Wall clock time and date at job start Tue Mar 31 2020 16:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99620 * 2 1 4 4 C 1.52791 * 109.41841 * 187.11299 * 3 2 1 5 5 N 1.47083 * 108.76517 * 306.42227 * 4 3 2 6 6 C 1.34768 * 120.88068 * 231.12262 * 5 4 3 7 7 O 1.21282 * 120.00009 * 179.72514 * 6 5 4 8 8 C 1.50705 * 120.00001 * 359.72059 * 6 5 4 9 9 C 1.53004 * 109.47024 * 179.97438 * 8 6 5 10 10 H 1.08992 * 109.47527 * 305.00340 * 9 8 6 11 11 C 1.50703 * 109.46700 * 65.00577 * 9 8 6 12 12 H 1.07995 * 120.00408 * 29.58262 * 11 9 8 13 13 C 1.37875 * 119.99555 * 209.58275 * 11 9 8 14 14 N 1.31515 * 120.00351 * 4.94141 * 13 11 9 15 15 Si 1.86807 * 119.99837 * 184.94411 * 13 11 9 16 16 H 1.48497 * 109.46902 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46990 * 119.99713 * 15 13 11 18 18 H 1.48500 * 109.46875 * 239.99917 * 15 13 11 19 19 C 1.50702 * 109.47009 * 185.00060 * 9 8 6 20 20 C 1.38230 * 120.00186 * 296.77393 * 19 9 8 21 21 C 1.38233 * 120.00106 * 179.78657 * 20 19 9 22 22 C 1.38238 * 119.99678 * 0.44300 * 21 20 19 23 23 C 1.38238 * 120.00211 * 359.81068 * 22 21 20 24 24 C 1.38231 * 119.99715 * 359.97438 * 23 22 21 25 25 C 1.47081 * 118.23285 * 50.85256 * 5 4 3 26 26 C 1.46900 * 110.99825 * 124.29765 * 2 1 3 27 27 C 1.53000 * 109.49364 * 52.79086 * 26 2 1 28 28 C 1.53000 * 109.49425 * 292.70651 * 26 2 1 29 29 H 1.09002 * 109.47088 * 295.69903 * 1 2 3 30 30 H 1.08997 * 109.46932 * 55.70064 * 1 2 3 31 31 H 1.08999 * 109.47270 * 175.70198 * 1 2 3 32 32 H 1.08994 * 109.49288 * 307.20792 * 3 2 1 33 33 H 1.08995 * 109.49222 * 67.26877 * 3 2 1 34 34 H 1.08998 * 109.55496 * 186.60649 * 4 3 2 35 35 H 1.09000 * 109.45765 * 66.18114 * 4 3 2 36 36 H 1.09006 * 109.46805 * 60.00641 * 8 6 5 37 37 H 1.08992 * 109.47529 * 300.00438 * 8 6 5 38 38 H 0.96996 * 119.99933 * 180.02562 * 14 13 11 39 39 H 1.08008 * 120.00131 * 359.97438 * 20 19 9 40 40 H 1.08004 * 120.00565 * 180.27005 * 21 20 19 41 41 H 1.08008 * 119.99737 * 179.83466 * 22 21 20 42 42 H 1.07994 * 120.00204 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99967 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.62698 * 68.80105 * 25 5 4 45 45 H 1.09008 * 109.62181 * 189.37320 * 25 5 4 46 46 H 1.08997 * 109.47365 * 179.86147 * 27 26 2 47 47 H 1.09012 * 109.46951 * 299.86312 * 27 26 2 48 48 H 1.09003 * 109.47226 * 59.85621 * 27 26 2 49 49 H 1.08993 * 109.47054 * 300.13499 * 28 26 2 50 50 H 1.08999 * 109.47069 * 60.13781 * 28 26 2 51 51 H 1.09004 * 109.46714 * 180.13360 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5124 1.3334 -0.1784 5 7 4.0870 0.4461 0.8443 6 6 5.1055 0.8584 1.6245 7 8 5.5639 0.1152 2.4662 8 6 5.6751 2.2428 1.4510 9 6 6.8116 2.4560 2.4529 10 1 6.4486 2.2586 3.4615 11 6 7.9453 1.5157 2.1340 12 1 8.1127 1.1975 1.1157 13 6 8.7688 1.0619 3.1424 14 7 8.5076 1.3705 4.3938 15 14 10.2556 0.0084 2.7310 16 1 10.3270 -0.1948 1.2617 17 1 11.4896 0.6903 3.1974 18 1 10.1318 -1.3080 3.4069 19 6 7.2992 3.8792 2.3641 20 6 7.8700 4.3424 1.1934 21 6 8.3133 5.6491 1.1105 22 6 8.1940 6.4899 2.2012 23 6 7.6280 6.0252 3.3736 24 6 7.1807 4.7198 3.4551 25 6 3.5163 -0.9009 0.9968 26 6 1.9955 -0.7728 1.1330 27 6 1.3641 -2.1665 1.1377 28 6 1.6586 -0.0547 2.4413 29 1 -0.3633 0.4457 0.9260 30 1 -0.3633 0.5791 -0.8489 31 1 -0.3634 -1.0248 -0.0770 32 1 1.5457 1.9337 -0.8183 33 1 1.7551 1.8533 0.9477 34 1 3.9188 2.3380 -0.0618 35 1 3.7518 0.9515 -1.1709 36 1 4.8932 2.9819 1.6263 37 1 6.0587 2.3534 0.4368 38 1 9.0872 1.0515 5.1031 39 1 7.9670 3.6842 0.3426 40 1 8.7554 6.0124 0.1945 41 1 8.5428 7.5101 2.1373 42 1 7.5344 6.6822 4.2256 43 1 6.7380 4.3568 4.3709 44 1 3.7562 -1.5017 0.1195 45 1 3.9256 -1.3728 1.8902 46 1 1.7568 -2.7404 1.9770 47 1 0.2822 -2.0749 1.2345 48 1 1.6034 -2.6769 0.2048 49 1 2.1077 0.9384 2.4367 50 1 0.5767 0.0362 2.5378 51 1 2.0515 -0.6272 3.2816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572540807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:54 Heat of formation + Delta-G solvation = 3.834408 kcal Electronic energy + Delta-G solvation = -29644.540059 eV Core-core repulsion = 25929.967654 eV Total energy + Delta-G solvation = -3714.572405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33052 -38.60550 -37.86584 -34.51465 -34.01727 -33.05369 -31.41132 -30.00417 -29.17236 -28.81105 -27.37985 -26.98838 -25.38842 -24.10065 -22.74677 -22.53526 -21.59607 -19.95288 -18.83690 -18.08203 -16.72995 -16.37270 -16.12404 -15.74292 -15.39002 -15.05143 -14.68847 -14.54432 -14.43074 -14.07609 -13.87926 -13.61439 -13.42553 -13.03070 -12.69014 -12.52768 -12.39462 -12.21817 -12.09309 -11.97400 -11.94055 -11.77809 -11.56006 -11.53605 -11.31694 -11.14890 -10.95894 -10.87093 -10.70670 -10.64564 -10.50836 -10.25246 -10.01907 -9.40046 -9.06845 -8.76266 -8.52313 -8.30373 -8.04123 -8.02375 -7.60977 -5.90067 -3.88965 2.29310 2.34969 3.38769 3.42248 3.45982 3.48442 3.54634 3.81932 4.54226 4.67740 4.75471 4.84509 4.88601 5.03038 5.15978 5.22326 5.35554 5.39239 5.42379 5.50844 5.53996 5.57802 5.65258 5.66717 5.73215 5.73757 5.77406 5.84786 5.87715 5.96535 5.99735 6.03456 6.09476 6.11562 6.21841 6.29233 6.29963 6.41867 6.54654 6.78436 6.87962 6.91380 6.99262 7.01005 7.07777 7.31578 7.46135 7.54927 7.91232 7.95754 8.01532 8.09620 8.41489 9.09315 9.11412 9.72011 11.20124 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003960 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.804966 B = 7068.189704 C = 8541.002603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.035 3.965 4 C 0.116 3.884 5 N -0.630 5.630 6 C 0.516 3.484 7 O -0.492 6.492 8 C -0.119 4.119 9 C 0.079 3.921 10 H 0.072 0.928 11 C -0.488 4.488 12 H 0.050 0.950 13 C 0.077 3.923 14 N -0.881 5.881 15 Si 0.884 3.116 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.022 4.022 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.155 4.155 23 C -0.129 4.129 24 C -0.119 4.119 25 C 0.131 3.869 26 C 0.092 3.908 27 C -0.140 4.140 28 C -0.175 4.175 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.258 0.742 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 1.580 -8.481 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.093 4.093 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.304 3.696 7 O -0.363 6.363 8 C -0.159 4.159 9 C 0.060 3.940 10 H 0.090 0.910 11 C -0.526 4.526 12 H 0.069 0.931 13 C -0.126 4.126 14 N -0.518 5.518 15 Si 0.713 3.287 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.023 4.023 20 C -0.132 4.132 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.147 4.147 24 C -0.138 4.138 25 C 0.007 3.993 26 C 0.002 3.998 27 C -0.198 4.198 28 C -0.234 4.234 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.671 0.909 -8.226 16.844 hybrid contribution 0.654 -0.085 0.522 0.841 sum -14.017 0.824 -7.704 16.016 Atomic orbital electron populations 1.22443 0.87831 1.02285 1.00291 1.62190 1.07401 1.13363 1.42502 1.22482 0.95933 0.89705 1.01197 1.21593 0.91775 0.95246 0.92186 1.48314 1.36029 1.14667 1.37777 1.20913 0.78196 0.90196 0.80252 1.90759 1.57006 1.55585 1.32967 1.21780 0.99388 0.92068 1.02668 1.17845 0.91930 0.87656 0.96613 0.91016 1.20703 1.12289 1.26090 0.93513 0.93132 1.24807 0.97493 0.95366 0.94967 1.69913 1.37366 1.45684 0.98873 0.86663 0.83187 0.80416 0.78455 1.19904 1.21249 1.21147 1.20762 0.93575 0.96222 0.91709 1.20955 0.99208 0.94443 0.98637 1.20981 1.01399 0.94700 0.97948 1.20799 1.03322 0.98977 0.94269 1.20982 1.00320 0.96193 0.97175 1.21095 1.00941 0.92914 0.98802 1.21526 0.89950 0.85002 1.02795 1.21452 0.95559 0.94003 0.88805 1.21883 1.00356 0.94971 1.02579 1.22377 1.00764 1.02029 0.98232 0.95501 0.91666 0.91026 0.89973 0.93835 0.89247 0.91355 0.91907 0.90569 0.93256 0.86857 0.87657 0.87818 0.87670 0.86865 0.91753 0.88859 0.91804 0.92298 0.91654 0.91878 0.92951 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.76 60.07 0.53 0.70 16 2 N -0.53 -5.72 4.68 -227.16 -1.06 -6.79 16 3 C 0.04 0.38 5.23 -3.93 -0.02 0.36 16 4 C 0.12 1.42 6.47 -3.83 -0.02 1.40 16 5 N -0.63 -10.00 2.48 -172.73 -0.43 -10.43 16 6 C 0.52 10.46 7.46 -10.99 -0.08 10.37 16 7 O -0.49 -12.40 14.44 5.56 0.08 -12.32 16 8 C -0.12 -2.31 3.31 -27.88 -0.09 -2.40 16 9 C 0.08 1.88 1.69 -92.92 -0.16 1.72 16 10 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 11 C -0.49 -13.19 6.38 -34.44 -0.22 -13.41 16 12 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 13 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 14 N -0.88 -26.08 12.85 55.43 0.71 -25.36 16 15 Si 0.88 22.36 29.54 -169.99 -5.02 17.33 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 20 C -0.11 -2.30 8.86 -39.59 -0.35 -2.65 16 21 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 24 C -0.12 -2.52 9.67 -39.58 -0.38 -2.91 16 25 C 0.13 1.92 5.27 -3.60 -0.02 1.90 16 26 C 0.09 1.08 0.69 -131.48 -0.09 0.99 16 27 C -0.14 -1.37 8.00 37.16 0.30 -1.07 16 28 C -0.18 -2.18 7.68 37.16 0.29 -1.89 16 29 H 0.03 0.23 6.52 -51.93 -0.34 -0.10 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.57 6.21 -51.93 -0.32 0.25 16 32 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.04 0.50 6.10 -51.93 -0.32 0.18 16 34 H 0.09 1.03 6.02 -51.93 -0.31 0.72 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.07 7.65 -51.93 -0.40 0.68 16 37 H 0.08 1.38 7.63 -51.93 -0.40 0.98 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 2.20 7.76 -52.48 -0.41 1.79 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.57 7.06 -51.92 -0.37 1.20 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.50 6.33 -51.92 -0.33 0.17 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.89 5.92 -51.93 -0.31 0.58 16 50 H 0.05 0.57 6.60 -51.93 -0.34 0.22 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -31.99 390.99 -10.33 -42.31 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.38 Total: 3.78 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.12 Total: -14.42 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.78 Total: -42.58 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.99 -10.33 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.149 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds