Wall clock time and date at job start Tue Mar 31 2020 15:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.26531 * 2 1 4 4 C 1.50882 * 109.36702 * 119.68170 * 2 1 3 5 5 C 1.52564 * 109.35978 * 212.07920 * 4 2 1 6 6 C 1.47097 * 114.32665 * 274.98703 * 5 4 2 7 7 C 1.54858 * 110.32245 * 62.79819 * 6 5 4 8 8 N 1.44585 * 109.60461 * 288.73725 * 7 6 5 9 9 C 1.34779 * 118.64248 * 270.70822 * 8 7 6 10 10 O 1.21578 * 119.99968 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00123 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99862 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46927 * 180.02562 * 12 11 9 14 14 C 1.38628 * 119.74832 * 89.99572 * 13 12 11 15 15 C 1.37623 * 120.24561 * 179.70480 * 14 13 12 16 16 C 1.40713 * 119.74300 * 0.27022 * 15 14 13 17 17 C 1.41402 * 120.24056 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00027 * 28.65232 * 17 16 15 19 19 C 1.39945 * 119.99738 * 208.65948 * 17 16 15 20 20 N 1.30825 * 120.00129 * 10.99447 * 19 17 16 21 21 Si 1.86799 * 119.99941 * 191.00643 * 19 17 16 22 22 H 1.48500 * 109.47101 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47830 * 119.99669 * 21 19 17 24 24 H 1.48502 * 109.47005 * 239.99789 * 21 19 17 25 25 C 1.40707 * 119.51497 * 0.02562 * 16 15 14 26 26 C 1.37623 * 119.74672 * 359.97438 * 25 16 15 27 27 C 1.47603 * 122.71384 * 90.98037 * 8 7 6 28 28 H 1.08997 * 109.46886 * 300.32480 * 1 2 3 29 29 H 1.09006 * 109.46727 * 60.32096 * 1 2 3 30 30 H 1.08992 * 109.46891 * 180.31952 * 1 2 3 31 31 H 1.09000 * 109.47715 * 180.08554 * 3 2 1 32 32 H 1.09001 * 109.47118 * 300.08533 * 3 2 1 33 33 H 1.09002 * 109.47472 * 60.07860 * 3 2 1 34 34 H 1.08995 * 109.49153 * 92.10909 * 4 2 1 35 35 H 1.09008 * 109.48820 * 332.04066 * 4 2 1 36 36 H 1.09002 * 108.51587 * 153.73421 * 5 4 2 37 37 H 1.09001 * 108.51533 * 36.24028 * 5 4 2 38 38 H 1.09005 * 109.32352 * 302.54091 * 6 5 4 39 39 H 1.08996 * 109.19209 * 182.97824 * 6 5 4 40 40 H 1.09006 * 109.45309 * 168.69864 * 7 6 5 41 41 H 1.08993 * 109.43044 * 48.76283 * 7 6 5 42 42 H 0.97003 * 119.99528 * 0.02562 * 11 9 8 43 43 H 1.08992 * 109.47233 * 59.99750 * 12 11 9 44 44 H 1.09001 * 109.46810 * 299.99394 * 12 11 9 45 45 H 1.08006 * 119.88312 * 359.97438 * 14 13 12 46 46 H 1.07999 * 120.12546 * 180.30038 * 15 14 13 47 47 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 48 48 H 1.07999 * 120.13065 * 180.02562 * 25 16 15 49 49 H 1.08000 * 119.87923 * 180.02562 * 26 25 16 50 50 H 1.09003 * 108.94179 * 78.29953 * 27 8 7 51 51 H 1.08996 * 108.94785 * 196.92881 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2367 5 6 3.3487 -0.0767 1.6784 6 6 4.5357 -0.6192 0.9998 7 6 4.4646 -0.3320 -0.5202 8 7 3.4427 -1.1587 -1.1228 9 6 3.7848 -2.3808 -1.5764 10 8 2.9452 -3.0967 -2.0870 11 7 5.0577 -2.8094 -1.4641 12 6 5.4296 -4.1377 -1.9578 13 6 6.8983 -4.3713 -1.7133 14 6 7.3141 -4.9497 -0.5241 15 6 8.6522 -5.1733 -0.2927 16 6 9.5998 -4.8073 -1.2664 17 6 10.9772 -5.0327 -1.0399 18 1 11.2939 -5.8481 -0.4066 19 6 11.9300 -4.1990 -1.6362 20 7 11.5546 -3.0913 -2.2225 21 14 13.7377 -4.6680 -1.5955 22 1 13.8983 -5.9580 -0.8776 23 1 14.2444 -4.8075 -2.9843 24 1 14.5075 -3.6110 -0.8916 25 6 9.1666 -4.2153 -2.4671 26 6 7.8234 -4.0010 -2.6772 27 6 2.0417 -0.7171 -1.2668 28 1 -0.3633 0.5189 0.8870 29 1 -0.3633 0.5089 -0.8929 30 1 -0.3633 -1.0276 0.0057 31 1 3.1248 1.4483 -0.0015 32 1 1.6684 1.9573 -0.8892 33 1 1.6708 1.9565 0.8907 34 1 2.1866 -1.7606 1.0154 35 1 1.2946 -0.6052 2.0348 36 1 3.4630 -0.2304 2.7514 37 1 3.3017 0.9957 1.4890 38 1 4.5831 -1.6961 1.1617 39 1 5.4296 -0.1526 1.4138 40 1 5.4285 -0.5556 -0.9774 41 1 4.2222 0.7186 -0.6798 42 1 5.7275 -2.2384 -1.0564 43 1 5.2246 -4.1986 -3.0265 44 1 4.8491 -4.8961 -1.4326 45 1 6.5851 -5.2299 0.2219 46 1 8.9737 -5.6285 0.6324 47 1 12.2150 -2.5137 -2.6361 48 1 9.8852 -3.9308 -3.2215 49 1 7.4885 -3.5472 -3.5982 50 1 1.9705 -0.0371 -2.1158 51 1 1.4143 -1.5874 -1.4590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576983404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:39 Heat of formation + Delta-G solvation = -11.579432 kcal Electronic energy + Delta-G solvation = -28810.443607 eV Core-core repulsion = 25095.202808 eV Total energy + Delta-G solvation = -3715.240799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82848 -38.68249 -37.63258 -35.07717 -34.60284 -33.50590 -33.23869 -30.25792 -29.36110 -28.49862 -27.68200 -27.18370 -25.72688 -24.67818 -23.46646 -21.34415 -21.06670 -20.09956 -19.51995 -18.61350 -17.82709 -17.37241 -16.83858 -15.88195 -15.40947 -15.19608 -14.81397 -14.58017 -14.35027 -14.02369 -13.82918 -13.71817 -13.52113 -13.37150 -13.08780 -12.90460 -12.49441 -12.47804 -12.26780 -12.17374 -12.02330 -11.81577 -11.67009 -11.43500 -11.33106 -11.16982 -11.02865 -10.86993 -10.68958 -10.66491 -10.46809 -10.41454 -10.21091 -9.78691 -9.65324 -9.45296 -9.28992 -8.75744 -8.27731 -7.56482 -7.39909 -6.80419 -4.47287 2.51756 2.91275 2.98295 3.03406 3.08286 3.17960 3.49412 3.87644 4.24561 4.45456 4.50343 4.62248 4.66558 4.74224 4.82319 5.05366 5.23311 5.29178 5.33623 5.39992 5.47170 5.51402 5.59706 5.62602 5.65197 5.72237 5.82504 5.86815 5.89899 5.94007 5.96583 6.00296 6.06411 6.13272 6.20291 6.24815 6.31774 6.34958 6.37376 6.69503 6.86907 6.96191 7.00766 7.15315 7.20300 7.28087 7.52837 7.73727 7.97458 8.01774 8.20691 8.30883 8.55696 8.80897 8.87065 8.91035 10.13175 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002477 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.774389 B =11301.511403 C =11782.962440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.157 4.157 4 C -0.104 4.104 5 C -0.132 4.132 6 C -0.140 4.140 7 C 0.103 3.897 8 N -0.623 5.623 9 C 0.697 3.303 10 O -0.602 6.602 11 N -0.734 5.734 12 C 0.201 3.799 13 C -0.237 4.237 14 C -0.073 4.073 15 C -0.225 4.225 16 C 0.115 3.885 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.162 4.162 26 C -0.084 4.084 27 C 0.141 3.859 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.397 0.603 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.280 0.720 48 H 0.120 0.880 49 H 0.088 0.912 50 H 0.056 0.944 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 10.138 4.820 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.213 4.213 4 C -0.141 4.141 5 C -0.169 4.169 6 C -0.179 4.179 7 C -0.022 4.022 8 N -0.360 5.360 9 C 0.398 3.602 10 O -0.482 6.482 11 N -0.390 5.390 12 C 0.078 3.922 13 C -0.238 4.238 14 C -0.092 4.092 15 C -0.244 4.244 16 C 0.113 3.887 17 C -0.489 4.489 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.423 5.423 21 Si 0.735 3.265 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.181 4.181 26 C -0.103 4.103 27 C 0.018 3.982 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.233 0.767 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.138 0.862 49 H 0.106 0.894 50 H 0.075 0.925 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.649 9.814 4.312 18.153 hybrid contribution 1.282 0.246 0.304 1.340 sum -13.367 10.060 4.616 17.355 Atomic orbital electron populations 1.21865 0.93796 1.02098 1.01825 1.20721 0.95759 0.95705 0.95546 1.22412 1.02195 0.95239 1.01498 1.21108 0.96511 1.00361 0.96168 1.20669 0.94495 1.01860 0.99870 1.21311 0.98560 1.02419 0.95647 1.21704 0.91414 0.96097 0.92945 1.46827 1.09454 1.15794 1.63893 1.16123 0.83358 0.81387 0.79294 1.90854 1.49888 1.56158 1.51284 1.45885 1.08179 1.19805 1.65096 1.19811 0.92771 0.81712 0.97886 1.19055 0.92383 1.14037 0.98367 1.20415 0.95149 0.98385 0.95202 1.21032 0.92811 1.11203 0.99388 1.17690 0.92900 0.88280 0.89846 1.19668 0.90711 1.12635 1.25913 0.90377 1.25918 1.01741 0.93798 0.92961 1.69794 1.36519 1.08743 1.27274 0.86214 0.81549 0.79768 0.78925 1.18436 1.19723 1.19958 1.21366 0.93663 1.04863 0.98209 1.20594 0.93656 0.99094 0.96981 1.21779 0.81173 0.99596 0.95677 0.92354 0.92521 0.92344 0.90697 0.92906 0.92475 0.91615 0.92075 0.92729 0.90596 0.91491 0.90756 0.90626 0.89622 0.76680 0.92627 0.92696 0.89388 0.88888 0.90921 0.86196 0.89364 0.92538 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.15 37.16 0.30 -0.75 16 2 C -0.08 -0.67 0.75 -154.89 -0.12 -0.79 16 3 C -0.16 -1.17 6.75 37.16 0.25 -0.92 16 4 C -0.10 -0.99 4.90 -28.02 -0.14 -1.13 16 5 C -0.13 -1.18 4.99 -29.79 -0.15 -1.33 16 6 C -0.14 -1.43 5.74 -28.58 -0.16 -1.59 16 7 C 0.10 1.10 5.06 -4.09 -0.02 1.08 16 8 N -0.62 -8.13 2.23 -178.05 -0.40 -8.52 16 9 C 0.70 11.77 8.22 -86.91 -0.71 11.06 16 10 O -0.60 -12.24 15.62 5.30 0.08 -12.16 16 11 N -0.73 -12.30 5.38 -66.41 -0.36 -12.66 16 12 C 0.20 3.73 5.79 -5.19 -0.03 3.70 16 13 C -0.24 -4.90 5.27 -104.33 -0.55 -5.45 16 14 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 15 C -0.22 -5.27 9.80 -38.87 -0.38 -5.65 16 16 C 0.12 2.95 5.55 -106.83 -0.59 2.36 16 17 C -0.46 -11.78 9.06 -37.74 -0.34 -12.12 16 18 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 19 C 0.07 1.77 5.25 -17.34 -0.09 1.68 16 20 N -0.80 -19.89 10.85 55.55 0.60 -19.29 16 21 Si 0.91 18.17 29.57 -169.99 -5.03 13.15 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.16 -4.02 8.66 -38.87 -0.34 -4.35 16 26 C -0.08 -1.87 9.67 -39.66 -0.38 -2.26 16 27 C 0.14 1.61 5.02 -2.76 -0.01 1.60 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.57 3.15 -51.93 -0.16 0.40 16 32 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 34 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 35 H 0.06 0.53 7.74 -51.92 -0.40 0.13 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.59 4.67 -51.93 -0.24 0.35 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.86 6.23 -51.93 -0.32 0.54 16 41 H 0.09 0.77 5.22 -51.93 -0.27 0.50 16 42 H 0.40 6.27 6.08 -40.82 -0.25 6.03 16 43 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 44 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 45 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 46 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 47 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 48 H 0.12 3.11 6.22 -52.49 -0.33 2.78 16 49 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 50 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 51 H 0.09 1.21 6.78 -51.93 -0.35 0.86 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -27.95 386.15 -11.28 -39.24 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.15 Total: 11.22 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -3.85 Total: -16.79 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.15 Total: -40.47 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.95 -11.28 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576983404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.658 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds