Wall clock time and date at job start Tue Mar 31 2020 16:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46780 * 2 1 4 4 C 1.38298 * 119.96891 * 265.00008 * 3 2 1 5 5 C 1.38252 * 120.14599 * 180.02562 * 4 3 2 6 6 C 1.38137 * 120.06970 * 0.25268 * 5 4 3 7 7 C 1.38850 * 119.92344 * 359.45441 * 6 5 4 8 8 N 1.39947 * 120.06683 * 180.25627 * 7 6 5 9 9 C 1.34777 * 119.99988 * 332.10776 * 8 7 6 10 10 O 1.21587 * 120.00008 * 4.09004 * 9 8 7 11 11 N 1.34776 * 119.99938 * 184.09347 * 9 8 7 12 12 C 1.46924 * 120.63382 * 4.82544 * 11 9 8 13 13 C 1.52758 * 109.00978 * 233.58726 * 12 11 9 14 14 C 1.53040 * 109.38467 * 305.58690 * 13 12 11 15 15 C 1.50705 * 109.45187 * 181.25291 * 14 13 12 16 16 H 1.07994 * 119.99970 * 239.93856 * 15 14 13 17 17 C 1.37878 * 119.99573 * 59.94000 * 15 14 13 18 18 N 1.31511 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47586 * 89.99688 * 19 17 15 21 21 H 1.48498 * 109.47028 * 209.99742 * 19 17 15 22 22 H 1.48505 * 109.46911 * 329.99785 * 19 17 15 23 23 C 1.53041 * 109.53669 * 61.23973 * 14 13 12 24 24 C 1.46935 * 120.62895 * 185.11074 * 11 9 8 25 25 C 1.38096 * 119.96594 * 85.02900 * 3 2 1 26 26 C 1.50698 * 120.03253 * 359.94594 * 25 3 2 27 27 C 1.53009 * 109.46819 * 90.00663 * 26 25 3 28 28 H 1.09003 * 109.47182 * 299.99691 * 1 2 3 29 29 H 1.08997 * 109.47376 * 59.99496 * 1 2 3 30 30 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46833 * 240.00688 * 2 1 3 32 32 H 1.08990 * 109.47112 * 120.00282 * 2 1 3 33 33 H 1.08004 * 119.92694 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.96825 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.03639 * 179.72615 * 6 5 4 36 36 H 0.97003 * 120.00515 * 152.11333 * 8 7 6 37 37 H 1.08999 * 109.58285 * 353.42228 * 12 11 9 38 38 H 1.09000 * 109.58439 * 113.84715 * 12 11 9 39 39 H 1.09005 * 109.56689 * 185.55178 * 13 12 11 40 40 H 1.09000 * 109.38742 * 65.51642 * 13 12 11 41 41 H 1.08997 * 109.46081 * 301.21964 * 14 13 12 42 42 H 0.96995 * 120.00268 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.49645 * 178.68375 * 23 14 13 44 44 H 1.09001 * 109.52370 * 58.60557 * 23 14 13 45 45 H 1.09004 * 109.58129 * 246.15219 * 24 11 9 46 46 H 1.08997 * 109.58360 * 6.43467 * 24 11 9 47 47 H 1.09002 * 109.47375 * 210.00358 * 26 25 3 48 48 H 1.08999 * 109.47583 * 330.00961 * 26 25 3 49 49 H 1.08997 * 109.46981 * 299.99512 * 27 26 25 50 50 H 1.08995 * 109.46875 * 60.00308 * 27 26 25 51 51 H 1.09004 * 109.46812 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0374 -1.1935 5 6 2.8226 3.3406 -1.1977 6 6 2.9619 4.0293 -0.0085 7 6 2.6269 3.4152 1.1910 8 7 2.7618 4.1121 2.3971 9 6 3.6837 5.0885 2.5118 10 8 4.3470 5.4148 1.5464 11 7 3.8704 5.7032 3.6966 12 6 3.1534 5.2501 4.8962 13 6 2.4271 6.4400 5.5209 14 6 3.4281 7.5694 5.7755 15 6 2.7190 8.7326 6.4201 16 1 2.7071 9.6956 5.9315 17 6 2.0856 8.5672 7.6335 18 7 2.0998 7.3943 8.2282 19 14 1.2061 10.0087 8.4321 20 1 -0.2078 10.0385 7.9793 21 1 1.2499 9.8587 9.9089 22 1 1.8772 11.2751 8.0431 23 6 4.0415 8.0187 4.4474 24 6 4.7903 6.8432 3.8117 25 6 2.1644 2.1057 1.1919 26 6 1.8055 1.4334 2.4919 27 6 3.0386 0.7259 3.0576 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.2568 1.4996 -2.1244 34 1 3.0788 3.8191 -2.1314 35 1 3.3267 5.0458 -0.0120 36 1 2.1919 3.8923 3.1506 37 1 2.4280 4.4846 4.6210 38 1 3.8644 4.8415 5.6144 39 1 1.9734 6.1365 6.4644 40 1 1.6510 6.7885 4.8396 41 1 4.2170 7.2129 6.4377 42 1 1.6545 7.2780 9.0820 43 1 4.7368 8.8387 4.6267 44 1 3.2508 8.3526 3.7754 45 1 5.6375 6.5670 4.4396 46 1 5.1465 7.1267 2.8214 47 1 1.4573 2.1816 3.2040 48 1 1.0157 0.7027 2.3173 49 1 3.3868 -0.0223 2.3456 50 1 3.8284 1.4565 3.2323 51 1 2.7789 0.2392 3.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576803745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:05 Heat of formation + Delta-G solvation = -29.357091 kcal Electronic energy + Delta-G solvation = -29064.066414 eV Core-core repulsion = 25348.054718 eV Total energy + Delta-G solvation = -3716.011696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07776 -40.47019 -38.62422 -36.28164 -35.64562 -35.26709 -33.64732 -32.77337 -31.74538 -29.87190 -29.81870 -27.94193 -25.34503 -25.12184 -24.32223 -23.88795 -22.72276 -21.63962 -21.24358 -20.34039 -19.47629 -18.37187 -17.86407 -17.04141 -16.93898 -16.71655 -16.47334 -15.90776 -15.33172 -15.16526 -14.96375 -14.78741 -14.66128 -14.50302 -14.37708 -14.33007 -14.19867 -14.00140 -13.37325 -13.29877 -13.18093 -13.16152 -12.88972 -12.80731 -12.54997 -12.48041 -12.23603 -12.16817 -12.01416 -11.98670 -11.67992 -11.52439 -11.48461 -11.36628 -11.02720 -10.93004 -10.76946 -10.40866 -9.67387 -9.45570 -8.88858 -8.08568 -6.21230 0.40279 0.48539 1.40725 1.43342 1.51628 1.54217 1.99982 2.43715 2.73290 2.88381 3.18158 3.80455 3.88032 3.98978 4.08964 4.11518 4.16089 4.29894 4.38055 4.42193 4.45992 4.48674 4.55034 4.55573 4.59377 4.63823 4.65929 4.71888 4.84861 4.89044 4.94315 5.00679 5.03774 5.09064 5.17246 5.18321 5.21016 5.25078 5.34223 5.35066 5.40173 5.47755 5.52775 5.58984 5.62988 5.69372 5.76777 5.95128 5.98913 6.11319 6.19045 6.38699 6.78658 6.87785 7.38397 7.46404 8.94812 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002805 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.043352 B = 9979.536958 C =10706.969718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.063 4.063 4 C -0.139 4.139 5 C -0.109 4.109 6 C -0.160 4.160 7 C 0.153 3.847 8 N -0.675 5.675 9 C 0.702 3.298 10 O -0.611 6.611 11 N -0.615 5.615 12 C 0.120 3.880 13 C -0.115 4.115 14 C 0.047 3.953 15 C -0.534 4.534 16 H 0.046 0.954 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.114 4.114 24 C 0.136 3.864 25 C -0.116 4.116 26 C -0.083 4.083 27 C -0.142 4.142 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.027 0.973 41 H 0.006 0.994 42 H 0.262 0.738 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.097 0.903 49 H 0.062 0.938 50 H 0.034 0.966 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -17.456 -14.117 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.158 4.158 5 C -0.127 4.127 6 C -0.181 4.181 7 C 0.058 3.942 8 N -0.324 5.324 9 C 0.405 3.595 10 O -0.492 6.492 11 N -0.351 5.351 12 C -0.003 4.003 13 C -0.153 4.153 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.773 3.227 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.152 4.152 24 C 0.013 3.987 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.200 4.200 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.115 0.885 49 H 0.081 0.919 50 H 0.053 0.947 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.718 -17.257 -14.525 22.622 hybrid contribution -0.604 1.382 1.138 1.890 sum -2.323 -15.875 -13.387 20.895 Atomic orbital electron populations 1.21757 0.94109 1.02509 1.01954 1.20608 0.96570 0.90847 1.03906 1.19831 0.97964 0.97090 0.91471 1.21258 1.01076 0.94930 0.98500 1.21225 0.98833 0.95268 0.97399 1.21524 1.03039 1.01636 0.91887 1.17654 1.00614 0.91223 0.84713 1.42750 1.37646 1.37021 1.15007 1.15942 0.80485 0.79817 0.83271 1.90792 1.52184 1.68415 1.37811 1.47461 1.46424 1.33914 1.07259 1.21723 0.95573 0.97144 0.85814 1.21723 0.98215 0.95347 1.00047 1.18590 0.93687 0.93597 0.91315 1.21533 1.34036 0.96734 1.04906 0.93527 1.25603 0.96947 0.97909 0.97543 1.69925 1.44554 1.23512 1.16985 0.85729 0.78968 0.80321 0.77648 1.20405 1.20819 1.19843 1.21880 0.98988 0.96762 0.97600 1.21523 0.91055 0.84752 1.01379 1.19639 1.04348 0.90985 0.96948 1.20548 0.99354 0.99713 0.92434 1.21701 0.96783 1.00046 1.01430 0.92957 0.92839 0.90865 0.89725 0.90055 0.83725 0.84607 0.85927 0.74611 0.89794 0.91064 0.89902 0.95457 0.97571 0.92899 0.91481 0.94054 0.91037 0.89985 0.91947 0.88473 0.91878 0.94680 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.70 71.98 0.70 -1.00 16 2 C -0.08 -1.07 5.37 29.85 0.16 -0.91 16 3 C -0.06 -1.22 5.13 -19.88 -0.10 -1.33 16 4 C -0.14 -2.76 9.67 22.29 0.22 -2.54 16 5 C -0.11 -2.63 10.04 22.25 0.22 -2.41 16 6 C -0.16 -4.93 8.76 22.39 0.20 -4.74 16 7 C 0.15 4.44 6.40 38.15 0.24 4.68 16 8 N -0.67 -20.19 5.03 -317.18 -1.60 -21.79 16 9 C 0.70 25.28 8.18 179.05 1.46 26.74 16 10 O -0.61 -25.13 12.81 -3.99 -0.05 -25.18 16 11 N -0.62 -21.81 2.98 -837.74 -2.50 -24.31 16 12 C 0.12 4.08 6.41 86.22 0.55 4.63 16 13 C -0.11 -4.94 5.14 30.53 0.16 -4.78 16 14 C 0.05 2.20 2.07 -11.51 -0.02 2.18 16 15 C -0.53 -28.43 8.56 25.60 0.22 -28.21 16 16 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 17 C 0.02 1.01 5.30 84.66 0.45 1.46 16 18 N -0.91 -49.32 11.30 21.45 0.24 -49.08 16 19 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 24 C 0.14 4.89 6.42 86.36 0.55 5.45 16 25 C -0.12 -2.65 5.15 -19.75 -0.10 -2.75 16 26 C -0.08 -1.49 5.13 29.85 0.15 -1.34 16 27 C -0.14 -2.47 9.77 71.99 0.70 -1.77 16 28 H 0.05 0.67 6.91 -2.39 -0.02 0.66 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.88 8.05 -2.39 -0.02 0.86 16 32 H 0.08 0.96 6.06 -2.39 -0.01 0.95 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.12 4.45 5.69 -2.91 -0.02 4.44 16 36 H 0.41 10.70 4.48 -92.71 -0.42 10.28 16 37 H 0.08 2.34 5.57 -2.39 -0.01 2.32 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.08 3.99 6.03 -2.38 -0.01 3.97 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 2.96 7.03 -2.39 -0.02 2.94 16 47 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 48 H 0.10 1.37 5.42 -2.39 -0.01 1.36 16 49 H 0.06 1.00 7.31 -2.39 -0.02 0.98 16 50 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 51 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -62.81 388.04 4.57 -58.24 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.51 Total: 28.77 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.93 Total: -11.09 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.85 Total: -95.18 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.81 4.57 -58.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576803745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.885 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds