Wall clock time and date at job start Tue Mar 31 2020 16:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99620 * 2 1 4 4 C 1.52791 * 109.41841 * 187.11299 * 3 2 1 5 5 N 1.47083 * 108.76517 * 306.42227 * 4 3 2 6 6 C 1.34768 * 120.88068 * 231.12262 * 5 4 3 7 7 O 1.21282 * 120.00009 * 179.72514 * 6 5 4 8 8 C 1.50705 * 120.00001 * 359.72059 * 6 5 4 9 9 C 1.53004 * 109.47024 * 179.97438 * 8 6 5 10 10 H 1.08992 * 109.47527 * 305.00340 * 9 8 6 11 11 C 1.50703 * 109.46700 * 65.00577 * 9 8 6 12 12 H 1.07995 * 120.00408 * 29.58262 * 11 9 8 13 13 C 1.37875 * 119.99555 * 209.58275 * 11 9 8 14 14 N 1.31515 * 120.00351 * 4.94141 * 13 11 9 15 15 Si 1.86807 * 119.99837 * 184.94411 * 13 11 9 16 16 H 1.48497 * 109.46902 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46990 * 119.99713 * 15 13 11 18 18 H 1.48500 * 109.46875 * 239.99917 * 15 13 11 19 19 C 1.50702 * 109.47009 * 185.00060 * 9 8 6 20 20 C 1.38230 * 120.00186 * 296.77393 * 19 9 8 21 21 C 1.38233 * 120.00106 * 179.78657 * 20 19 9 22 22 C 1.38238 * 119.99678 * 0.44300 * 21 20 19 23 23 C 1.38238 * 120.00211 * 359.81068 * 22 21 20 24 24 C 1.38231 * 119.99715 * 359.97438 * 23 22 21 25 25 C 1.47081 * 118.23285 * 50.85256 * 5 4 3 26 26 C 1.46900 * 110.99825 * 124.29765 * 2 1 3 27 27 C 1.53000 * 109.49364 * 52.79086 * 26 2 1 28 28 C 1.53000 * 109.49425 * 292.70651 * 26 2 1 29 29 H 1.09002 * 109.47088 * 295.69903 * 1 2 3 30 30 H 1.08997 * 109.46932 * 55.70064 * 1 2 3 31 31 H 1.08999 * 109.47270 * 175.70198 * 1 2 3 32 32 H 1.08994 * 109.49288 * 307.20792 * 3 2 1 33 33 H 1.08995 * 109.49222 * 67.26877 * 3 2 1 34 34 H 1.08998 * 109.55496 * 186.60649 * 4 3 2 35 35 H 1.09000 * 109.45765 * 66.18114 * 4 3 2 36 36 H 1.09006 * 109.46805 * 60.00641 * 8 6 5 37 37 H 1.08992 * 109.47529 * 300.00438 * 8 6 5 38 38 H 0.96996 * 119.99933 * 180.02562 * 14 13 11 39 39 H 1.08008 * 120.00131 * 359.97438 * 20 19 9 40 40 H 1.08004 * 120.00565 * 180.27005 * 21 20 19 41 41 H 1.08008 * 119.99737 * 179.83466 * 22 21 20 42 42 H 1.07994 * 120.00204 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99967 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.62698 * 68.80105 * 25 5 4 45 45 H 1.09008 * 109.62181 * 189.37320 * 25 5 4 46 46 H 1.08997 * 109.47365 * 179.86147 * 27 26 2 47 47 H 1.09012 * 109.46951 * 299.86312 * 27 26 2 48 48 H 1.09003 * 109.47226 * 59.85621 * 27 26 2 49 49 H 1.08993 * 109.47054 * 300.13499 * 28 26 2 50 50 H 1.08999 * 109.47069 * 60.13781 * 28 26 2 51 51 H 1.09004 * 109.46714 * 180.13360 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5124 1.3334 -0.1784 5 7 4.0870 0.4461 0.8443 6 6 5.1055 0.8584 1.6245 7 8 5.5639 0.1152 2.4662 8 6 5.6751 2.2428 1.4510 9 6 6.8116 2.4560 2.4529 10 1 6.4486 2.2586 3.4615 11 6 7.9453 1.5157 2.1340 12 1 8.1127 1.1975 1.1157 13 6 8.7688 1.0619 3.1424 14 7 8.5076 1.3705 4.3938 15 14 10.2556 0.0084 2.7310 16 1 10.3270 -0.1948 1.2617 17 1 11.4896 0.6903 3.1974 18 1 10.1318 -1.3080 3.4069 19 6 7.2992 3.8792 2.3641 20 6 7.8700 4.3424 1.1934 21 6 8.3133 5.6491 1.1105 22 6 8.1940 6.4899 2.2012 23 6 7.6280 6.0252 3.3736 24 6 7.1807 4.7198 3.4551 25 6 3.5163 -0.9009 0.9968 26 6 1.9955 -0.7728 1.1330 27 6 1.3641 -2.1665 1.1377 28 6 1.6586 -0.0547 2.4413 29 1 -0.3633 0.4457 0.9260 30 1 -0.3633 0.5791 -0.8489 31 1 -0.3634 -1.0248 -0.0770 32 1 1.5457 1.9337 -0.8183 33 1 1.7551 1.8533 0.9477 34 1 3.9188 2.3380 -0.0618 35 1 3.7518 0.9515 -1.1709 36 1 4.8932 2.9819 1.6263 37 1 6.0587 2.3534 0.4368 38 1 9.0872 1.0515 5.1031 39 1 7.9670 3.6842 0.3426 40 1 8.7554 6.0124 0.1945 41 1 8.5428 7.5101 2.1373 42 1 7.5344 6.6822 4.2256 43 1 6.7380 4.3568 4.3709 44 1 3.7562 -1.5017 0.1195 45 1 3.9256 -1.3728 1.8902 46 1 1.7568 -2.7404 1.9770 47 1 0.2822 -2.0749 1.2345 48 1 1.6034 -2.6769 0.2048 49 1 2.1077 0.9384 2.4367 50 1 0.5767 0.0362 2.5378 51 1 2.0515 -0.6272 3.2816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572540807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:53 Heat of formation + Delta-G solvation = -14.909092 kcal Electronic energy + Delta-G solvation = -29645.352838 eV Core-core repulsion = 25929.967654 eV Total energy + Delta-G solvation = -3715.385184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51687 -40.08618 -39.30864 -35.90707 -35.70866 -34.05800 -33.36091 -31.50459 -30.59487 -29.87177 -28.37622 -28.30801 -27.01114 -25.30354 -24.15443 -23.71398 -23.11219 -21.51239 -20.18766 -19.23448 -18.48947 -18.08053 -17.26825 -17.11707 -16.63439 -16.39078 -16.27401 -15.85699 -15.50826 -15.44938 -15.41427 -14.92358 -14.72245 -14.23641 -14.18836 -13.96840 -13.71833 -13.59220 -13.45217 -13.19132 -13.12763 -12.94842 -12.90445 -12.85981 -12.59900 -12.51817 -12.43351 -12.25776 -12.13213 -11.92316 -11.84107 -11.69340 -11.66422 -11.27541 -10.97603 -10.55087 -10.33948 -9.61783 -9.54400 -9.19865 -9.13104 -8.03732 -6.06204 0.77694 0.83756 1.34697 1.37118 1.45641 1.95970 2.14841 2.45714 2.92673 3.18248 3.35054 3.64430 3.87583 3.90050 4.08099 4.10694 4.24936 4.31800 4.33302 4.36032 4.39972 4.52087 4.53940 4.57395 4.61170 4.67989 4.69047 4.72564 4.75404 4.80948 4.83155 4.91174 4.92491 4.96641 5.00074 5.02919 5.08293 5.21843 5.22556 5.34028 5.37655 5.51420 5.64306 5.71941 5.78347 5.83680 5.95988 6.09839 6.13206 6.18136 6.41591 6.46391 6.62176 7.01265 7.54036 7.56958 9.06153 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003960 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.804966 B = 7068.189704 C = 8541.002603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.039 3.961 4 C 0.108 3.892 5 N -0.621 5.621 6 C 0.511 3.489 7 O -0.557 6.557 8 C -0.109 4.109 9 C 0.083 3.917 10 H 0.021 0.979 11 C -0.480 4.480 12 H 0.045 0.955 13 C 0.021 3.979 14 N -0.918 5.918 15 Si 0.934 3.066 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.292 1.292 19 C -0.046 4.046 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.144 4.144 25 C 0.127 3.873 26 C 0.099 3.901 27 C -0.135 4.135 28 C -0.170 4.170 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.042 0.958 50 H 0.072 0.928 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.323 3.557 -11.556 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.090 4.090 4 C -0.014 4.014 5 N -0.357 5.357 6 C 0.301 3.699 7 O -0.433 6.433 8 C -0.149 4.149 9 C 0.063 3.937 10 H 0.039 0.961 11 C -0.518 4.518 12 H 0.063 0.937 13 C -0.178 4.178 14 N -0.558 5.558 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.219 1.219 19 C -0.046 4.046 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.163 4.163 25 C 0.004 3.996 26 C 0.009 3.991 27 C -0.193 4.193 28 C -0.229 4.229 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.149 0.851 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.091 0.909 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.836 2.902 -11.369 19.709 hybrid contribution 0.902 -0.616 1.402 1.777 sum -14.935 2.286 -9.967 18.100 Atomic orbital electron populations 1.22527 0.85947 1.03331 1.01002 1.62209 1.09008 1.13213 1.41374 1.22493 0.94517 0.89991 1.01957 1.21914 0.93133 0.94931 0.91407 1.48291 1.34568 1.15578 1.37239 1.21088 0.78745 0.90088 0.79989 1.90733 1.59577 1.57132 1.35853 1.21632 0.98705 0.92378 1.02186 1.17607 0.92291 0.88786 0.94978 0.96080 1.20974 1.12321 1.25732 0.92802 0.93697 1.25497 1.00133 0.97066 0.95074 1.70064 1.38452 1.47723 0.99578 0.85871 0.80742 0.78694 0.78564 1.18828 1.20663 1.21920 1.20545 0.95477 0.95326 0.93275 1.21038 0.99588 0.95924 0.97823 1.21380 0.99918 0.93445 0.99561 1.21272 1.01386 1.00688 0.93107 1.21276 0.99402 0.95081 0.98885 1.21091 1.02587 0.94662 0.97938 1.21612 0.92182 0.84238 1.01582 1.21327 0.93379 0.95516 0.88926 1.21856 1.01296 0.93418 1.02744 1.22327 1.01750 1.00613 0.98176 0.95535 0.89992 0.90041 0.86961 0.94724 0.88385 0.89996 0.89560 0.88734 0.93852 0.86593 0.84009 0.83808 0.85113 0.89082 0.91077 0.91995 0.92252 0.90387 0.91083 0.93897 0.90908 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.76 127.69 1.12 1.39 16 2 N -0.53 -10.22 4.68 -872.59 -4.08 -14.31 16 3 C 0.04 0.73 5.23 86.23 0.45 1.18 16 4 C 0.11 2.48 6.47 86.20 0.56 3.04 16 5 N -0.62 -20.04 2.48 -818.80 -2.03 -22.07 16 6 C 0.51 21.75 7.46 87.66 0.65 22.41 16 7 O -0.56 -30.22 14.44 -3.03 -0.04 -30.27 16 8 C -0.11 -4.35 3.31 29.85 0.10 -4.25 16 9 C 0.08 4.15 1.69 -12.28 -0.02 4.13 16 10 H 0.02 1.26 6.95 -2.39 -0.02 1.24 16 11 C -0.48 -26.98 6.38 25.60 0.16 -26.81 16 12 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 13 C 0.02 1.22 5.45 84.65 0.46 1.68 16 14 N -0.92 -57.64 12.85 21.45 0.28 -57.36 16 15 Si 0.93 47.38 29.54 68.60 2.03 49.40 16 16 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 18 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 19 C -0.05 -2.05 4.77 -19.87 -0.09 -2.15 16 20 C -0.13 -4.89 8.86 22.27 0.20 -4.69 16 21 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 22 C -0.15 -4.53 10.05 22.27 0.22 -4.31 16 23 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 24 C -0.14 -6.27 9.67 22.27 0.22 -6.05 16 25 C 0.13 3.84 5.27 86.35 0.46 4.29 16 26 C 0.10 2.26 0.69 3.61 0.00 2.27 16 27 C -0.14 -2.46 8.00 71.98 0.58 -1.88 16 28 C -0.17 -4.26 7.68 71.98 0.55 -3.70 16 29 H 0.03 0.38 6.52 -2.39 -0.02 0.37 16 30 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.08 0.99 6.21 -2.39 -0.01 0.98 16 32 H 0.11 1.49 8.06 -2.39 -0.02 1.47 16 33 H 0.03 0.73 6.10 -2.39 -0.01 0.72 16 34 H 0.10 2.07 6.02 -2.39 -0.01 2.06 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 2.98 7.65 -2.38 -0.02 2.96 16 37 H 0.09 3.39 7.63 -2.39 -0.02 3.37 16 38 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.12 4.35 7.76 -2.91 -0.02 4.33 16 40 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 43 H 0.09 4.23 7.95 -2.91 -0.02 4.20 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.26 7.06 -2.38 -0.02 2.25 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.13 6.33 -2.38 -0.02 1.11 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.04 1.23 5.92 -2.39 -0.01 1.22 16 50 H 0.07 1.50 6.60 -2.39 -0.02 1.48 16 51 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -75.21 390.99 3.10 -72.11 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.90 Total: 24.07 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 6.06 Total: -21.57 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -5.84 Total: -93.74 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.04 Total: -30.27 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -75.21 3.10 -72.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.199 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds