Wall clock time and date at job start Tue Mar 31 2020 15:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38288 * 119.96436 * 2 1 4 4 C 1.38275 * 120.14172 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96400 * 180.02562 * 4 3 2 6 6 C 1.38113 * 120.07052 * 359.97438 * 4 3 2 7 7 C 1.38866 * 119.93037 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07092 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00504 * 32.93037 * 8 7 6 10 10 O 1.21295 * 119.99773 * 4.79458 * 9 8 7 11 11 C 1.50694 * 120.00719 * 184.79776 * 9 8 7 12 12 N 1.46897 * 109.47681 * 174.26364 * 11 9 8 13 13 C 1.46842 * 111.00318 * 169.67393 * 12 11 9 14 14 C 1.53034 * 109.52328 * 185.84131 * 13 12 11 15 15 C 1.53120 * 109.27847 * 300.81287 * 14 13 12 16 16 C 1.52999 * 109.57846 * 177.58983 * 15 14 13 17 17 C 1.50703 * 109.46967 * 65.28746 * 16 15 14 18 18 H 1.08006 * 119.99575 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00144 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00367 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00139 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47120 * 89.99841 * 21 19 17 23 23 H 1.48497 * 109.46935 * 210.00167 * 21 19 17 24 24 H 1.48501 * 109.46799 * 330.00202 * 21 19 17 25 25 C 1.53129 * 109.15925 * 57.65639 * 15 14 13 26 26 C 1.46851 * 110.99973 * 293.88105 * 12 11 9 27 27 C 1.38105 * 119.96723 * 180.25240 * 2 1 3 28 28 H 1.08998 * 109.46799 * 89.99989 * 1 2 3 29 29 H 1.08995 * 109.46969 * 210.00189 * 1 2 3 30 30 H 1.09003 * 109.47415 * 330.00444 * 1 2 3 31 31 H 1.08002 * 119.92988 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47117 * 269.97327 * 5 4 3 33 33 H 1.09000 * 109.47195 * 29.97805 * 5 4 3 34 34 H 1.09005 * 109.47076 * 149.98094 * 5 4 3 35 35 H 1.08005 * 120.03363 * 180.02562 * 6 4 3 36 36 H 0.97011 * 119.99990 * 212.92849 * 8 7 6 37 37 H 1.08998 * 109.47353 * 294.26753 * 11 9 8 38 38 H 1.09008 * 109.47152 * 54.26293 * 11 9 8 39 39 H 1.09005 * 109.46067 * 305.85040 * 13 12 11 40 40 H 1.08992 * 109.46578 * 65.82129 * 13 12 11 41 41 H 1.08999 * 109.50384 * 180.87817 * 14 13 12 42 42 H 1.09002 * 109.50800 * 60.75666 * 14 13 12 43 43 H 1.08994 * 109.52532 * 297.75509 * 15 14 13 44 44 H 1.08996 * 109.47497 * 185.28743 * 16 15 14 45 45 H 1.08999 * 109.47332 * 305.28972 * 16 15 14 46 46 H 0.96994 * 120.00952 * 180.02562 * 20 19 17 47 47 H 1.08989 * 109.50233 * 182.40465 * 25 15 14 48 48 H 1.08998 * 109.49852 * 62.28499 * 25 15 14 49 49 H 1.09001 * 109.46260 * 294.17566 * 26 12 11 50 50 H 1.09001 * 109.46224 * 54.14758 * 26 12 11 51 51 H 1.08002 * 120.03695 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5804 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2762 0.0092 0.0016 7 6 3.5856 -1.1955 0.0016 8 7 4.2875 -2.4060 0.0021 9 6 5.4727 -2.4975 0.6371 10 8 5.8900 -1.5579 1.2808 11 6 6.2797 -3.7670 0.5473 12 7 7.5794 -3.5685 1.2026 13 6 8.2932 -4.8430 1.3526 14 6 9.5708 -4.6210 2.1652 15 6 10.4567 -3.6001 1.4457 16 6 11.7085 -3.3279 2.2822 17 6 12.5415 -4.5813 2.3622 18 1 12.2112 -5.4817 1.8657 19 6 13.7252 -4.5784 3.0691 20 7 14.4524 -5.6720 3.1385 21 14 14.2962 -3.0211 3.9284 22 1 13.7579 -2.9935 5.3121 23 1 15.7802 -2.9966 3.9739 24 1 13.8041 -1.8352 3.1822 25 6 9.6730 -2.2979 1.2590 26 6 8.3924 -2.5873 0.4728 27 6 2.1969 -1.1964 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6560 2.1324 -0.0004 32 1 4.5104 2.8256 -1.0264 33 1 3.7368 3.2677 0.5145 34 1 5.2817 2.3834 0.5156 35 1 5.3562 0.0133 0.0024 36 1 3.9209 -3.1794 -0.4545 37 1 5.7423 -4.5750 1.0436 38 1 6.4366 -4.0246 -0.5002 39 1 7.6539 -5.5587 1.8694 40 1 8.5521 -5.2323 0.3680 41 1 10.1084 -5.5641 2.2631 42 1 9.3119 -4.2447 3.1549 43 1 10.7477 -3.9928 0.4716 44 1 12.2914 -2.5335 1.8160 45 1 11.4152 -3.0219 3.2864 46 1 15.2849 -5.6702 3.6362 47 1 10.2834 -1.5814 0.7095 48 1 9.4156 -1.8851 2.2344 49 1 8.6508 -2.9872 -0.5078 50 1 7.8250 -1.6646 0.3506 51 1 1.6569 -2.1318 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579953297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:14 Heat of formation + Delta-G solvation = -24.088438 kcal Electronic energy + Delta-G solvation = -27828.129267 eV Core-core repulsion = 24112.346037 eV Total energy + Delta-G solvation = -3715.783230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86734 -39.34550 -38.20272 -35.27777 -34.50441 -33.77783 -32.29345 -31.00687 -30.39537 -29.13157 -27.55891 -27.02011 -26.46330 -23.65469 -22.63917 -22.20045 -21.36041 -20.48224 -20.16470 -18.98328 -17.57590 -16.99512 -16.68695 -16.44252 -15.95915 -15.41226 -15.21848 -14.61299 -14.36636 -14.27768 -14.14403 -13.83073 -13.61312 -13.50140 -13.26020 -13.10472 -12.90364 -12.82103 -12.76567 -12.46788 -12.19600 -12.06732 -11.88641 -11.74276 -11.63177 -11.37859 -11.30831 -10.96305 -10.68928 -10.54393 -10.41260 -10.13189 -9.90302 -9.71430 -9.54587 -9.19238 -8.94150 -8.80310 -8.47664 -8.31798 -8.17310 -5.98870 -3.95491 1.02949 1.12977 2.43074 2.68909 3.36006 3.43016 3.48093 3.51171 4.01246 4.40313 4.48817 4.51170 4.57671 4.86871 4.97325 4.99812 5.05462 5.07877 5.10333 5.22854 5.29028 5.32205 5.34557 5.39434 5.41987 5.46987 5.54218 5.55383 5.66664 5.69486 5.84986 5.85929 5.92223 6.07054 6.07536 6.13987 6.25563 6.31720 6.36299 6.41721 6.51387 6.61706 6.82370 6.89810 6.97083 7.04429 7.06958 7.24832 7.29072 7.38865 7.55747 7.87041 7.96154 8.60290 9.06027 9.64851 11.14483 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002127 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.089824 B =13159.411067 C =14050.917706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.062 4.062 5 C -0.115 4.115 6 C -0.128 4.128 7 C 0.161 3.839 8 N -0.681 5.681 9 C 0.511 3.489 10 O -0.490 6.490 11 C 0.038 3.962 12 N -0.520 5.520 13 C 0.058 3.942 14 C -0.101 4.101 15 C -0.074 4.074 16 C -0.009 4.009 17 C -0.513 4.513 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.266 1.266 25 C -0.111 4.111 26 C 0.057 3.943 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.012 0.988 46 H 0.261 0.739 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.025 0.975 50 H 0.077 0.923 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.161 9.845 -10.214 32.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.160 4.160 4 C -0.063 4.063 5 C -0.172 4.172 6 C -0.148 4.148 7 C 0.066 3.934 8 N -0.328 5.328 9 C 0.298 3.702 10 O -0.362 6.362 11 C -0.094 4.094 12 N -0.245 5.245 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.092 4.092 16 C -0.047 4.047 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.190 1.190 25 C -0.149 4.149 26 C -0.070 4.070 27 C -0.177 4.177 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.245 0.755 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.095 0.905 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.674 10.589 -9.184 31.916 hybrid contribution 0.350 -0.138 -0.518 0.640 sum -28.323 10.451 -9.701 31.710 Atomic orbital electron populations 1.20777 0.91005 1.02839 1.02306 1.19639 0.95871 0.92494 0.98612 1.20868 0.93462 0.97493 1.04136 1.19794 0.93599 0.95104 0.97800 1.20808 1.00314 0.93715 1.02370 1.21042 1.00916 0.90380 1.02465 1.17683 0.90700 0.85760 0.99224 1.43644 1.21767 1.12307 1.55051 1.20937 0.80603 0.90505 0.78120 1.90737 1.68457 1.39191 1.37806 1.21930 0.92913 0.95028 0.99503 1.61657 1.01787 1.10865 1.50168 1.22241 0.96339 0.89120 0.99233 1.21556 0.92763 1.00909 0.98600 1.21069 0.95500 0.93395 0.99252 1.19611 0.92826 0.97459 0.94763 1.21157 1.04712 0.96948 1.32250 0.90983 1.25030 0.96544 0.95903 0.96142 1.69912 1.14549 1.27445 1.42687 0.86800 0.77524 0.84694 0.80413 1.20352 1.21576 1.19034 1.21679 0.94140 0.98657 1.00446 1.22208 0.95007 0.95528 0.94293 1.20695 0.91940 0.98299 1.06789 0.91139 0.91553 0.91445 0.86152 0.91091 0.91464 0.91125 0.84736 0.75540 0.87632 0.91992 0.91274 0.95059 0.90173 0.91747 0.92462 0.96762 0.96944 0.92886 0.92190 0.91423 0.95671 0.90510 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.07 -0.55 5.88 -104.65 -0.62 -1.16 16 3 C -0.14 -1.25 9.35 -39.55 -0.37 -1.62 16 4 C -0.06 -0.63 5.88 -104.65 -0.62 -1.25 16 5 C -0.12 -0.94 10.01 36.01 0.36 -0.58 16 6 C -0.13 -1.50 8.31 -39.39 -0.33 -1.83 16 7 C 0.16 1.68 6.29 -83.70 -0.53 1.16 16 8 N -0.68 -6.12 5.34 -9.87 -0.05 -6.17 16 9 C 0.51 6.04 7.12 -10.99 -0.08 5.96 16 10 O -0.49 -7.79 12.30 5.54 0.07 -7.72 16 11 C 0.04 0.40 5.45 -4.98 -0.03 0.37 16 12 N -0.52 -7.52 4.35 -236.12 -1.03 -8.55 16 13 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 14 C -0.10 -1.87 5.15 -26.65 -0.14 -2.00 16 15 C -0.07 -1.48 2.20 -90.49 -0.20 -1.68 16 16 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 17 C -0.51 -14.54 9.00 -34.44 -0.31 -14.85 16 18 H 0.07 2.17 7.33 -52.48 -0.38 1.79 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 20 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 21 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 25 C -0.11 -1.96 5.38 -26.65 -0.14 -2.11 16 26 C 0.06 0.87 5.11 -3.83 -0.02 0.85 16 27 C -0.16 -1.37 9.62 -39.39 -0.38 -1.75 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.13 1.79 6.37 -52.48 -0.33 1.45 16 36 H 0.41 2.19 8.82 -40.82 -0.36 1.84 16 37 H 0.11 0.88 7.98 -51.93 -0.41 0.47 16 38 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 39 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 1.62 7.06 -51.93 -0.37 1.25 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 45 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.06 1.01 8.14 -51.94 -0.42 0.59 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 1.19 6.01 -51.93 -0.31 0.88 16 51 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -34.02 399.75 -10.98 -45.00 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.85 Total: -0.35 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.24 Total: -18.45 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.31 Total: -42.09 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.02 -10.98 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579953297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.913 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds