Wall clock time and date at job start Tue Mar 31 2020 16:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00229 * 2 1 4 4 C 1.53238 * 109.34207 * 187.25081 * 3 2 1 5 5 N 1.47080 * 108.52442 * 306.17112 * 4 3 2 6 6 C 1.34773 * 120.88225 * 231.16171 * 5 4 3 7 7 O 1.21277 * 119.99959 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.00052 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.47223 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46965 * 54.99597 * 9 8 6 11 11 C 1.50706 * 109.47168 * 295.00119 * 9 8 6 12 12 H 1.07997 * 120.00128 * 121.36108 * 11 9 8 13 13 C 1.37876 * 119.99570 * 301.36653 * 11 9 8 14 14 N 1.31509 * 120.00503 * 6.17482 * 13 11 9 15 15 Si 1.86802 * 119.99946 * 186.17011 * 13 11 9 16 16 H 1.48503 * 109.46892 * 90.00014 * 15 13 11 17 17 H 1.48492 * 109.47304 * 210.00119 * 15 13 11 18 18 H 1.48501 * 109.47050 * 330.00507 * 15 13 11 19 19 C 1.50691 * 109.47328 * 175.00078 * 9 8 6 20 20 C 1.38239 * 120.00143 * 211.37261 * 19 9 8 21 21 C 1.38235 * 119.99791 * 179.80942 * 20 19 9 22 22 C 1.38233 * 120.00306 * 0.39198 * 21 20 19 23 23 C 1.38235 * 119.99602 * 359.85856 * 22 21 20 24 24 C 1.38224 * 120.00414 * 359.95655 * 23 22 21 25 25 C 1.47084 * 118.23625 * 51.17926 * 5 4 3 26 26 C 1.46904 * 110.99990 * 124.30034 * 2 1 3 27 27 C 1.53000 * 109.49424 * 292.70584 * 26 2 1 28 28 C 1.53002 * 109.49320 * 52.78650 * 26 2 1 29 29 H 1.09004 * 109.47236 * 295.69950 * 1 2 3 30 30 H 1.08999 * 109.47125 * 55.69763 * 1 2 3 31 31 H 1.08997 * 109.47634 * 175.70063 * 1 2 3 32 32 H 1.08999 * 109.49182 * 307.21329 * 3 2 1 33 33 H 1.09004 * 109.49695 * 67.26363 * 3 2 1 34 34 H 1.09008 * 109.62510 * 65.87845 * 4 3 2 35 35 H 1.09001 * 109.63245 * 186.45721 * 4 3 2 36 36 H 1.08998 * 109.46697 * 300.00340 * 8 6 5 37 37 H 1.09001 * 109.47045 * 59.99849 * 8 6 5 38 38 H 0.96998 * 120.00341 * 179.97438 * 14 13 11 39 39 H 1.07998 * 119.99727 * 359.97438 * 20 19 9 40 40 H 1.08000 * 119.99878 * 180.22726 * 21 20 19 41 41 H 1.07997 * 120.00161 * 179.83466 * 22 21 20 42 42 H 1.08003 * 119.99673 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00625 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.62995 * 189.10581 * 25 5 4 45 45 H 1.09005 * 109.62674 * 68.52629 * 25 5 4 46 46 H 1.09009 * 109.46984 * 59.99549 * 27 26 2 47 47 H 1.09000 * 109.47254 * 179.97438 * 27 26 2 48 48 H 1.09002 * 109.46696 * 300.00249 * 27 26 2 49 49 H 1.08996 * 109.46852 * 59.99753 * 28 26 2 50 50 H 1.08998 * 109.47389 * 180.02562 * 28 26 2 51 51 H 1.09008 * 109.46536 * 300.00108 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0870 0.4460 0.8442 6 6 5.1058 0.8581 1.6243 7 8 5.5638 0.1151 2.4663 8 6 5.6761 2.2422 1.4502 9 6 6.8135 2.4548 2.4510 10 1 7.5528 1.6623 2.3346 11 6 6.2614 2.4245 3.8529 12 1 6.6310 1.7000 4.5634 13 6 5.2842 3.3218 4.2284 14 7 4.7474 4.1222 3.3336 15 14 4.7224 3.4004 6.0082 16 1 5.5575 4.3806 6.7480 17 1 3.2999 3.8232 6.0601 18 1 4.8636 2.0600 6.6315 19 6 7.4640 3.7900 2.1961 20 6 8.8111 3.9630 2.4537 21 6 9.4085 5.1868 2.2161 22 6 8.6573 6.2397 1.7286 23 6 7.3091 6.0681 1.4759 24 6 6.7124 4.8434 1.7098 25 6 3.5163 -0.9011 0.9969 26 6 1.9954 -0.7729 1.1330 27 6 1.6586 -0.0548 2.4413 28 6 1.3640 -2.1665 1.1377 29 1 -0.3634 0.4457 0.9260 30 1 -0.3633 0.5791 -0.8489 31 1 -0.3634 -1.0247 -0.0770 32 1 1.5456 1.9336 -0.8183 33 1 1.7551 1.8534 0.9477 34 1 3.7562 0.9449 -1.1732 35 1 3.9256 2.3350 -0.0689 36 1 6.0597 2.3520 0.4358 37 1 4.8946 2.9817 1.6251 38 1 4.0597 4.7532 3.5977 39 1 9.3972 3.1414 2.8381 40 1 10.4618 5.3209 2.4139 41 1 9.1235 7.1965 1.5455 42 1 6.7220 6.8909 1.0954 43 1 5.6590 4.7094 1.5128 44 1 3.9254 -1.3730 1.8902 45 1 3.7561 -1.5018 0.1195 46 1 0.5767 0.0384 2.5366 47 1 2.0490 -0.6287 3.2817 48 1 2.1098 0.9375 2.4377 49 1 1.6054 -2.6778 0.2058 50 1 1.7545 -2.7395 1.9786 51 1 0.2819 -2.0748 1.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572540806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:51 Heat of formation + Delta-G solvation = 9.715211 kcal Electronic energy + Delta-G solvation = -30276.383369 eV Core-core repulsion = 26562.065975 eV Total energy + Delta-G solvation = -3714.317394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.17381 -38.52956 -37.69824 -34.44310 -34.17467 -32.92324 -31.06889 -29.83183 -28.90775 -28.56216 -27.24304 -26.95403 -25.53857 -24.01894 -22.60437 -22.38908 -21.38809 -19.91292 -18.73598 -17.94905 -16.64904 -16.23900 -15.89921 -15.55764 -15.20957 -15.02524 -14.68063 -14.48305 -14.40536 -13.84857 -13.73811 -13.52317 -13.24595 -12.89085 -12.74977 -12.32430 -12.25437 -12.15639 -11.91186 -11.86233 -11.76105 -11.53624 -11.43933 -11.22482 -11.19666 -11.03183 -10.92726 -10.82037 -10.74338 -10.56208 -10.35229 -10.18018 -9.95319 -9.29715 -9.18780 -8.64932 -8.41883 -8.37792 -7.89861 -7.80579 -7.44404 -6.00362 -4.07365 2.48122 2.56946 3.29069 3.35517 3.41757 3.58111 3.71014 3.98461 4.42272 4.81710 4.96403 4.99074 5.03194 5.17497 5.23849 5.32669 5.40486 5.53763 5.57834 5.59628 5.67838 5.74018 5.80349 5.81164 5.84797 5.90393 5.92971 5.99935 6.01362 6.11333 6.12402 6.16883 6.23041 6.39821 6.46083 6.50545 6.61762 6.71739 6.77753 7.01778 7.08426 7.13829 7.14652 7.23862 7.28404 7.48485 7.54037 7.69651 7.95811 8.07631 8.18618 8.21885 8.35958 8.89847 9.23107 9.55750 10.94293 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004176 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.324653 B = 6703.152156 C = 7368.058422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.035 3.965 4 C 0.119 3.881 5 N -0.628 5.628 6 C 0.529 3.471 7 O -0.529 6.529 8 C -0.137 4.137 9 C 0.087 3.913 10 H 0.036 0.964 11 C -0.467 4.467 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.030 4.030 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.075 4.075 25 C 0.131 3.869 26 C 0.092 3.908 27 C -0.176 4.176 28 C -0.139 4.139 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.137 0.863 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -4.139 -9.084 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.094 4.094 4 C -0.005 4.005 5 N -0.364 5.364 6 C 0.320 3.680 7 O -0.403 6.403 8 C -0.177 4.177 9 C 0.068 3.932 10 H 0.054 0.946 11 C -0.504 4.504 12 H 0.078 0.922 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.031 4.031 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.094 4.094 25 C 0.007 3.993 26 C 0.002 3.998 27 C -0.235 4.235 28 C -0.197 4.197 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.165 0.835 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.528 -4.633 -9.016 12.057 hybrid contribution -0.804 0.794 1.891 2.203 sum -7.332 -3.839 -7.124 10.920 Atomic orbital electron populations 1.22433 0.88009 1.02083 1.00329 1.62212 1.07291 1.13615 1.42347 1.22559 0.95926 0.89429 1.01464 1.21681 0.91838 0.95587 0.91437 1.48274 1.36149 1.14497 1.37492 1.21166 0.78050 0.89831 0.78960 1.90592 1.59907 1.56435 1.33403 1.22015 1.03764 0.93714 0.98243 1.17645 0.91870 0.89247 0.94418 0.94586 1.21006 1.18640 1.14747 0.96012 0.92225 1.24837 0.96200 0.95509 0.97252 1.69526 1.27656 1.23494 1.32376 0.86613 0.77551 0.78309 0.85793 1.20778 1.21473 1.20000 1.20363 0.91941 0.98237 0.92552 1.20932 0.95468 0.96771 1.01832 1.20802 0.98578 0.93984 1.02693 1.20782 0.94868 0.97847 1.03685 1.21081 0.94507 0.97964 1.02693 1.21605 1.00698 0.91312 0.95772 1.21499 0.90226 0.85226 1.02317 1.21435 0.95497 0.93862 0.89010 1.22384 1.00655 1.02537 0.97924 1.21879 1.00400 0.95101 1.02322 0.95495 0.91717 0.91165 0.90136 0.93376 0.91677 0.88768 0.93260 0.84563 0.92962 0.87642 0.88081 0.88300 0.88077 0.83469 0.89118 0.92005 0.93147 0.91968 0.91255 0.91776 0.91964 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.76 60.06 0.53 0.73 16 2 N -0.53 -6.58 4.68 -226.87 -1.06 -7.65 16 3 C 0.03 0.45 5.25 -3.70 -0.02 0.43 16 4 C 0.12 1.69 6.50 -3.60 -0.02 1.66 16 5 N -0.63 -10.85 2.48 -172.45 -0.43 -11.28 16 6 C 0.53 11.32 7.46 -10.98 -0.08 11.24 16 7 O -0.53 -13.18 14.44 5.56 0.08 -13.10 16 8 C -0.14 -2.93 2.59 -27.88 -0.07 -3.00 16 9 C 0.09 2.09 1.98 -92.93 -0.18 1.91 16 10 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 11 C -0.47 -12.45 7.27 -34.44 -0.25 -12.70 16 12 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 13 C 0.06 1.59 5.14 -17.82 -0.09 1.50 16 14 N -0.89 -22.17 7.74 55.43 0.43 -21.74 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.03 -0.69 4.68 -104.63 -0.49 -1.18 16 20 C -0.13 -2.81 9.70 -39.58 -0.38 -3.19 16 21 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 22 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 24 C -0.08 -1.64 7.56 -39.59 -0.30 -1.94 16 25 C 0.13 2.04 5.27 -3.60 -0.02 2.02 16 26 C 0.09 1.23 0.69 -131.48 -0.09 1.14 16 27 C -0.18 -2.65 7.68 37.16 0.29 -2.37 16 28 C -0.14 -1.50 8.00 37.16 0.30 -1.20 16 29 H 0.03 0.29 6.52 -51.93 -0.34 -0.05 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 32 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.05 0.72 6.10 -51.93 -0.32 0.40 16 34 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.09 1.36 6.02 -51.93 -0.31 1.05 16 36 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 37 H 0.14 3.05 4.17 -51.93 -0.22 2.83 16 38 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 39 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.15 3.27 4.97 -52.48 -0.26 3.01 16 44 H 0.09 1.58 7.06 -51.93 -0.37 1.22 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.68 6.59 -51.92 -0.34 0.33 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.24 5.93 -51.93 -0.31 0.94 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.57 6.32 -51.92 -0.33 0.24 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -28.48 379.83 -10.49 -38.97 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.13 Total: 7.28 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.09 Total: -14.59 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -1.06 Total: -40.67 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.48 -10.49 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.685 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds