Wall clock time and date at job start Tue Mar 31 2020 16:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46780 * 2 1 4 4 C 1.38298 * 119.96891 * 265.00008 * 3 2 1 5 5 C 1.38252 * 120.14599 * 180.02562 * 4 3 2 6 6 C 1.38137 * 120.06970 * 0.25268 * 5 4 3 7 7 C 1.38850 * 119.92344 * 359.45441 * 6 5 4 8 8 N 1.39947 * 120.06683 * 180.25627 * 7 6 5 9 9 C 1.34777 * 119.99988 * 332.10776 * 8 7 6 10 10 O 1.21587 * 120.00008 * 4.09004 * 9 8 7 11 11 N 1.34776 * 119.99938 * 184.09347 * 9 8 7 12 12 C 1.46924 * 120.63382 * 4.82544 * 11 9 8 13 13 C 1.52758 * 109.00978 * 233.58726 * 12 11 9 14 14 C 1.53040 * 109.38467 * 305.58690 * 13 12 11 15 15 C 1.50705 * 109.45187 * 181.25291 * 14 13 12 16 16 H 1.07994 * 119.99970 * 239.93856 * 15 14 13 17 17 C 1.37878 * 119.99573 * 59.94000 * 15 14 13 18 18 N 1.31511 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47586 * 89.99688 * 19 17 15 21 21 H 1.48498 * 109.47028 * 209.99742 * 19 17 15 22 22 H 1.48505 * 109.46911 * 329.99785 * 19 17 15 23 23 C 1.53041 * 109.53669 * 61.23973 * 14 13 12 24 24 C 1.46935 * 120.62895 * 185.11074 * 11 9 8 25 25 C 1.38096 * 119.96594 * 85.02900 * 3 2 1 26 26 C 1.50698 * 120.03253 * 359.94594 * 25 3 2 27 27 C 1.53009 * 109.46819 * 90.00663 * 26 25 3 28 28 H 1.09003 * 109.47182 * 299.99691 * 1 2 3 29 29 H 1.08997 * 109.47376 * 59.99496 * 1 2 3 30 30 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46833 * 240.00688 * 2 1 3 32 32 H 1.08990 * 109.47112 * 120.00282 * 2 1 3 33 33 H 1.08004 * 119.92694 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.96825 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.03639 * 179.72615 * 6 5 4 36 36 H 0.97003 * 120.00515 * 152.11333 * 8 7 6 37 37 H 1.08999 * 109.58285 * 353.42228 * 12 11 9 38 38 H 1.09000 * 109.58439 * 113.84715 * 12 11 9 39 39 H 1.09005 * 109.56689 * 185.55178 * 13 12 11 40 40 H 1.09000 * 109.38742 * 65.51642 * 13 12 11 41 41 H 1.08997 * 109.46081 * 301.21964 * 14 13 12 42 42 H 0.96995 * 120.00268 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.49645 * 178.68375 * 23 14 13 44 44 H 1.09001 * 109.52370 * 58.60557 * 23 14 13 45 45 H 1.09004 * 109.58129 * 246.15219 * 24 11 9 46 46 H 1.08997 * 109.58360 * 6.43467 * 24 11 9 47 47 H 1.09002 * 109.47375 * 210.00358 * 26 25 3 48 48 H 1.08999 * 109.47583 * 330.00961 * 26 25 3 49 49 H 1.08997 * 109.46981 * 299.99512 * 27 26 25 50 50 H 1.08995 * 109.46875 * 60.00308 * 27 26 25 51 51 H 1.09004 * 109.46812 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0374 -1.1935 5 6 2.8226 3.3406 -1.1977 6 6 2.9619 4.0293 -0.0085 7 6 2.6269 3.4152 1.1910 8 7 2.7618 4.1121 2.3971 9 6 3.6837 5.0885 2.5118 10 8 4.3470 5.4148 1.5464 11 7 3.8704 5.7032 3.6966 12 6 3.1534 5.2501 4.8962 13 6 2.4271 6.4400 5.5209 14 6 3.4281 7.5694 5.7755 15 6 2.7190 8.7326 6.4201 16 1 2.7071 9.6956 5.9315 17 6 2.0856 8.5672 7.6335 18 7 2.0998 7.3943 8.2282 19 14 1.2061 10.0087 8.4321 20 1 -0.2078 10.0385 7.9793 21 1 1.2499 9.8587 9.9089 22 1 1.8772 11.2751 8.0431 23 6 4.0415 8.0187 4.4474 24 6 4.7903 6.8432 3.8117 25 6 2.1644 2.1057 1.1919 26 6 1.8055 1.4334 2.4919 27 6 3.0386 0.7259 3.0576 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.2568 1.4996 -2.1244 34 1 3.0788 3.8191 -2.1314 35 1 3.3267 5.0458 -0.0120 36 1 2.1919 3.8923 3.1506 37 1 2.4280 4.4846 4.6210 38 1 3.8644 4.8415 5.6144 39 1 1.9734 6.1365 6.4644 40 1 1.6510 6.7885 4.8396 41 1 4.2170 7.2129 6.4377 42 1 1.6545 7.2780 9.0820 43 1 4.7368 8.8387 4.6267 44 1 3.2508 8.3526 3.7754 45 1 5.6375 6.5670 4.4396 46 1 5.1465 7.1267 2.8214 47 1 1.4573 2.1816 3.2040 48 1 1.0157 0.7027 2.3173 49 1 3.3868 -0.0223 2.3456 50 1 3.8284 1.4565 3.2323 51 1 2.7789 0.2392 3.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576803745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:06 Heat of formation + Delta-G solvation = -17.124667 kcal Electronic energy + Delta-G solvation = -29063.535976 eV Core-core repulsion = 25348.054718 eV Total energy + Delta-G solvation = -3715.481258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85064 -39.33075 -37.11585 -35.11554 -34.68697 -33.59947 -32.61370 -31.19434 -30.16361 -28.99715 -28.78738 -26.18862 -24.54000 -23.73743 -23.11100 -22.44533 -21.51146 -20.68701 -19.86539 -18.99395 -18.07774 -16.78089 -16.33803 -16.10732 -15.78894 -15.32020 -14.83927 -14.59748 -14.29185 -13.87775 -13.82422 -13.66868 -13.60355 -13.51298 -13.18881 -12.86585 -12.74193 -12.54712 -12.49480 -12.31028 -12.11568 -11.68863 -11.67691 -11.48357 -11.35912 -11.30521 -10.98042 -10.86721 -10.72520 -10.68347 -10.44479 -10.26363 -10.16685 -9.71890 -9.50446 -9.22716 -9.00858 -8.52393 -8.43907 -8.20272 -7.75793 -6.08069 -4.14060 1.38549 1.46537 2.83865 3.25133 3.32475 3.33807 3.36105 3.88254 4.04226 4.37146 4.61137 4.71718 4.84109 4.86303 5.16444 5.19675 5.20708 5.27090 5.28857 5.35055 5.40905 5.49991 5.57125 5.60472 5.66547 5.72207 5.75234 5.85365 5.90813 5.96670 5.98989 6.00362 6.05309 6.11388 6.18884 6.21437 6.34387 6.41260 6.54678 6.59552 6.66781 6.68476 6.82549 6.93103 7.06087 7.12795 7.20183 7.33537 7.61349 7.85847 7.97348 8.11818 8.34930 8.74894 8.89385 9.51376 10.97472 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002805 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.043352 B = 9979.536958 C =10706.969718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.063 4.063 4 C -0.143 4.143 5 C -0.103 4.103 6 C -0.134 4.134 7 C 0.181 3.819 8 N -0.685 5.685 9 C 0.705 3.295 10 O -0.586 6.586 11 N -0.612 5.612 12 C 0.109 3.891 13 C -0.125 4.125 14 C 0.050 3.950 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.125 4.125 24 C 0.129 3.871 25 C -0.117 4.117 26 C -0.083 4.083 27 C -0.146 4.146 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.406 0.594 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -15.181 -13.298 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.064 4.064 4 C -0.162 4.162 5 C -0.122 4.122 6 C -0.154 4.154 7 C 0.084 3.916 8 N -0.334 5.334 9 C 0.407 3.593 10 O -0.465 6.465 11 N -0.348 5.348 12 C -0.014 4.014 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.163 4.163 24 C 0.007 3.993 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.203 4.203 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.821 -14.961 -13.697 20.301 hybrid contribution -0.862 0.717 0.956 1.473 sum -1.682 -14.245 -12.741 19.185 Atomic orbital electron populations 1.21766 0.94847 1.01495 1.02364 1.20538 0.96088 0.92809 1.02718 1.19408 0.99178 0.95746 0.92041 1.20898 1.02632 0.95584 0.97127 1.21018 0.98937 0.94509 0.97708 1.21628 1.01171 1.02315 0.90306 1.17413 0.98825 0.90038 0.85289 1.42925 1.38390 1.37745 1.14388 1.15829 0.80218 0.79417 0.83812 1.90800 1.51075 1.67513 1.37139 1.47488 1.46360 1.33856 1.07077 1.21867 0.95194 0.98308 0.85994 1.21972 0.98795 0.94423 1.01192 1.18618 0.94037 0.93725 0.90503 1.21204 1.33404 0.96089 1.04268 0.92663 1.24957 0.96267 0.95724 0.97011 1.69822 1.44166 1.22312 1.16822 0.86612 0.80031 0.82994 0.78481 1.20747 1.21239 1.19941 1.22039 0.99213 0.95715 0.99339 1.21633 0.91001 0.85312 1.01370 1.19376 1.05346 0.91941 0.95366 1.20474 0.98670 0.99393 0.93526 1.21728 0.97664 1.00470 1.00448 0.92377 0.92540 0.92568 0.91240 0.90831 0.86552 0.86140 0.83072 0.75414 0.92787 0.91582 0.87635 0.94238 0.95365 0.92961 0.91935 0.92933 0.92170 0.90148 0.91840 0.90422 0.92535 0.92551 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.70 37.16 0.36 -0.74 16 2 C -0.08 -0.70 5.37 -27.88 -0.15 -0.85 16 3 C -0.06 -0.69 5.13 -104.65 -0.54 -1.23 16 4 C -0.14 -1.59 9.67 -39.55 -0.38 -1.98 16 5 C -0.10 -1.29 10.04 -39.61 -0.40 -1.68 16 6 C -0.13 -2.02 8.76 -39.39 -0.35 -2.37 16 7 C 0.18 2.63 6.40 -83.69 -0.54 2.10 16 8 N -0.69 -10.30 5.03 -14.22 -0.07 -10.37 16 9 C 0.70 12.57 8.18 -86.92 -0.71 11.86 16 10 O -0.59 -11.75 12.81 5.29 0.07 -11.68 16 11 N -0.61 -10.85 2.98 -178.76 -0.53 -11.38 16 12 C 0.11 1.87 6.41 -3.94 -0.03 1.85 16 13 C -0.13 -2.66 5.14 -26.83 -0.14 -2.80 16 14 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 15 C -0.51 -13.34 8.56 -34.44 -0.29 -13.64 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.91 11.30 55.43 0.63 -23.29 16 19 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 24 C 0.13 2.32 6.42 -3.71 -0.02 2.30 16 25 C -0.12 -1.43 5.15 -104.44 -0.54 -1.96 16 26 C -0.08 -0.84 5.13 -27.88 -0.14 -0.98 16 27 C -0.15 -1.42 9.77 37.16 0.36 -1.06 16 28 H 0.06 0.46 6.91 -51.93 -0.36 0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.07 0.58 6.06 -51.93 -0.31 0.26 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.15 2.60 5.69 -52.49 -0.30 2.30 16 36 H 0.41 5.41 4.48 -40.82 -0.18 5.23 16 37 H 0.05 0.78 5.57 -51.93 -0.29 0.49 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 47 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 48 H 0.08 0.67 5.42 -51.93 -0.28 0.39 16 49 H 0.06 0.52 7.31 -51.93 -0.38 0.14 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -28.59 388.04 -11.16 -39.75 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.15 Total: 6.93 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.92 Total: -11.35 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.02 Total: -45.04 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.59 -11.16 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576803745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.621 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds