Wall clock time and date at job start Tue Mar 31 2020 16:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 5 5 O 1.21281 * 119.99699 * 119.99828 * 4 2 1 6 6 N 1.34773 * 120.00080 * 300.00319 * 4 2 1 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.46722 * 324.72200 * 7 6 4 9 9 C 1.52999 * 109.47091 * 204.72183 * 7 6 4 10 10 C 1.53005 * 109.47150 * 64.99957 * 9 7 6 11 11 C 1.50698 * 109.46971 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99813 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99998 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47002 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47529 * 119.99330 * 15 13 11 18 18 H 1.48494 * 109.47131 * 239.99550 * 15 13 11 19 19 C 1.50697 * 109.47063 * 84.72117 * 7 6 4 20 20 C 1.38225 * 120.00280 * 39.72688 * 19 7 6 21 21 C 1.38242 * 120.00274 * 179.78833 * 20 19 7 22 22 C 1.38235 * 119.99678 * 0.44149 * 21 20 19 23 23 C 1.38241 * 119.99910 * 359.81374 * 22 21 20 24 24 C 1.38233 * 120.00167 * 359.97438 * 23 22 21 25 25 N 1.46889 * 109.47191 * 239.99233 * 2 1 3 26 26 C 1.47486 * 111.00092 * 155.97284 * 25 2 1 27 27 C 1.53512 * 87.93511 * 221.30098 * 26 25 2 28 28 C 1.53002 * 114.16888 * 272.37942 * 27 26 25 29 29 C 1.47482 * 110.99998 * 60.00404 * 25 2 1 30 30 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 32 32 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 33 33 H 0.97005 * 120.00161 * 359.72088 * 6 4 2 34 34 H 1.08996 * 109.47238 * 184.99506 * 9 7 6 35 35 H 1.09004 * 109.47119 * 305.00046 * 9 7 6 36 36 H 1.09006 * 109.46641 * 299.99859 * 10 9 7 37 37 H 1.09000 * 109.47259 * 59.99588 * 10 9 7 38 38 H 0.97001 * 120.00065 * 180.02562 * 14 13 11 39 39 H 1.08000 * 120.00179 * 359.97438 * 20 19 7 40 40 H 1.07997 * 119.99864 * 180.27965 * 21 20 19 41 41 H 1.07997 * 120.00028 * 179.83877 * 22 21 20 42 42 H 1.07999 * 119.99589 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.00096 * 180.02562 * 24 23 22 44 44 H 1.08999 * 113.47371 * 336.06673 * 26 25 2 45 45 H 1.08997 * 113.47369 * 106.52980 * 26 25 2 46 46 H 1.08996 * 114.17371 * 139.67099 * 27 26 25 47 47 H 1.08998 * 109.46997 * 153.84433 * 28 27 26 48 48 H 1.09002 * 109.46625 * 273.84045 * 28 27 26 49 49 H 1.09001 * 109.47205 * 33.83665 * 28 27 26 50 50 H 1.08994 * 113.47847 * 253.47085 * 29 25 2 51 51 H 1.09010 * 113.47401 * 23.93789 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6509 8 1 2.2278 -2.0133 3.4633 9 6 1.2551 -0.6554 4.8238 10 6 -0.1180 -1.2663 4.5366 11 6 -1.0443 -0.9854 5.6917 12 1 -0.6890 -0.4273 6.5454 13 6 -2.3450 -1.4417 5.6590 14 7 -2.7773 -2.1216 4.6196 15 14 -3.4929 -1.0941 7.0910 16 1 -2.7686 -0.3171 8.1288 17 1 -4.6603 -0.3117 6.6111 18 1 -3.9623 -2.3776 7.6719 19 6 3.5794 -0.4465 3.9854 20 6 3.8855 0.8950 3.8534 21 6 5.1539 1.3484 4.1644 22 6 6.1187 0.4588 4.5987 23 6 5.8141 -0.8837 4.7256 24 6 4.5445 -1.3364 4.4188 25 7 2.0197 -0.6926 -1.1992 26 6 3.3815 -0.2467 -1.5481 27 6 2.9448 -0.2472 -3.0198 28 6 3.1182 -1.5942 -3.7243 29 6 1.5469 -0.0240 -2.4258 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.1523 0.5413 2.5436 34 1 1.6652 -1.0948 5.7331 35 1 1.1533 0.4220 4.9547 36 1 -0.5281 -0.8268 3.6273 37 1 -0.0162 -2.3436 4.4057 38 1 -3.6925 -2.4423 4.5964 39 1 3.1329 1.5894 3.5102 40 1 5.3917 2.3972 4.0656 41 1 7.1104 0.8125 4.8391 42 1 6.5678 -1.5786 5.0652 43 1 4.3064 -2.3850 4.5183 44 1 3.6244 0.7454 -1.1676 45 1 4.1511 -0.9851 -1.3233 46 1 3.3237 0.5954 -3.5981 47 1 2.4057 -1.6689 -4.5458 48 1 4.1328 -1.6718 -4.1150 49 1 2.9397 -2.4014 -3.0139 50 1 0.7617 -0.5735 -2.9449 51 1 1.3002 1.0277 -2.2795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581019933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:52 Heat of formation + Delta-G solvation = 11.105918 kcal Electronic energy + Delta-G solvation = -28826.496371 eV Core-core repulsion = 25112.239282 eV Total energy + Delta-G solvation = -3714.257088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78349 -39.61937 -38.36511 -35.62202 -33.67361 -33.10457 -31.39248 -30.68992 -30.34085 -29.44204 -26.70727 -26.23168 -25.21549 -23.82805 -23.02162 -22.38229 -21.10283 -20.09132 -19.80966 -19.11868 -17.23596 -16.90082 -16.53243 -16.16649 -15.60145 -15.27438 -15.08217 -14.62758 -14.48082 -14.32526 -14.01949 -13.53076 -13.41837 -13.23100 -13.14407 -13.02560 -12.81689 -12.52435 -12.24605 -12.15250 -12.04863 -11.94613 -11.71919 -11.62548 -11.19955 -11.09252 -10.99107 -10.94449 -10.72979 -10.61445 -10.53510 -10.48670 -9.97312 -9.57667 -9.39342 -9.15231 -8.82499 -8.76107 -8.65540 -8.42591 -8.37389 -6.02618 -4.05659 1.53155 1.57485 3.00061 3.28463 3.35923 3.36687 3.40171 3.94335 4.03616 4.23579 4.43218 4.63919 4.82500 4.94875 5.00149 5.04350 5.04567 5.10390 5.15218 5.23724 5.28456 5.29348 5.33136 5.48464 5.58884 5.61934 5.66237 5.70670 5.76489 5.78787 5.82334 5.87630 5.90508 5.92256 6.12540 6.14443 6.19042 6.26946 6.32915 6.38508 6.55961 6.63341 6.66548 6.77203 6.90877 6.97289 7.03603 7.17643 7.64313 7.75588 7.89787 7.96689 8.37683 8.62978 9.01608 9.58783 11.08086 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008205 B = 0.003930 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3411.748703 B = 7122.071347 C = 9890.246451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.029 3.971 3 H 0.068 0.932 4 C 0.523 3.477 5 O -0.523 6.523 6 N -0.713 5.713 7 C 0.183 3.817 8 H 0.093 0.907 9 C -0.112 4.112 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.106 4.106 25 N -0.440 5.440 26 C 0.005 3.995 27 C -0.120 4.120 28 C -0.128 4.128 29 C 0.000 4.000 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.994 8.207 -11.794 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 H 0.086 0.914 4 C 0.308 3.692 5 O -0.398 6.398 6 N -0.364 5.364 7 C 0.079 3.921 8 H 0.111 0.889 9 C -0.150 4.150 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.078 4.078 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.125 4.125 25 N -0.163 5.163 26 C -0.124 4.124 27 C -0.139 4.139 28 C -0.185 4.185 29 C -0.129 4.129 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.164 6.676 -11.771 19.589 hybrid contribution -0.908 1.529 0.929 2.006 sum 13.256 8.205 -10.841 18.989 Atomic orbital electron populations 1.21812 0.91490 1.04218 1.02705 1.22248 0.97971 0.96297 0.91800 0.91392 1.20193 0.80202 0.84755 0.84087 1.90670 1.37206 1.25475 1.86465 1.45977 1.53375 1.31986 1.05105 1.20087 0.89075 0.97459 0.85496 0.88920 1.21971 0.97157 1.01065 0.94803 1.19092 0.89003 0.96080 0.97028 1.21261 0.95954 1.34909 1.03917 0.92683 1.25009 0.98275 0.95162 0.95870 1.69977 1.16767 1.37127 1.29216 0.86578 0.80894 0.78032 0.82745 1.19771 1.21055 1.21028 1.20429 0.96170 0.93687 0.97510 1.20894 0.96460 0.95220 1.00100 1.21060 0.93685 0.99245 1.00259 1.21048 0.99083 0.93684 1.01091 1.21080 0.96600 0.95703 1.00511 1.21044 0.92853 0.99663 0.98906 1.68938 1.04040 1.44025 0.99279 1.23872 0.94034 0.99925 0.94530 1.22567 0.96523 0.99220 0.95590 1.21481 1.01086 0.95856 1.00103 1.23906 0.98087 0.98371 0.92500 0.90742 0.90932 0.91816 0.76665 0.91579 0.92646 0.96246 0.96565 0.93059 0.86591 0.86600 0.86647 0.86389 0.86019 0.91842 0.89346 0.90166 0.92499 0.92707 0.91194 0.89507 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.99 37.16 0.33 -1.51 16 2 C 0.03 0.39 2.14 -68.87 -0.15 0.24 16 3 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 4 C 0.52 8.72 7.06 -10.98 -0.08 8.65 16 5 O -0.52 -10.65 15.90 5.56 0.09 -10.57 16 6 N -0.71 -11.32 3.65 -54.93 -0.20 -11.52 16 7 C 0.18 3.20 2.17 -69.08 -0.15 3.05 16 8 H 0.09 1.84 7.45 -51.93 -0.39 1.45 16 9 C -0.11 -2.18 4.67 -26.73 -0.12 -2.30 16 10 C 0.02 0.62 4.86 -27.88 -0.14 0.48 16 11 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.08 -1.21 4.91 -104.63 -0.51 -1.73 16 20 C -0.11 -1.53 9.33 -39.58 -0.37 -1.90 16 21 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.11 -1.60 9.67 -39.58 -0.38 -1.99 16 25 N -0.44 -5.82 5.49 -237.97 -1.31 -7.13 16 26 C 0.01 0.06 6.90 -7.54 -0.05 0.01 16 27 C -0.12 -1.12 4.77 -90.09 -0.43 -1.55 16 28 C -0.13 -1.18 9.71 37.16 0.36 -0.82 16 29 C 0.00 0.00 6.02 -7.54 -0.05 -0.04 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.91 7.57 -51.93 -0.39 0.52 16 32 H 0.06 0.67 7.03 -51.93 -0.37 0.30 16 33 H 0.40 5.63 8.03 -40.82 -0.33 5.30 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.49 7.75 -51.93 -0.40 0.09 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 1.49 7.71 -52.49 -0.40 1.08 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 44 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 45 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 50 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 51 H 0.07 0.58 7.66 -51.92 -0.40 0.18 16 LS Contribution 412.76 15.07 6.22 6.22 Total: -1.00 -32.49 412.76 -11.72 -44.22 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.90 Total: 6.46 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.34 Total: -18.41 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.77 Total: -44.21 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.49 -11.72 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.323 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds