Wall clock time and date at job start Tue Mar 31 2020 16:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 5 5 O 1.21281 * 119.99699 * 119.99828 * 4 2 1 6 6 N 1.34773 * 120.00080 * 300.00319 * 4 2 1 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.46722 * 324.72200 * 7 6 4 9 9 C 1.52999 * 109.47091 * 204.72183 * 7 6 4 10 10 C 1.53005 * 109.47150 * 64.99957 * 9 7 6 11 11 C 1.50698 * 109.46971 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99813 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99998 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47002 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47529 * 119.99330 * 15 13 11 18 18 H 1.48494 * 109.47131 * 239.99550 * 15 13 11 19 19 C 1.50697 * 109.47063 * 84.72117 * 7 6 4 20 20 C 1.38225 * 120.00280 * 39.72688 * 19 7 6 21 21 C 1.38242 * 120.00274 * 179.78833 * 20 19 7 22 22 C 1.38235 * 119.99678 * 0.44149 * 21 20 19 23 23 C 1.38241 * 119.99910 * 359.81374 * 22 21 20 24 24 C 1.38233 * 120.00167 * 359.97438 * 23 22 21 25 25 N 1.46889 * 109.47191 * 239.99233 * 2 1 3 26 26 C 1.47486 * 111.00092 * 155.97284 * 25 2 1 27 27 C 1.53512 * 87.93511 * 221.30098 * 26 25 2 28 28 C 1.53002 * 114.16888 * 272.37942 * 27 26 25 29 29 C 1.47482 * 110.99998 * 60.00404 * 25 2 1 30 30 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 32 32 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 33 33 H 0.97005 * 120.00161 * 359.72088 * 6 4 2 34 34 H 1.08996 * 109.47238 * 184.99506 * 9 7 6 35 35 H 1.09004 * 109.47119 * 305.00046 * 9 7 6 36 36 H 1.09006 * 109.46641 * 299.99859 * 10 9 7 37 37 H 1.09000 * 109.47259 * 59.99588 * 10 9 7 38 38 H 0.97001 * 120.00065 * 180.02562 * 14 13 11 39 39 H 1.08000 * 120.00179 * 359.97438 * 20 19 7 40 40 H 1.07997 * 119.99864 * 180.27965 * 21 20 19 41 41 H 1.07997 * 120.00028 * 179.83877 * 22 21 20 42 42 H 1.07999 * 119.99589 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.00096 * 180.02562 * 24 23 22 44 44 H 1.08999 * 113.47371 * 336.06673 * 26 25 2 45 45 H 1.08997 * 113.47369 * 106.52980 * 26 25 2 46 46 H 1.08996 * 114.17371 * 139.67099 * 27 26 25 47 47 H 1.08998 * 109.46997 * 153.84433 * 28 27 26 48 48 H 1.09002 * 109.46625 * 273.84045 * 28 27 26 49 49 H 1.09001 * 109.47205 * 33.83665 * 28 27 26 50 50 H 1.08994 * 113.47847 * 253.47085 * 29 25 2 51 51 H 1.09010 * 113.47401 * 23.93789 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6509 8 1 2.2278 -2.0133 3.4633 9 6 1.2551 -0.6554 4.8238 10 6 -0.1180 -1.2663 4.5366 11 6 -1.0443 -0.9854 5.6917 12 1 -0.6890 -0.4273 6.5454 13 6 -2.3450 -1.4417 5.6590 14 7 -2.7773 -2.1216 4.6196 15 14 -3.4929 -1.0941 7.0910 16 1 -2.7686 -0.3171 8.1288 17 1 -4.6603 -0.3117 6.6111 18 1 -3.9623 -2.3776 7.6719 19 6 3.5794 -0.4465 3.9854 20 6 3.8855 0.8950 3.8534 21 6 5.1539 1.3484 4.1644 22 6 6.1187 0.4588 4.5987 23 6 5.8141 -0.8837 4.7256 24 6 4.5445 -1.3364 4.4188 25 7 2.0197 -0.6926 -1.1992 26 6 3.3815 -0.2467 -1.5481 27 6 2.9448 -0.2472 -3.0198 28 6 3.1182 -1.5942 -3.7243 29 6 1.5469 -0.0240 -2.4258 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.1523 0.5413 2.5436 34 1 1.6652 -1.0948 5.7331 35 1 1.1533 0.4220 4.9547 36 1 -0.5281 -0.8268 3.6273 37 1 -0.0162 -2.3436 4.4057 38 1 -3.6925 -2.4423 4.5964 39 1 3.1329 1.5894 3.5102 40 1 5.3917 2.3972 4.0656 41 1 7.1104 0.8125 4.8391 42 1 6.5678 -1.5786 5.0652 43 1 4.3064 -2.3850 4.5183 44 1 3.6244 0.7454 -1.1676 45 1 4.1511 -0.9851 -1.3233 46 1 3.3237 0.5954 -3.5981 47 1 2.4057 -1.6689 -4.5458 48 1 4.1328 -1.6718 -4.1150 49 1 2.9397 -2.4014 -3.0139 50 1 0.7617 -0.5735 -2.9449 51 1 1.3002 1.0277 -2.2795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581019933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:51 Heat of formation + Delta-G solvation = -8.469264 kcal Electronic energy + Delta-G solvation = -28827.345214 eV Core-core repulsion = 25112.239282 eV Total energy + Delta-G solvation = -3715.105932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81725 -40.75657 -39.53097 -37.11307 -35.16808 -34.67431 -32.80129 -31.87520 -31.70972 -30.36687 -28.28347 -27.24446 -26.11774 -25.48360 -24.15081 -23.46644 -22.62832 -21.50254 -21.09433 -19.92105 -18.62413 -18.34109 -17.90156 -17.45060 -16.82076 -16.56512 -16.27865 -16.13330 -15.67440 -15.43831 -15.19914 -14.78678 -14.68645 -14.45073 -14.25665 -14.20185 -13.97566 -13.89330 -13.73215 -13.39721 -13.21500 -13.09018 -12.94814 -12.89256 -12.54819 -12.45474 -12.44637 -12.15328 -12.07497 -11.93269 -11.77609 -11.53575 -11.44523 -11.30267 -11.19663 -10.72320 -10.55756 -10.07264 -9.79138 -9.75001 -9.57558 -8.18893 -6.30242 0.45095 0.52397 1.39412 1.40844 1.53231 1.68609 2.14598 2.40800 2.90857 3.06568 3.14447 3.42657 3.66971 3.78767 3.89755 3.95623 4.01583 4.03569 4.14393 4.16212 4.24736 4.29509 4.34464 4.43747 4.58578 4.63136 4.64781 4.65767 4.73377 4.75726 4.77444 4.79468 4.96930 5.03987 5.06342 5.07845 5.14360 5.15820 5.16668 5.18311 5.38554 5.43131 5.50822 5.50970 5.58913 5.61872 5.66992 5.81544 5.84730 6.04356 6.13793 6.23501 6.61964 6.86931 7.32545 7.39188 8.92338 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008205 B = 0.003930 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3411.748703 B = 7122.071347 C = 9890.246451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 H 0.099 0.901 4 C 0.516 3.484 5 O -0.568 6.568 6 N -0.706 5.706 7 C 0.195 3.805 8 H 0.055 0.945 9 C -0.094 4.094 10 C 0.033 3.967 11 C -0.539 4.539 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.283 1.283 19 C -0.097 4.097 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.131 4.131 25 N -0.477 5.477 26 C 0.002 3.998 27 C -0.107 4.107 28 C -0.128 4.128 29 C 0.004 3.996 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.006 0.994 37 H -0.025 1.025 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.086 0.914 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.006 11.568 -11.892 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 H 0.116 0.884 4 C 0.303 3.697 5 O -0.446 6.446 6 N -0.358 5.358 7 C 0.090 3.910 8 H 0.073 0.927 9 C -0.132 4.132 10 C -0.004 4.004 11 C -0.577 4.577 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.786 3.214 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.209 1.209 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.150 4.150 25 N -0.200 5.200 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.185 4.185 29 C -0.125 4.125 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.025 0.975 37 H -0.006 1.006 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.127 0.873 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.104 0.896 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.174 10.065 -11.864 21.733 hybrid contribution -1.163 0.429 0.952 1.563 sum 14.011 10.493 -10.912 20.628 Atomic orbital electron populations 1.21775 0.91249 1.02460 1.04142 1.22224 0.97883 0.97108 0.90186 0.88361 1.20962 0.79338 0.84305 0.85104 1.90643 1.39341 1.27545 1.87101 1.45924 1.53198 1.31970 1.04723 1.19684 0.90344 0.95733 0.85243 0.92666 1.21700 0.94577 1.01346 0.95535 1.18929 0.91725 0.93722 0.95990 1.21682 0.96646 1.34769 1.04626 0.92071 1.25931 1.00164 0.94846 0.98646 1.70118 1.17304 1.38248 1.31410 0.85451 0.78642 0.77924 0.79335 1.18507 1.20219 1.20927 1.20246 0.95010 0.94958 0.99590 1.21081 0.97821 0.94362 1.00200 1.21451 0.92761 1.00948 0.98889 1.21487 1.00509 0.93015 0.99446 1.21374 0.95952 0.96997 0.99897 1.21168 0.94212 0.99363 1.00250 1.68924 1.05343 1.45549 1.00218 1.23904 0.92672 0.99665 0.96426 1.22550 0.95720 0.99931 0.94336 1.21472 1.02172 0.95076 0.99754 1.23993 0.98439 0.99321 0.90703 0.94043 0.90978 0.88839 0.75514 0.92019 0.90967 0.97546 1.00616 0.92930 0.85474 0.83464 0.83325 0.84194 0.87153 0.90414 0.92077 0.87348 0.91182 0.91625 0.94214 0.89582 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.99 71.98 0.65 -2.86 16 2 C 0.04 0.99 2.14 44.17 0.09 1.09 16 3 H 0.10 1.97 7.52 -2.39 -0.02 1.95 16 4 C 0.52 17.98 7.06 87.66 0.62 18.60 16 5 O -0.57 -24.76 15.90 -3.03 -0.05 -24.81 16 6 N -0.71 -23.33 3.65 -446.08 -1.63 -24.96 16 7 C 0.20 7.23 2.17 44.24 0.10 7.32 16 8 H 0.06 2.44 7.45 -2.38 -0.02 2.42 16 9 C -0.09 -3.78 4.67 30.60 0.14 -3.64 16 10 C 0.03 1.73 4.86 29.85 0.15 1.88 16 11 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 15 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 C -0.10 -3.13 4.91 -19.87 -0.10 -3.22 16 20 C -0.12 -3.13 9.33 22.27 0.21 -2.92 16 21 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 22 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 23 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 24 C -0.13 -4.09 9.67 22.27 0.22 -3.88 16 25 N -0.48 -12.57 5.49 -906.80 -4.98 -17.55 16 26 C 0.00 0.05 6.90 83.57 0.58 0.63 16 27 C -0.11 -1.78 4.77 -10.45 -0.05 -1.83 16 28 C -0.13 -2.26 9.71 71.98 0.70 -1.56 16 29 C 0.00 0.07 6.02 83.58 0.50 0.57 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.80 7.57 -2.39 -0.02 1.78 16 32 H 0.09 1.78 7.03 -2.39 -0.02 1.76 16 33 H 0.41 11.65 8.03 -92.70 -0.74 10.90 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.01 0.33 7.75 -2.38 -0.02 0.31 16 37 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.13 3.02 7.71 -2.91 -0.02 3.00 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.11 3.53 8.04 -2.91 -0.02 3.50 16 44 H 0.08 1.50 7.54 -2.39 -0.02 1.48 16 45 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 46 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.04 0.94 7.92 -2.39 -0.02 0.92 16 50 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 51 H 0.09 1.23 7.66 -2.38 -0.02 1.21 16 Total: -1.00 -74.44 412.76 0.97 -73.47 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.15 Total: 31.04 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 5.17 Total: -26.95 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -6.32 Total: -98.67 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -74.44 0.97 -73.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.003 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds