Wall clock time and date at job start Tue Mar 31 2020 16:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47086 * 239.99236 * 2 1 3 5 5 O 1.21280 * 120.00191 * 240.00027 * 4 2 1 6 6 N 1.34782 * 119.99715 * 60.00398 * 4 2 1 7 7 C 1.46498 * 119.99887 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.46982 * 324.99782 * 7 6 4 9 9 C 1.53003 * 109.46998 * 205.00263 * 7 6 4 10 10 C 1.53001 * 109.47178 * 65.00124 * 9 7 6 11 11 C 1.50702 * 109.47010 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99961 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00068 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47058 * 90.00205 * 15 13 11 17 17 H 1.48500 * 109.47607 * 209.99947 * 15 13 11 18 18 H 1.48504 * 109.47340 * 330.00170 * 15 13 11 19 19 C 1.50694 * 109.47266 * 85.00318 * 7 6 4 20 20 C 1.38236 * 120.00200 * 39.72432 * 19 7 6 21 21 C 1.38231 * 119.99920 * 179.79247 * 20 19 7 22 22 C 1.38232 * 120.00081 * 0.43704 * 21 20 19 23 23 C 1.38234 * 119.99984 * 359.81877 * 22 21 20 24 24 C 1.38227 * 120.00060 * 359.97267 * 23 22 21 25 25 N 1.46901 * 109.46705 * 119.99762 * 2 1 3 26 26 C 1.47483 * 110.99926 * 286.62240 * 25 2 1 27 27 C 1.53511 * 87.93202 * 221.29853 * 26 25 2 28 28 C 1.52994 * 114.17337 * 139.67065 * 27 26 25 29 29 C 1.47480 * 111.00014 * 190.65083 * 25 2 1 30 30 H 1.08997 * 109.47450 * 301.83107 * 1 2 3 31 31 H 1.09001 * 109.47009 * 61.82674 * 1 2 3 32 32 H 1.08998 * 109.47653 * 181.82939 * 1 2 3 33 33 H 0.97000 * 119.99629 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46961 * 305.00206 * 9 7 6 35 35 H 1.08997 * 109.46943 * 185.00086 * 9 7 6 36 36 H 1.08998 * 109.47258 * 59.99640 * 10 9 7 37 37 H 1.09008 * 109.46791 * 299.99583 * 10 9 7 38 38 H 0.97000 * 120.00406 * 180.02562 * 14 13 11 39 39 H 1.08000 * 119.99719 * 359.97438 * 20 19 7 40 40 H 1.08002 * 119.99735 * 180.27316 * 21 20 19 41 41 H 1.08000 * 119.99992 * 179.83424 * 22 21 20 42 42 H 1.08004 * 119.99975 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00327 * 180.02562 * 24 23 22 44 44 H 1.09000 * 113.47894 * 336.06194 * 26 25 2 45 45 H 1.09005 * 113.47676 * 106.53322 * 26 25 2 46 46 H 1.09003 * 114.34553 * 272.36324 * 27 26 25 47 47 H 1.09005 * 109.47297 * 326.16075 * 28 27 26 48 48 H 1.09002 * 109.47278 * 86.15781 * 28 27 26 49 49 H 1.09005 * 109.47288 * 206.15969 * 28 27 26 50 50 H 1.08996 * 113.47594 * 253.47118 * 29 25 2 51 51 H 1.08995 * 113.47175 * 23.87708 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 1 3.1949 -1.3323 -3.4611 9 6 2.2469 0.0427 -4.8218 10 6 3.2833 1.1297 -4.5300 11 6 3.3334 2.0985 -5.6833 12 1 2.6906 1.9531 -6.5390 13 6 4.1997 3.1704 -5.6461 14 7 4.2432 4.0161 -6.6523 15 14 5.3109 3.4222 -4.1658 16 1 6.5955 2.7099 -4.3842 17 1 5.5737 4.8726 -3.9850 18 1 4.6470 2.8844 -2.9512 19 6 1.2661 -2.0773 -3.9895 20 6 -0.1006 -1.9146 -3.8609 21 6 -0.9533 -2.9560 -4.1759 22 6 -0.4389 -4.1630 -4.6108 23 6 0.9280 -4.3275 -4.7344 24 6 1.7805 -3.2848 -4.4235 25 7 2.0196 -0.6925 1.1995 26 6 1.8244 0.1354 2.4044 27 6 3.2164 -0.3135 2.8705 28 6 4.0484 0.7957 3.5172 29 6 3.4715 -0.4958 1.3677 30 1 -0.3634 0.5420 0.8731 31 1 -0.3633 0.4852 -0.9059 32 1 -0.3634 -1.0271 0.0328 33 1 1.1494 0.5388 -2.5435 34 1 1.2669 0.5012 -4.9545 35 1 2.5251 -0.4898 -5.7312 36 1 4.2632 0.6713 -4.3972 37 1 3.0050 1.6623 -3.6205 38 1 4.8529 4.7700 -6.6263 39 1 -0.5023 -0.9728 -3.5172 40 1 -2.0213 -2.8273 -4.0796 41 1 -1.1050 -4.9775 -4.8544 42 1 1.3300 -5.2708 -5.0738 43 1 2.8485 -3.4131 -4.5204 44 1 1.7607 1.2027 2.1923 45 1 1.0170 -0.2163 3.0467 46 1 3.2215 -1.2429 3.4400 47 1 3.8216 1.7473 3.0364 48 1 3.8080 0.8585 4.5785 49 1 5.1084 0.5716 3.3973 50 1 4.0600 -1.3822 1.1315 51 1 3.8475 0.4025 0.8781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581019935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:55 Heat of formation + Delta-G solvation = 13.004841 kcal Electronic energy + Delta-G solvation = -28939.858218 eV Core-core repulsion = 25225.683474 eV Total energy + Delta-G solvation = -3714.174745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86648 -39.66911 -38.42700 -35.77769 -33.82720 -33.11100 -31.57724 -30.73769 -30.63401 -29.88496 -26.98102 -26.29484 -25.22018 -23.77311 -22.93296 -22.34162 -20.90602 -20.07779 -19.92984 -19.73043 -17.24583 -16.99253 -16.72324 -16.14886 -15.89749 -15.34998 -15.23918 -14.85473 -14.51197 -14.27470 -14.10688 -13.73548 -13.35388 -13.22243 -13.17786 -12.95357 -12.87738 -12.72651 -12.59834 -12.51303 -12.39002 -12.13725 -11.83938 -11.77351 -11.34572 -11.28945 -11.12082 -11.03244 -10.81042 -10.77258 -10.46511 -10.10912 -9.99853 -9.82904 -9.49700 -9.26833 -8.99979 -8.83349 -8.74688 -8.59287 -8.48151 -6.10249 -4.08748 1.50205 1.55869 2.83747 3.22843 3.25402 3.33207 3.35402 3.87189 3.97717 4.20287 4.39099 4.50594 4.72839 4.84973 4.96134 4.99258 5.01553 5.08283 5.10851 5.18720 5.23748 5.24378 5.24845 5.34864 5.44523 5.48955 5.54849 5.57523 5.59785 5.62039 5.73398 5.77436 5.80718 5.86852 5.92843 6.06760 6.11804 6.14883 6.17994 6.24562 6.41970 6.58992 6.62819 6.64187 6.74121 6.82436 6.91729 7.14218 7.20202 7.32035 7.69210 7.76058 8.45302 8.46944 8.94754 9.52167 11.03095 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.006404 B = 0.005194 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4371.494718 B = 5389.903180 C = 8898.831703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 H 0.073 0.927 4 C 0.521 3.479 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.181 3.819 8 H 0.092 0.908 9 C -0.104 4.104 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.079 4.079 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.106 4.106 25 N -0.447 5.447 26 C 0.001 3.999 27 C -0.121 4.121 28 C -0.142 4.142 29 C 0.010 3.990 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.011 0.989 37 H 0.016 0.984 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 -10.287 16.004 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 H 0.091 0.909 4 C 0.306 3.694 5 O -0.399 6.399 6 N -0.367 5.367 7 C 0.077 3.923 8 H 0.110 0.890 9 C -0.142 4.142 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.080 4.080 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.124 4.124 25 N -0.169 5.169 26 C -0.128 4.128 27 C -0.140 4.140 28 C -0.200 4.200 29 C -0.119 4.119 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.272 -11.500 15.920 21.310 hybrid contribution 0.630 1.542 0.431 1.721 sum -7.643 -9.957 16.351 20.614 Atomic orbital electron populations 1.21703 0.91878 1.03424 1.02485 1.22274 0.97973 0.96902 0.91501 0.90941 1.20240 0.80329 0.84668 0.84202 1.90678 1.37136 1.25619 1.86485 1.46032 1.53808 1.31652 1.05160 1.20121 0.96164 0.90711 0.85329 0.88963 1.21793 1.01279 0.95995 0.95124 1.19567 0.93843 0.93866 0.97493 1.21119 1.22680 1.08346 1.03806 0.90943 1.25007 0.96758 0.95702 0.95817 1.69910 1.38118 1.14948 1.31098 0.86811 0.81527 0.77140 0.83950 1.20264 1.21403 1.19225 1.20325 0.94482 0.95205 0.97980 1.20885 0.92871 0.98771 0.99851 1.21066 0.99353 0.93622 1.00094 1.21062 0.95321 0.97468 1.00851 1.21074 0.93592 0.98727 1.00501 1.21016 0.99915 0.92559 0.98939 1.68934 1.07820 1.40134 1.00055 1.23962 0.98419 0.96948 0.93502 1.22735 0.95380 0.99810 0.96075 1.21714 1.00059 0.97686 1.00558 1.23811 0.91239 1.02085 0.94772 0.91688 0.91496 0.91171 0.76508 0.91929 0.90877 0.97054 0.96591 0.92703 0.86521 0.86499 0.86584 0.86364 0.86094 0.91281 0.89720 0.88070 0.92623 0.92326 0.92085 0.89114 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.18 37.16 0.34 -1.02 16 2 C 0.03 0.32 2.07 -68.87 -0.14 0.18 16 3 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 4 C 0.52 8.12 6.92 -10.98 -0.08 8.04 16 5 O -0.52 -9.97 15.17 5.56 0.08 -9.89 16 6 N -0.71 -10.60 3.64 -54.93 -0.20 -10.80 16 7 C 0.18 2.97 2.17 -69.08 -0.15 2.82 16 8 H 0.09 1.68 7.44 -51.93 -0.39 1.29 16 9 C -0.10 -1.92 4.67 -26.73 -0.12 -2.05 16 10 C -0.01 -0.23 3.93 -27.88 -0.11 -0.34 16 11 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 12 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 15 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 19 C -0.08 -1.20 4.91 -104.63 -0.51 -1.71 16 20 C -0.11 -1.45 9.33 -39.58 -0.37 -1.82 16 21 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 22 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 24 C -0.11 -1.55 9.67 -39.59 -0.38 -1.93 16 25 N -0.45 -5.63 5.81 -237.98 -1.38 -7.02 16 26 C 0.00 0.01 6.57 -7.54 -0.05 -0.04 16 27 C -0.12 -1.14 4.69 -90.09 -0.42 -1.57 16 28 C -0.14 -1.13 9.79 37.15 0.36 -0.77 16 29 C 0.01 0.12 6.09 -7.54 -0.05 0.07 16 30 H 0.06 0.54 7.69 -51.93 -0.40 0.15 16 31 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.40 5.20 8.00 -40.82 -0.33 4.88 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 37 H 0.02 0.35 6.81 -51.92 -0.35 0.00 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.12 1.44 7.71 -52.49 -0.40 1.04 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 44 H 0.07 0.60 7.50 -51.93 -0.39 0.22 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 1.27 8.03 -51.93 -0.42 0.86 16 51 H 0.07 0.85 7.72 -51.93 -0.40 0.44 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -32.84 409.02 -11.44 -44.27 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.90 Total: 5.90 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -3.31 Total: -18.83 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.81 Total: -44.40 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.84 -11.44 -44.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.277 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds