Wall clock time and date at job start Tue Mar 31 2020 16:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00229 * 2 1 4 4 C 1.53238 * 109.34207 * 187.25081 * 3 2 1 5 5 N 1.47080 * 108.52442 * 306.17112 * 4 3 2 6 6 C 1.34773 * 120.88225 * 231.16171 * 5 4 3 7 7 O 1.21277 * 119.99959 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.00052 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.47223 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46965 * 54.99597 * 9 8 6 11 11 C 1.50706 * 109.47168 * 295.00119 * 9 8 6 12 12 H 1.07997 * 120.00128 * 121.36108 * 11 9 8 13 13 C 1.37876 * 119.99570 * 301.36653 * 11 9 8 14 14 N 1.31509 * 120.00503 * 6.17482 * 13 11 9 15 15 Si 1.86802 * 119.99946 * 186.17011 * 13 11 9 16 16 H 1.48503 * 109.46892 * 90.00014 * 15 13 11 17 17 H 1.48492 * 109.47304 * 210.00119 * 15 13 11 18 18 H 1.48501 * 109.47050 * 330.00507 * 15 13 11 19 19 C 1.50691 * 109.47328 * 175.00078 * 9 8 6 20 20 C 1.38239 * 120.00143 * 211.37261 * 19 9 8 21 21 C 1.38235 * 119.99791 * 179.80942 * 20 19 9 22 22 C 1.38233 * 120.00306 * 0.39198 * 21 20 19 23 23 C 1.38235 * 119.99602 * 359.85856 * 22 21 20 24 24 C 1.38224 * 120.00414 * 359.95655 * 23 22 21 25 25 C 1.47084 * 118.23625 * 51.17926 * 5 4 3 26 26 C 1.46904 * 110.99990 * 124.30034 * 2 1 3 27 27 C 1.53000 * 109.49424 * 292.70584 * 26 2 1 28 28 C 1.53002 * 109.49320 * 52.78650 * 26 2 1 29 29 H 1.09004 * 109.47236 * 295.69950 * 1 2 3 30 30 H 1.08999 * 109.47125 * 55.69763 * 1 2 3 31 31 H 1.08997 * 109.47634 * 175.70063 * 1 2 3 32 32 H 1.08999 * 109.49182 * 307.21329 * 3 2 1 33 33 H 1.09004 * 109.49695 * 67.26363 * 3 2 1 34 34 H 1.09008 * 109.62510 * 65.87845 * 4 3 2 35 35 H 1.09001 * 109.63245 * 186.45721 * 4 3 2 36 36 H 1.08998 * 109.46697 * 300.00340 * 8 6 5 37 37 H 1.09001 * 109.47045 * 59.99849 * 8 6 5 38 38 H 0.96998 * 120.00341 * 179.97438 * 14 13 11 39 39 H 1.07998 * 119.99727 * 359.97438 * 20 19 9 40 40 H 1.08000 * 119.99878 * 180.22726 * 21 20 19 41 41 H 1.07997 * 120.00161 * 179.83466 * 22 21 20 42 42 H 1.08003 * 119.99673 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00625 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.62995 * 189.10581 * 25 5 4 45 45 H 1.09005 * 109.62674 * 68.52629 * 25 5 4 46 46 H 1.09009 * 109.46984 * 59.99549 * 27 26 2 47 47 H 1.09000 * 109.47254 * 179.97438 * 27 26 2 48 48 H 1.09002 * 109.46696 * 300.00249 * 27 26 2 49 49 H 1.08996 * 109.46852 * 59.99753 * 28 26 2 50 50 H 1.08998 * 109.47389 * 180.02562 * 28 26 2 51 51 H 1.09008 * 109.46536 * 300.00108 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0870 0.4460 0.8442 6 6 5.1058 0.8581 1.6243 7 8 5.5638 0.1151 2.4663 8 6 5.6761 2.2422 1.4502 9 6 6.8135 2.4548 2.4510 10 1 7.5528 1.6623 2.3346 11 6 6.2614 2.4245 3.8529 12 1 6.6310 1.7000 4.5634 13 6 5.2842 3.3218 4.2284 14 7 4.7474 4.1222 3.3336 15 14 4.7224 3.4004 6.0082 16 1 5.5575 4.3806 6.7480 17 1 3.2999 3.8232 6.0601 18 1 4.8636 2.0600 6.6315 19 6 7.4640 3.7900 2.1961 20 6 8.8111 3.9630 2.4537 21 6 9.4085 5.1868 2.2161 22 6 8.6573 6.2397 1.7286 23 6 7.3091 6.0681 1.4759 24 6 6.7124 4.8434 1.7098 25 6 3.5163 -0.9011 0.9969 26 6 1.9954 -0.7729 1.1330 27 6 1.6586 -0.0548 2.4413 28 6 1.3640 -2.1665 1.1377 29 1 -0.3634 0.4457 0.9260 30 1 -0.3633 0.5791 -0.8489 31 1 -0.3634 -1.0247 -0.0770 32 1 1.5456 1.9336 -0.8183 33 1 1.7551 1.8534 0.9477 34 1 3.7562 0.9449 -1.1732 35 1 3.9256 2.3350 -0.0689 36 1 6.0597 2.3520 0.4358 37 1 4.8946 2.9817 1.6251 38 1 4.0597 4.7532 3.5977 39 1 9.3972 3.1414 2.8381 40 1 10.4618 5.3209 2.4139 41 1 9.1235 7.1965 1.5455 42 1 6.7220 6.8909 1.0954 43 1 5.6590 4.7094 1.5128 44 1 3.9254 -1.3730 1.8902 45 1 3.7561 -1.5018 0.1195 46 1 0.5767 0.0384 2.5366 47 1 2.0490 -0.6287 3.2817 48 1 2.1098 0.9375 2.4377 49 1 1.6054 -2.6778 0.2058 50 1 1.7545 -2.7395 1.9786 51 1 0.2819 -2.0748 1.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572540806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:50 Heat of formation + Delta-G solvation = -5.075975 kcal Electronic energy + Delta-G solvation = -30277.024763 eV Core-core repulsion = 26562.065975 eV Total energy + Delta-G solvation = -3714.958788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47839 -40.08875 -39.23083 -36.10742 -35.70856 -34.02711 -32.94900 -31.42024 -30.36114 -29.82844 -28.49301 -28.30192 -27.09849 -25.26682 -24.09667 -23.71827 -22.96396 -21.54118 -20.17823 -19.21518 -18.32372 -17.99179 -17.20732 -16.98090 -16.90168 -16.40787 -16.23614 -15.70056 -15.46848 -15.42828 -15.32692 -15.01823 -14.58779 -14.42995 -14.13165 -13.79295 -13.64364 -13.44449 -13.26069 -13.15102 -13.09719 -13.01911 -12.85955 -12.79603 -12.68529 -12.57523 -12.25728 -12.20877 -12.11713 -11.94876 -11.85921 -11.75180 -11.65556 -11.08389 -11.04374 -10.51303 -10.25912 -9.59758 -9.40704 -9.13895 -9.11653 -7.97920 -6.10663 0.87333 0.98759 1.32096 1.34950 1.43542 2.02662 2.23339 2.42390 2.93278 3.17989 3.35905 3.67157 3.89109 3.93765 4.08755 4.16939 4.32415 4.34332 4.35486 4.41044 4.50874 4.52368 4.60611 4.66728 4.69535 4.70404 4.74287 4.79619 4.81891 4.83952 4.90896 4.92614 4.98837 5.01847 5.08049 5.08530 5.14461 5.22147 5.34655 5.37159 5.52634 5.62939 5.67757 5.75969 5.91367 5.94494 6.08410 6.09907 6.12809 6.37346 6.41691 6.57243 6.67216 6.83312 7.50628 7.58804 8.91901 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004176 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.324653 B = 6703.152156 C = 7368.058422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.040 3.960 4 C 0.113 3.887 5 N -0.622 5.622 6 C 0.522 3.478 7 O -0.577 6.577 8 C -0.124 4.124 9 C 0.089 3.911 10 H 0.010 0.990 11 C -0.489 4.489 12 H 0.025 0.975 13 C 0.038 3.962 14 N -0.881 5.881 15 Si 0.925 3.075 16 H -0.280 1.280 17 H -0.278 1.278 18 H -0.290 1.290 19 C -0.054 4.054 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.087 4.087 25 C 0.127 3.873 26 C 0.098 3.902 27 C -0.170 4.170 28 C -0.133 4.133 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.262 0.738 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.138 0.862 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.035 0.965 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 -2.722 -11.179 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.252 5.252 3 C -0.089 4.089 4 C -0.010 4.010 5 N -0.356 5.356 6 C 0.313 3.687 7 O -0.456 6.456 8 C -0.163 4.163 9 C 0.070 3.930 10 H 0.028 0.972 11 C -0.527 4.527 12 H 0.043 0.957 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.753 3.247 16 H -0.206 1.206 17 H -0.203 1.203 18 H -0.216 1.216 19 C -0.054 4.054 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.166 4.166 23 C -0.165 4.165 24 C -0.106 4.106 25 C 0.004 3.996 26 C 0.007 3.993 27 C -0.229 4.229 28 C -0.191 4.191 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.883 -3.198 -11.161 14.034 hybrid contribution -0.371 0.374 2.491 2.546 sum -8.255 -2.823 -8.670 12.300 Atomic orbital electron populations 1.22536 0.86134 1.03436 1.00768 1.62251 1.08865 1.12906 1.41171 1.22528 0.94893 0.90067 1.01416 1.21929 0.92864 0.94881 0.91300 1.48259 1.34798 1.15584 1.36961 1.21221 0.78867 0.89617 0.78978 1.90565 1.61820 1.57549 1.35648 1.21803 1.02564 0.93579 0.98402 1.17529 0.92054 0.89639 0.93827 0.97171 1.20913 1.20012 1.14810 0.96958 0.95707 1.25153 0.96200 0.95539 0.99245 1.69605 1.27150 1.22938 1.32331 0.86072 0.77754 0.77309 0.83540 1.20590 1.20307 1.21644 1.20305 0.92903 0.97758 0.94475 1.21108 0.95221 0.98119 1.02621 1.21158 1.00219 0.92981 1.01435 1.21218 0.94416 0.99114 1.01803 1.21396 0.95445 0.97667 1.01979 1.21537 1.00306 0.92109 0.96629 1.21635 0.91904 0.84223 1.01802 1.21366 0.93938 0.95524 0.88447 1.22327 1.01377 1.00523 0.98634 1.21843 1.01161 0.93104 1.02974 0.96103 0.89997 0.89602 0.87206 0.95687 0.89409 0.89240 0.91421 0.85301 0.92800 0.87947 0.84983 0.84553 0.85473 0.84436 0.91790 0.90307 0.91329 0.93613 0.94633 0.90574 0.92082 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.76 127.69 1.12 1.44 16 2 N -0.53 -11.88 4.68 -871.68 -4.08 -15.95 16 3 C 0.04 0.96 5.25 86.38 0.45 1.41 16 4 C 0.11 3.11 6.50 86.35 0.56 3.67 16 5 N -0.62 -21.98 2.48 -817.92 -2.03 -24.01 16 6 C 0.52 23.55 7.46 87.66 0.65 24.20 16 7 O -0.58 -30.93 14.44 -3.02 -0.04 -30.97 16 8 C -0.12 -5.50 2.59 29.85 0.08 -5.42 16 9 C 0.09 4.50 1.98 -12.29 -0.02 4.47 16 10 H 0.01 0.53 7.89 -2.39 -0.02 0.51 16 11 C -0.49 -27.69 7.27 25.60 0.19 -27.50 16 12 H 0.02 1.52 7.82 -2.91 -0.02 1.50 16 13 C 0.04 2.04 5.14 84.66 0.44 2.48 16 14 N -0.88 -44.51 7.74 21.45 0.17 -44.35 16 15 Si 0.92 44.93 29.54 68.60 2.03 46.96 16 16 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 19 C -0.05 -2.50 4.68 -19.87 -0.09 -2.60 16 20 C -0.15 -6.54 9.70 22.27 0.22 -6.33 16 21 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 22 C -0.15 -5.02 10.05 22.27 0.22 -4.80 16 23 C -0.15 -5.43 10.05 22.27 0.22 -5.20 16 24 C -0.09 -3.76 7.56 22.27 0.17 -3.60 16 25 C 0.13 4.02 5.27 86.35 0.46 4.47 16 26 C 0.10 2.52 0.69 3.61 0.00 2.52 16 27 C -0.17 -5.19 7.68 71.98 0.55 -4.63 16 28 C -0.13 -2.60 8.00 71.98 0.58 -2.02 16 29 H 0.02 0.39 6.52 -2.39 -0.02 0.38 16 30 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.09 1.25 6.20 -2.39 -0.01 1.23 16 32 H 0.11 2.04 8.06 -2.39 -0.02 2.03 16 33 H 0.02 0.73 6.10 -2.38 -0.01 0.72 16 34 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.09 2.55 6.02 -2.39 -0.01 2.54 16 36 H 0.07 2.68 8.00 -2.39 -0.02 2.66 16 37 H 0.13 5.96 4.17 -2.39 -0.01 5.95 16 38 H 0.26 12.80 8.31 -92.71 -0.77 12.03 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.14 6.13 4.97 -2.91 -0.01 6.11 16 44 H 0.06 2.37 7.06 -2.39 -0.02 2.35 16 45 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16 46 H 0.07 1.79 6.59 -2.38 -0.02 1.78 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.03 1.31 5.93 -2.39 -0.01 1.30 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.23 6.32 -2.38 -0.02 1.22 16 Total: -1.00 -65.13 379.83 2.97 -62.15 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.91 Total: 28.42 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 6.01 Total: -22.26 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -5.93 Total: -84.31 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.04 Total: -30.97 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.13 2.97 -62.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.078 kcal (2) G-P(sol) polarization free energy of solvation -65.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds