Wall clock time and date at job start Tue Mar 31 2020 15:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38288 * 119.96436 * 2 1 4 4 C 1.38275 * 120.14172 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96400 * 180.02562 * 4 3 2 6 6 C 1.38113 * 120.07052 * 359.97438 * 4 3 2 7 7 C 1.38866 * 119.93037 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07092 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00504 * 32.93037 * 8 7 6 10 10 O 1.21295 * 119.99773 * 4.79458 * 9 8 7 11 11 C 1.50694 * 120.00719 * 184.79776 * 9 8 7 12 12 N 1.46897 * 109.47681 * 174.26364 * 11 9 8 13 13 C 1.46842 * 111.00318 * 169.67393 * 12 11 9 14 14 C 1.53034 * 109.52328 * 185.84131 * 13 12 11 15 15 C 1.53120 * 109.27847 * 300.81287 * 14 13 12 16 16 C 1.52999 * 109.57846 * 177.58983 * 15 14 13 17 17 C 1.50703 * 109.46967 * 65.28746 * 16 15 14 18 18 H 1.08006 * 119.99575 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00144 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00367 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00139 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47120 * 89.99841 * 21 19 17 23 23 H 1.48497 * 109.46935 * 210.00167 * 21 19 17 24 24 H 1.48501 * 109.46799 * 330.00202 * 21 19 17 25 25 C 1.53129 * 109.15925 * 57.65639 * 15 14 13 26 26 C 1.46851 * 110.99973 * 293.88105 * 12 11 9 27 27 C 1.38105 * 119.96723 * 180.25240 * 2 1 3 28 28 H 1.08998 * 109.46799 * 89.99989 * 1 2 3 29 29 H 1.08995 * 109.46969 * 210.00189 * 1 2 3 30 30 H 1.09003 * 109.47415 * 330.00444 * 1 2 3 31 31 H 1.08002 * 119.92988 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47117 * 269.97327 * 5 4 3 33 33 H 1.09000 * 109.47195 * 29.97805 * 5 4 3 34 34 H 1.09005 * 109.47076 * 149.98094 * 5 4 3 35 35 H 1.08005 * 120.03363 * 180.02562 * 6 4 3 36 36 H 0.97011 * 119.99990 * 212.92849 * 8 7 6 37 37 H 1.08998 * 109.47353 * 294.26753 * 11 9 8 38 38 H 1.09008 * 109.47152 * 54.26293 * 11 9 8 39 39 H 1.09005 * 109.46067 * 305.85040 * 13 12 11 40 40 H 1.08992 * 109.46578 * 65.82129 * 13 12 11 41 41 H 1.08999 * 109.50384 * 180.87817 * 14 13 12 42 42 H 1.09002 * 109.50800 * 60.75666 * 14 13 12 43 43 H 1.08994 * 109.52532 * 297.75509 * 15 14 13 44 44 H 1.08996 * 109.47497 * 185.28743 * 16 15 14 45 45 H 1.08999 * 109.47332 * 305.28972 * 16 15 14 46 46 H 0.96994 * 120.00952 * 180.02562 * 20 19 17 47 47 H 1.08989 * 109.50233 * 182.40465 * 25 15 14 48 48 H 1.08998 * 109.49852 * 62.28499 * 25 15 14 49 49 H 1.09001 * 109.46260 * 294.17566 * 26 12 11 50 50 H 1.09001 * 109.46224 * 54.14758 * 26 12 11 51 51 H 1.08002 * 120.03695 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5804 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2762 0.0092 0.0016 7 6 3.5856 -1.1955 0.0016 8 7 4.2875 -2.4060 0.0021 9 6 5.4727 -2.4975 0.6371 10 8 5.8900 -1.5579 1.2808 11 6 6.2797 -3.7670 0.5473 12 7 7.5794 -3.5685 1.2026 13 6 8.2932 -4.8430 1.3526 14 6 9.5708 -4.6210 2.1652 15 6 10.4567 -3.6001 1.4457 16 6 11.7085 -3.3279 2.2822 17 6 12.5415 -4.5813 2.3622 18 1 12.2112 -5.4817 1.8657 19 6 13.7252 -4.5784 3.0691 20 7 14.4524 -5.6720 3.1385 21 14 14.2962 -3.0211 3.9284 22 1 13.7579 -2.9935 5.3121 23 1 15.7802 -2.9966 3.9739 24 1 13.8041 -1.8352 3.1822 25 6 9.6730 -2.2979 1.2590 26 6 8.3924 -2.5873 0.4728 27 6 2.1969 -1.1964 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6560 2.1324 -0.0004 32 1 4.5104 2.8256 -1.0264 33 1 3.7368 3.2677 0.5145 34 1 5.2817 2.3834 0.5156 35 1 5.3562 0.0133 0.0024 36 1 3.9209 -3.1794 -0.4545 37 1 5.7423 -4.5750 1.0436 38 1 6.4366 -4.0246 -0.5002 39 1 7.6539 -5.5587 1.8694 40 1 8.5521 -5.2323 0.3680 41 1 10.1084 -5.5641 2.2631 42 1 9.3119 -4.2447 3.1549 43 1 10.7477 -3.9928 0.4716 44 1 12.2914 -2.5335 1.8160 45 1 11.4152 -3.0219 3.2864 46 1 15.2849 -5.6702 3.6362 47 1 10.2834 -1.5814 0.7095 48 1 9.4156 -1.8851 2.2344 49 1 8.6508 -2.9872 -0.5078 50 1 7.8250 -1.6646 0.3506 51 1 1.6569 -2.1318 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579953297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:13 Heat of formation + Delta-G solvation = -44.994570 kcal Electronic energy + Delta-G solvation = -27829.035824 eV Core-core repulsion = 24112.346037 eV Total energy + Delta-G solvation = -3716.689788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69472 -40.28635 -39.31808 -36.26392 -35.91245 -34.40435 -34.29043 -31.89834 -31.72490 -30.60713 -28.28880 -27.71397 -27.63662 -25.20531 -23.98273 -23.18004 -22.06713 -22.03484 -20.95397 -20.50048 -18.87637 -18.36118 -17.84117 -17.17998 -16.79961 -16.55485 -16.34866 -16.02455 -15.65056 -15.33104 -15.22800 -14.87445 -14.77842 -14.53908 -14.35858 -14.14125 -14.00899 -13.93953 -13.79502 -13.38457 -13.34533 -13.17256 -12.91083 -12.79835 -12.66956 -12.62731 -12.45599 -12.38471 -12.07505 -12.00360 -11.88222 -11.67500 -11.36385 -11.18463 -10.94928 -10.89605 -10.73531 -10.63162 -9.49091 -9.25666 -9.03249 -8.27002 -6.28340 0.30910 0.42697 1.34486 1.35316 1.47582 1.60029 1.91919 2.36578 2.81446 2.97651 3.08360 3.64043 3.90289 3.91752 3.96666 4.01538 4.06266 4.24117 4.28642 4.33780 4.37254 4.40588 4.42415 4.50335 4.57766 4.63546 4.68225 4.72103 4.77064 4.79274 4.88924 4.90099 4.92803 4.97397 5.01015 5.09924 5.10609 5.20504 5.27479 5.32938 5.39045 5.41368 5.45769 5.50429 5.65908 5.70647 5.71111 5.72763 6.04049 6.11408 6.13958 6.33368 6.48289 6.78055 7.17452 7.35287 8.89274 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002127 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.089824 B =13159.411067 C =14050.917706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.114 4.114 6 C -0.155 4.155 7 C 0.144 3.856 8 N -0.664 5.664 9 C 0.511 3.489 10 O -0.539 6.539 11 C 0.040 3.960 12 N -0.539 5.539 13 C 0.069 3.931 14 C -0.098 4.098 15 C -0.070 4.070 16 C -0.007 4.007 17 C -0.515 4.515 18 H 0.040 0.960 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.252 1.252 25 C -0.105 4.105 26 C 0.067 3.933 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.427 0.573 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.013 0.987 45 H 0.010 0.990 46 H 0.264 0.736 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.252 10.635 -10.984 35.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.165 4.165 4 C -0.077 4.077 5 C -0.170 4.170 6 C -0.176 4.176 7 C 0.049 3.951 8 N -0.312 5.312 9 C 0.299 3.701 10 O -0.414 6.414 11 C -0.090 4.090 12 N -0.264 5.264 13 C -0.058 4.058 14 C -0.136 4.136 15 C -0.088 4.088 16 C -0.044 4.044 17 C -0.553 4.553 18 H 0.058 0.942 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.176 1.176 25 C -0.143 4.143 26 C -0.061 4.061 27 C -0.177 4.177 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.267 0.733 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.093 0.907 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.814 11.360 -9.990 35.228 hybrid contribution 1.234 -0.422 -0.318 1.342 sum -30.581 10.938 -10.308 34.074 Atomic orbital electron populations 1.20832 0.88756 1.03750 1.03369 1.20067 0.97541 0.92133 0.97169 1.21160 0.92976 0.98806 1.03581 1.20050 0.94536 0.95226 0.97924 1.20822 0.99707 0.93496 1.03019 1.21018 0.99963 0.91914 1.04656 1.17873 0.91589 0.85716 0.99878 1.43448 1.20858 1.12644 1.54239 1.21205 0.81083 0.90294 0.77536 1.90731 1.69702 1.40815 1.40161 1.22040 0.90741 0.95086 1.01159 1.61512 1.03075 1.10387 1.51428 1.22072 0.94729 0.89809 0.99178 1.21441 0.94546 0.98947 0.98694 1.20975 0.94419 0.95293 0.98153 1.19576 0.94136 0.95287 0.95439 1.21434 1.05154 0.97443 1.31266 0.94177 1.25928 0.96849 0.99298 0.97181 1.70050 1.15275 1.29781 1.44091 0.85762 0.77246 0.80814 0.79460 1.19544 1.20917 1.17619 1.21574 0.95298 0.97091 1.00334 1.22034 0.93763 0.96044 0.94256 1.20988 0.91193 0.99664 1.05897 0.89866 0.90610 0.90636 0.84189 0.90095 0.89962 0.92569 0.87239 0.73348 0.84750 0.89194 0.88814 0.94083 0.92704 0.93021 0.93101 0.96901 0.97190 0.92682 0.91704 0.92803 0.94580 0.90733 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.07 -0.98 5.88 -19.88 -0.12 -1.10 16 3 C -0.15 -2.37 9.35 22.29 0.21 -2.16 16 4 C -0.08 -1.54 5.88 -19.88 -0.12 -1.66 16 5 C -0.11 -1.85 10.01 71.24 0.71 -1.14 16 6 C -0.16 -3.71 8.31 22.39 0.19 -3.52 16 7 C 0.14 2.86 6.29 38.15 0.24 3.10 16 8 N -0.66 -10.74 5.34 -303.51 -1.62 -12.36 16 9 C 0.51 11.35 7.12 87.66 0.62 11.98 16 10 O -0.54 -17.20 12.30 -3.08 -0.04 -17.24 16 11 C 0.04 0.73 5.45 85.56 0.47 1.20 16 12 N -0.54 -14.62 4.35 -900.96 -3.92 -18.55 16 13 C 0.07 1.91 5.46 86.33 0.47 2.38 16 14 C -0.10 -3.69 5.15 30.65 0.16 -3.53 16 15 C -0.07 -2.83 2.20 -10.71 -0.02 -2.85 16 16 C -0.01 -0.34 3.52 29.85 0.11 -0.24 16 17 C -0.51 -30.07 9.00 25.60 0.23 -29.84 16 18 H 0.04 2.53 7.33 -2.91 -0.02 2.51 16 19 C 0.00 0.23 5.47 84.65 0.46 0.69 16 20 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 21 Si 0.94 46.20 27.47 68.60 1.88 48.08 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 25 C -0.11 -3.68 5.38 30.65 0.16 -3.52 16 26 C 0.07 1.96 5.11 86.32 0.44 2.41 16 27 C -0.16 -2.40 9.62 22.39 0.22 -2.18 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 30 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 31 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.06 1.05 8.08 -2.38 -0.02 1.03 16 35 H 0.11 3.11 6.37 -2.91 -0.02 3.10 16 36 H 0.43 3.35 8.82 -92.70 -0.82 2.53 16 37 H 0.13 1.69 7.98 -2.39 -0.02 1.67 16 38 H 0.09 1.20 8.12 -2.38 -0.02 1.18 16 39 H 0.09 2.14 8.01 -2.38 -0.02 2.12 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 2.30 7.06 -2.39 -0.02 2.28 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 45 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 46 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 2.28 6.01 -2.39 -0.01 2.27 16 51 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -76.74 399.75 1.78 -74.96 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.03 Total: 15.46 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 5.14 Total: -30.14 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -5.25 Total: -91.13 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.04 Total: -17.24 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -76.74 1.78 -74.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579953297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.966 kcal (2) G-P(sol) polarization free energy of solvation -76.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds