 -17.96287 -16.87411 -16.76079 -16.53059 -16.34739 -16.13990 -15.54966 -15.42195 -15.08409 -14.89520 -14.76795 -14.64381 -14.19594 -14.12991 -14.09480 -13.81353 -13.63254 -13.47358 -13.32490 -13.00214 -12.93621 -12.79738 -12.61811 -12.59330 -12.37672 -12.32056 -12.17823 -12.08902 -12.01070 -11.69627 -11.37288 -11.26857 -11.04951 -10.72813 -10.58285 -10.46530 -9.49860 -9.22682 -8.91491 -8.18366 -6.27836 0.31174 0.46012 1.37231 1.39102 1.49555 1.61019 1.92049 2.40488 2.84340 2.99239 3.14525 3.62878 3.92749 3.95480 4.00176 4.05361 4.10275 4.16573 4.30054 4.32610 4.35714 4.39432 4.41776 4.56831 4.59337 4.68533 4.76217 4.77023 4.78335 4.82605 4.84040 4.86773 4.94621 5.01280 5.09004 5.13636 5.14416 5.29535 5.38139 5.38997 5.42637 5.43622 5.48482 5.56927 5.59337 5.74520 5.80124 5.87971 6.06095 6.14807 6.16028 6.29444 6.48596 6.88168 7.16482 7.40182 8.93665 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002359 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.368978 B =11864.704301 C =12702.009463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.111 4.111 7 C 0.138 3.862 8 N -0.659 5.659 9 C 0.507 3.493 10 O -0.538 6.538 11 C 0.041 3.959 12 N -0.541 5.541 13 C 0.067 3.933 14 C -0.090 4.090 15 C -0.074 4.074 16 C 0.034 3.966 17 C -0.530 4.530 18 H 0.058 0.942 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.262 1.262 25 C -0.109 4.109 26 C 0.069 3.931 27 C -0.157 4.157 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.426 0.574 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.053 0.947 44 H -0.018 1.018 45 H -0.010 1.010 46 H 0.262 0.738 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.047 0.953 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.515 25.377 -15.244 32.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.162 4.162 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.168 4.168 7 C 0.043 3.957 8 N -0.306 5.306 9 C 0.295 3.705 10 O -0.414 6.414 11 C -0.089 4.089 12 N -0.267 5.267 13 C -0.060 4.060 14 C -0.128 4.128 15 C -0.092 4.092 16 C -0.003 4.003 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.186 1.186 25 C -0.147 4.147 26 C -0.057 4.057 27 C -0.178 4.178 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.266 0.734 37 H 0.157 0.843 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.001 0.999 45 H 0.009 0.991 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.065 0.935 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.188 25.210 -15.060 32.191 hybrid contribution 0.182 -0.696 1.345 1.525 sum 13.369 24.515 -13.714 31.109 Atomic orbital electron populations 1.20804 0.90398 1.02907 1.02872 1.20072 0.97040 0.92844 0.98938 1.21276 0.94801 0.97610 1.02484 1.21190 0.93952 0.97862 0.98820 1.19957 0.97718 0.91063 1.04410 1.20782 0.88660 1.03811 1.03542 1.17775 0.91145 0.85797 1.00941 1.43441 1.19096 1.06282 1.61742 1.21325 0.86111 0.86363 0.76689 1.90700 1.22341 1.86204 1.42108 1.22050 0.95017 0.87586 1.04240 1.61505 1.50456 1.02366 1.12337 1.22068 0.97591 0.99397 0.86992 1.21344 0.97992 0.94236 0.99238 1.21096 0.98058 0.94729 0.95349 1.19007 0.93252 0.93306 0.94772 1.21652 1.22930 1.18613 0.93587 0.92351 1.25970 0.95405 0.95103 1.03587 1.70105 1.26970 1.23014 1.37505 0.85517 0.78827 0.77473 0.79675 1.20161 1.20616 1.18636 1.21611 0.99637 0.98475 0.94927 1.22086 0.95568 0.86369 1.01717 1.21278 0.93528 0.98995 1.03965 0.90254 0.92948 0.89941 0.84013 0.83010 0.89438 0.89944 0.91428 0.73426 0.84342 0.88992 0.94621 0.90956 0.94452 0.93179 0.92827 0.99929 0.99140 0.92931 0.93268 0.91189 0.88111 0.93510 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.42 16 2 C -0.09 -1.96 5.88 -19.88 -0.12 -2.07 16 3 C -0.14 -2.47 9.70 22.29 0.22 -2.25 16 4 C -0.10 -1.49 9.70 22.25 0.22 -1.28 16 5 C -0.13 -2.07 5.90 -19.74 -0.12 -2.19 16 6 C -0.11 -0.95 9.45 71.24 0.67 -0.28 16 7 C 0.14 2.96 6.41 38.15 0.24 3.21 16 8 N -0.66 -11.42 4.98 -303.50 -1.51 -12.93 16 9 C 0.51 11.91 7.31 87.66 0.64 12.55 16 10 O -0.54 -18.27 11.49 -3.06 -0.04 -18.31 16 11 C 0.04 0.76 5.45 85.56 0.47 1.23 16 12 N -0.54 -15.13 4.40 -900.93 -3.96 -19.09 16 13 C 0.07 2.23 5.11 86.32 0.44 2.67 16 14 C -0.09 -3.79 5.15 30.65 0.16 -3.63 16 15 C -0.07 -3.17 2.20 -10.71 -0.02 -3.19 16 16 C 0.03 1.86 4.45 29.85 0.13 1.99 16 17 C -0.53 -31.22 8.45 25.60 0.22 -31.00 16 18 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -59.09 13.29 21.45 0.28 -58.80 16 21 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.11 -3.78 5.38 30.64 0.16 -3.61 16 26 C 0.07 1.76 5.46 86.32 0.47 2.23 16 27 C -0.16 -4.14 8.37 22.39 0.19 -3.95 16 28 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 30 H 0.08 1.23 8.09 -2.38 -0.02 1.21 16 31 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.54 8.09 -2.38 -0.02 0.52 16 35 H 0.07 0.52 6.98 -2.39 -0.02 0.50 16 36 H 0.43 3.84 7.39 -92.71 -0.69 3.15 16 37 H 0.14 1.62 7.99 -2.39 -0.02 1.60 16 38 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 2.59 5.78 -2.38 -0.01 2.58 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 2.26 7.06 -2.38 -0.02 2.24 16 43 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 44 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.10 1.94 8.02 -2.39 -0.02 1.92 16 50 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.12 3.77 5.79 -2.91 -0.02 3.76 16 Total: -1.00 -78.70 399.14 2.17 -76.53 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.22 Total: 15.25 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 5.15 Total: -30.74 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -5.19 Total: -90.82 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.04 Total: -18.31 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -78.70 2.17 -76.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570678838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.398 kcal (2) G-P(sol) polarization free energy of solvation -78.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds