Wall clock time and date at job start Tue Mar 31 2020 15:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.26531 * 2 1 4 4 C 1.50882 * 109.36702 * 119.68170 * 2 1 3 5 5 C 1.52564 * 109.35978 * 212.07920 * 4 2 1 6 6 C 1.47097 * 114.32665 * 274.98703 * 5 4 2 7 7 C 1.54858 * 110.32245 * 62.79819 * 6 5 4 8 8 N 1.44585 * 109.60461 * 288.73725 * 7 6 5 9 9 C 1.34779 * 118.64248 * 270.70822 * 8 7 6 10 10 O 1.21578 * 119.99968 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00123 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99862 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46927 * 180.02562 * 12 11 9 14 14 C 1.38628 * 119.74832 * 89.99572 * 13 12 11 15 15 C 1.37623 * 120.24561 * 179.70480 * 14 13 12 16 16 C 1.40713 * 119.74300 * 0.27022 * 15 14 13 17 17 C 1.41402 * 120.24056 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00027 * 28.65232 * 17 16 15 19 19 C 1.39945 * 119.99738 * 208.65948 * 17 16 15 20 20 N 1.30825 * 120.00129 * 10.99447 * 19 17 16 21 21 Si 1.86799 * 119.99941 * 191.00643 * 19 17 16 22 22 H 1.48500 * 109.47101 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47830 * 119.99669 * 21 19 17 24 24 H 1.48502 * 109.47005 * 239.99789 * 21 19 17 25 25 C 1.40707 * 119.51497 * 0.02562 * 16 15 14 26 26 C 1.37623 * 119.74672 * 359.97438 * 25 16 15 27 27 C 1.47603 * 122.71384 * 90.98037 * 8 7 6 28 28 H 1.08997 * 109.46886 * 300.32480 * 1 2 3 29 29 H 1.09006 * 109.46727 * 60.32096 * 1 2 3 30 30 H 1.08992 * 109.46891 * 180.31952 * 1 2 3 31 31 H 1.09000 * 109.47715 * 180.08554 * 3 2 1 32 32 H 1.09001 * 109.47118 * 300.08533 * 3 2 1 33 33 H 1.09002 * 109.47472 * 60.07860 * 3 2 1 34 34 H 1.08995 * 109.49153 * 92.10909 * 4 2 1 35 35 H 1.09008 * 109.48820 * 332.04066 * 4 2 1 36 36 H 1.09002 * 108.51587 * 153.73421 * 5 4 2 37 37 H 1.09001 * 108.51533 * 36.24028 * 5 4 2 38 38 H 1.09005 * 109.32352 * 302.54091 * 6 5 4 39 39 H 1.08996 * 109.19209 * 182.97824 * 6 5 4 40 40 H 1.09006 * 109.45309 * 168.69864 * 7 6 5 41 41 H 1.08993 * 109.43044 * 48.76283 * 7 6 5 42 42 H 0.97003 * 119.99528 * 0.02562 * 11 9 8 43 43 H 1.08992 * 109.47233 * 59.99750 * 12 11 9 44 44 H 1.09001 * 109.46810 * 299.99394 * 12 11 9 45 45 H 1.08006 * 119.88312 * 359.97438 * 14 13 12 46 46 H 1.07999 * 120.12546 * 180.30038 * 15 14 13 47 47 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 48 48 H 1.07999 * 120.13065 * 180.02562 * 25 16 15 49 49 H 1.08000 * 119.87923 * 180.02562 * 26 25 16 50 50 H 1.09003 * 108.94179 * 78.29953 * 27 8 7 51 51 H 1.08996 * 108.94785 * 196.92881 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2367 5 6 3.3487 -0.0767 1.6784 6 6 4.5357 -0.6192 0.9998 7 6 4.4646 -0.3320 -0.5202 8 7 3.4427 -1.1587 -1.1228 9 6 3.7848 -2.3808 -1.5764 10 8 2.9452 -3.0967 -2.0870 11 7 5.0577 -2.8094 -1.4641 12 6 5.4296 -4.1377 -1.9578 13 6 6.8983 -4.3713 -1.7133 14 6 7.3141 -4.9497 -0.5241 15 6 8.6522 -5.1733 -0.2927 16 6 9.5998 -4.8073 -1.2664 17 6 10.9772 -5.0327 -1.0399 18 1 11.2939 -5.8481 -0.4066 19 6 11.9300 -4.1990 -1.6362 20 7 11.5546 -3.0913 -2.2225 21 14 13.7377 -4.6680 -1.5955 22 1 13.8983 -5.9580 -0.8776 23 1 14.2444 -4.8075 -2.9843 24 1 14.5075 -3.6110 -0.8916 25 6 9.1666 -4.2153 -2.4671 26 6 7.8234 -4.0010 -2.6772 27 6 2.0417 -0.7171 -1.2668 28 1 -0.3633 0.5189 0.8870 29 1 -0.3633 0.5089 -0.8929 30 1 -0.3633 -1.0276 0.0057 31 1 3.1248 1.4483 -0.0015 32 1 1.6684 1.9573 -0.8892 33 1 1.6708 1.9565 0.8907 34 1 2.1866 -1.7606 1.0154 35 1 1.2946 -0.6052 2.0348 36 1 3.4630 -0.2304 2.7514 37 1 3.3017 0.9957 1.4890 38 1 4.5831 -1.6961 1.1617 39 1 5.4296 -0.1526 1.4138 40 1 5.4285 -0.5556 -0.9774 41 1 4.2222 0.7186 -0.6798 42 1 5.7275 -2.2384 -1.0564 43 1 5.2246 -4.1986 -3.0265 44 1 4.8491 -4.8961 -1.4326 45 1 6.5851 -5.2299 0.2219 46 1 8.9737 -5.6285 0.6324 47 1 12.2150 -2.5137 -2.6361 48 1 9.8852 -3.9308 -3.2215 49 1 7.4885 -3.5472 -3.5982 50 1 1.9705 -0.0371 -2.1158 51 1 1.4143 -1.5874 -1.4590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576983404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:38 Heat of formation + Delta-G solvation = -24.023894 kcal Electronic energy + Delta-G solvation = -28810.983239 eV Core-core repulsion = 25095.202808 eV Total energy + Delta-G solvation = -3715.780431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89176 -39.92255 -39.28031 -36.39670 -35.93393 -34.90643 -34.39078 -31.97809 -31.18341 -29.28140 -28.78749 -28.25858 -26.92172 -25.65046 -24.99364 -22.89942 -22.32120 -21.81276 -20.73890 -19.43173 -19.22834 -18.98028 -17.83745 -17.18762 -16.93800 -16.32577 -16.09802 -15.95214 -15.61564 -15.34804 -15.22946 -15.01900 -14.66703 -14.31251 -14.18034 -14.04826 -13.86554 -13.78907 -13.54246 -13.40206 -13.18998 -12.97626 -12.82201 -12.77744 -12.72181 -12.47520 -12.22959 -12.12046 -12.04904 -11.64592 -11.52160 -11.44749 -11.31932 -11.27806 -11.14517 -11.06619 -10.77839 -10.14500 -9.43709 -9.38861 -9.24618 -8.61194 -6.38536 0.81494 1.12569 1.39538 1.44526 1.53662 1.82949 2.15516 2.21336 2.71008 3.11726 3.65292 3.73546 3.78487 3.88322 3.97335 4.00858 4.14743 4.27256 4.31524 4.47422 4.50181 4.52339 4.57404 4.65041 4.66079 4.76398 4.77678 4.80258 4.87852 4.90131 5.04101 5.05267 5.15823 5.16160 5.19560 5.23227 5.25864 5.33630 5.34914 5.42327 5.43108 5.44338 5.54597 5.61796 5.69142 5.72208 5.87161 5.99231 6.09572 6.19516 6.36241 6.68491 6.93108 6.98716 7.02481 7.57468 8.34700 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002477 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.774389 B =11301.511403 C =11782.962440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.098 3.902 8 N -0.613 5.613 9 C 0.693 3.307 10 O -0.640 6.640 11 N -0.730 5.730 12 C 0.211 3.789 13 C -0.219 4.219 14 C -0.070 4.070 15 C -0.237 4.237 16 C 0.086 3.914 17 C -0.496 4.496 18 H 0.075 0.925 19 C 0.033 3.967 20 N -0.827 5.827 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.266 1.266 24 H -0.266 1.266 25 C -0.182 4.182 26 C -0.084 4.084 27 C 0.137 3.863 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.403 0.597 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.287 0.713 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.067 0.933 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 12.040 5.721 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.210 4.210 4 C -0.140 4.140 5 C -0.168 4.168 6 C -0.175 4.175 7 C -0.026 4.026 8 N -0.348 5.348 9 C 0.394 3.606 10 O -0.523 6.523 11 N -0.386 5.386 12 C 0.087 3.913 13 C -0.221 4.221 14 C -0.088 4.088 15 C -0.256 4.256 16 C 0.083 3.917 17 C -0.526 4.526 18 H 0.093 0.907 19 C -0.181 4.181 20 N -0.454 5.454 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.202 4.202 26 C -0.103 4.103 27 C 0.015 3.985 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.240 0.760 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.085 0.915 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.310 11.755 5.236 20.000 hybrid contribution 1.308 -0.319 0.029 1.347 sum -14.002 11.437 5.265 18.830 Atomic orbital electron populations 1.21857 0.92785 1.01762 1.02973 1.20690 0.96499 0.96341 0.93552 1.22374 1.02074 0.93865 1.02689 1.21095 0.97418 0.98516 0.96957 1.20677 0.93379 1.02843 0.99904 1.21278 0.99942 1.00965 0.95272 1.21928 0.90431 0.97039 0.93156 1.46884 1.10634 1.14564 1.62766 1.16260 0.82749 0.82307 0.79236 1.90826 1.50773 1.57607 1.53074 1.45625 1.08550 1.19239 1.65221 1.19592 0.91082 0.82752 0.97844 1.19218 0.93241 1.12150 0.97500 1.20657 0.94833 0.97505 0.95848 1.21206 0.93523 1.11483 0.99392 1.18011 0.93691 0.89304 0.90654 1.19889 0.91549 1.13577 1.27553 0.90693 1.26721 1.05910 0.93323 0.92150 1.69846 1.38187 1.09513 1.27818 0.85144 0.75945 0.79448 0.79100 1.18327 1.19051 1.19060 1.21299 0.94458 1.06390 0.98039 1.20757 0.92941 0.98688 0.97912 1.21946 0.79804 0.98977 0.97773 0.90828 0.91729 0.93495 0.90737 0.92130 0.90970 0.94823 0.90868 0.92300 0.88568 0.94048 0.89406 0.91285 0.86999 0.76001 0.92916 0.92618 0.86903 0.88272 0.90217 0.87934 0.87854 0.91500 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.15 71.98 0.59 -1.22 16 2 C -0.07 -1.09 0.75 -52.43 -0.04 -1.13 16 3 C -0.15 -1.74 6.75 71.98 0.49 -1.25 16 4 C -0.10 -1.79 4.90 29.76 0.15 -1.65 16 5 C -0.13 -2.03 4.99 28.61 0.14 -1.89 16 6 C -0.14 -2.54 5.74 29.39 0.17 -2.37 16 7 C 0.10 1.92 5.06 87.37 0.44 2.36 16 8 N -0.61 -15.50 2.23 -835.48 -1.86 -17.36 16 9 C 0.69 23.32 8.22 179.05 1.47 24.79 16 10 O -0.64 -26.33 15.62 -3.96 -0.06 -26.39 16 11 N -0.73 -24.11 5.38 -482.30 -2.60 -26.70 16 12 C 0.21 7.69 5.79 85.64 0.50 8.19 16 13 C -0.22 -8.96 5.27 -19.67 -0.10 -9.06 16 14 C -0.07 -2.92 9.67 22.22 0.21 -2.71 16 15 C -0.24 -11.20 9.80 22.73 0.22 -10.97 16 16 C 0.09 4.50 5.55 -21.29 -0.12 4.39 16 17 C -0.50 -26.14 9.06 23.46 0.21 -25.93 16 18 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 19 C 0.03 1.64 5.25 85.26 0.45 2.08 16 20 N -0.83 -42.09 10.85 21.83 0.24 -41.85 16 21 Si 0.98 37.49 29.57 68.60 2.03 39.52 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 25 C -0.18 -9.31 8.66 22.73 0.20 -9.11 16 26 C -0.08 -3.75 9.67 22.22 0.21 -3.54 16 27 C 0.14 3.02 5.02 86.61 0.44 3.46 16 28 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.84 3.15 -2.39 -0.01 0.83 16 32 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.07 0.65 7.92 -2.39 -0.02 0.63 16 34 H 0.03 0.81 7.49 -2.39 -0.02 0.79 16 35 H 0.07 1.11 7.74 -2.38 -0.02 1.09 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 1.14 4.67 -2.39 -0.01 1.13 16 38 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.48 6.23 -2.38 -0.01 1.46 16 41 H 0.11 1.66 5.22 -2.39 -0.01 1.65 16 42 H 0.40 12.44 6.08 -92.71 -0.56 11.88 16 43 H 0.05 1.97 8.08 -2.39 -0.02 1.96 16 44 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 45 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 46 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 48 H 0.10 5.53 6.22 -2.91 -0.02 5.51 16 49 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 50 H 0.07 1.33 7.98 -2.39 -0.02 1.32 16 51 H 0.06 1.76 6.78 -2.39 -0.02 1.75 16 Total: -1.00 -62.11 386.15 3.73 -58.38 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.37 Total: 39.96 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 5.62 Total: -25.55 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -4.22 Total: -85.92 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.06 Total: -26.39 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -62.11 3.73 -58.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576983404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.359 kcal (2) G-P(sol) polarization free energy of solvation -62.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds