Wall clock time and date at job start Tue Mar 31 2020 16:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47086 * 239.99236 * 2 1 3 5 5 O 1.21280 * 120.00191 * 240.00027 * 4 2 1 6 6 N 1.34782 * 119.99715 * 60.00398 * 4 2 1 7 7 C 1.46498 * 119.99887 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.46982 * 324.99782 * 7 6 4 9 9 C 1.53003 * 109.46998 * 205.00263 * 7 6 4 10 10 C 1.53001 * 109.47178 * 65.00124 * 9 7 6 11 11 C 1.50702 * 109.47010 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99961 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00068 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47058 * 90.00205 * 15 13 11 17 17 H 1.48500 * 109.47607 * 209.99947 * 15 13 11 18 18 H 1.48504 * 109.47340 * 330.00170 * 15 13 11 19 19 C 1.50694 * 109.47266 * 85.00318 * 7 6 4 20 20 C 1.38236 * 120.00200 * 39.72432 * 19 7 6 21 21 C 1.38231 * 119.99920 * 179.79247 * 20 19 7 22 22 C 1.38232 * 120.00081 * 0.43704 * 21 20 19 23 23 C 1.38234 * 119.99984 * 359.81877 * 22 21 20 24 24 C 1.38227 * 120.00060 * 359.97267 * 23 22 21 25 25 N 1.46901 * 109.46705 * 119.99762 * 2 1 3 26 26 C 1.47483 * 110.99926 * 286.62240 * 25 2 1 27 27 C 1.53511 * 87.93202 * 221.29853 * 26 25 2 28 28 C 1.52994 * 114.17337 * 139.67065 * 27 26 25 29 29 C 1.47480 * 111.00014 * 190.65083 * 25 2 1 30 30 H 1.08997 * 109.47450 * 301.83107 * 1 2 3 31 31 H 1.09001 * 109.47009 * 61.82674 * 1 2 3 32 32 H 1.08998 * 109.47653 * 181.82939 * 1 2 3 33 33 H 0.97000 * 119.99629 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46961 * 305.00206 * 9 7 6 35 35 H 1.08997 * 109.46943 * 185.00086 * 9 7 6 36 36 H 1.08998 * 109.47258 * 59.99640 * 10 9 7 37 37 H 1.09008 * 109.46791 * 299.99583 * 10 9 7 38 38 H 0.97000 * 120.00406 * 180.02562 * 14 13 11 39 39 H 1.08000 * 119.99719 * 359.97438 * 20 19 7 40 40 H 1.08002 * 119.99735 * 180.27316 * 21 20 19 41 41 H 1.08000 * 119.99992 * 179.83424 * 22 21 20 42 42 H 1.08004 * 119.99975 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00327 * 180.02562 * 24 23 22 44 44 H 1.09000 * 113.47894 * 336.06194 * 26 25 2 45 45 H 1.09005 * 113.47676 * 106.53322 * 26 25 2 46 46 H 1.09003 * 114.34553 * 272.36324 * 27 26 25 47 47 H 1.09005 * 109.47297 * 326.16075 * 28 27 26 48 48 H 1.09002 * 109.47278 * 86.15781 * 28 27 26 49 49 H 1.09005 * 109.47288 * 206.15969 * 28 27 26 50 50 H 1.08996 * 113.47594 * 253.47118 * 29 25 2 51 51 H 1.08995 * 113.47175 * 23.87708 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 1 3.1949 -1.3323 -3.4611 9 6 2.2469 0.0427 -4.8218 10 6 3.2833 1.1297 -4.5300 11 6 3.3334 2.0985 -5.6833 12 1 2.6906 1.9531 -6.5390 13 6 4.1997 3.1704 -5.6461 14 7 4.2432 4.0161 -6.6523 15 14 5.3109 3.4222 -4.1658 16 1 6.5955 2.7099 -4.3842 17 1 5.5737 4.8726 -3.9850 18 1 4.6470 2.8844 -2.9512 19 6 1.2661 -2.0773 -3.9895 20 6 -0.1006 -1.9146 -3.8609 21 6 -0.9533 -2.9560 -4.1759 22 6 -0.4389 -4.1630 -4.6108 23 6 0.9280 -4.3275 -4.7344 24 6 1.7805 -3.2848 -4.4235 25 7 2.0196 -0.6925 1.1995 26 6 1.8244 0.1354 2.4044 27 6 3.2164 -0.3135 2.8705 28 6 4.0484 0.7957 3.5172 29 6 3.4715 -0.4958 1.3677 30 1 -0.3634 0.5420 0.8731 31 1 -0.3633 0.4852 -0.9059 32 1 -0.3634 -1.0271 0.0328 33 1 1.1494 0.5388 -2.5435 34 1 1.2669 0.5012 -4.9545 35 1 2.5251 -0.4898 -5.7312 36 1 4.2632 0.6713 -4.3972 37 1 3.0050 1.6623 -3.6205 38 1 4.8529 4.7700 -6.6263 39 1 -0.5023 -0.9728 -3.5172 40 1 -2.0213 -2.8273 -4.0796 41 1 -1.1050 -4.9775 -4.8544 42 1 1.3300 -5.2708 -5.0738 43 1 2.8485 -3.4131 -4.5204 44 1 1.7607 1.2027 2.1923 45 1 1.0170 -0.2163 3.0467 46 1 3.2215 -1.2429 3.4400 47 1 3.8216 1.7473 3.0364 48 1 3.8080 0.8585 4.5785 49 1 5.1084 0.5716 3.3973 50 1 4.0600 -1.3822 1.1315 51 1 3.8475 0.4025 0.8781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581019935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:54 Heat of formation + Delta-G solvation = -7.388506 kcal Electronic energy + Delta-G solvation = -28940.742540 eV Core-core repulsion = 25225.683474 eV Total energy + Delta-G solvation = -3715.059067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86187 -40.73970 -39.51680 -37.17229 -35.16652 -34.68441 -33.02407 -32.06599 -31.71765 -30.68651 -28.54381 -27.18006 -26.04976 -25.30234 -23.96677 -23.38165 -22.42427 -21.45913 -21.02077 -20.59207 -18.99799 -18.30311 -17.89114 -17.28779 -16.83997 -16.55318 -16.23239 -16.19408 -15.82066 -15.49632 -15.30594 -14.95322 -14.87757 -14.58056 -14.23200 -14.18058 -13.90477 -13.79344 -13.74193 -13.46418 -13.31374 -13.24419 -13.03123 -12.98173 -12.67594 -12.57190 -12.34185 -12.12892 -11.95055 -11.80566 -11.75232 -11.63455 -11.56914 -11.37093 -11.27063 -10.79809 -10.69036 -10.14595 -9.86396 -9.78063 -9.57820 -8.31421 -6.34858 0.45471 0.53601 1.31412 1.32925 1.43544 1.64480 2.09520 2.31935 2.90840 3.01388 3.04213 3.40094 3.62627 3.76847 3.81355 3.95281 4.01007 4.04845 4.13083 4.21096 4.28555 4.29695 4.30228 4.40928 4.50449 4.58810 4.61098 4.63882 4.72700 4.75203 4.79580 4.82900 4.85867 4.87379 4.97576 4.99016 5.12145 5.13076 5.17207 5.23780 5.32300 5.34922 5.40707 5.40833 5.51711 5.59004 5.62403 5.63006 5.78188 5.98515 6.14485 6.26262 6.57042 6.73303 7.26809 7.29730 8.85224 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.006404 B = 0.005194 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4371.494718 B = 5389.903180 C = 8898.831703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.083 0.917 4 C 0.517 3.483 5 O -0.565 6.565 6 N -0.709 5.709 7 C 0.195 3.805 8 H 0.068 0.932 9 C -0.090 4.090 10 C -0.004 4.004 11 C -0.528 4.528 12 H 0.037 0.963 13 C 0.010 3.990 14 N -0.948 5.948 15 Si 0.943 3.057 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.248 1.248 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.130 4.130 25 N -0.469 5.469 26 C 0.008 3.992 27 C -0.109 4.109 28 C -0.139 4.139 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.410 0.590 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.004 0.996 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -10.502 18.424 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.303 3.697 5 O -0.443 6.443 6 N -0.361 5.361 7 C 0.090 3.910 8 H 0.086 0.914 9 C -0.128 4.128 10 C -0.041 4.041 11 C -0.566 4.566 12 H 0.055 0.945 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.767 3.233 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.172 1.172 19 C -0.100 4.100 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.148 4.148 25 N -0.192 5.192 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.196 4.196 29 C -0.127 4.127 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.133 0.867 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.004 -11.708 18.348 23.954 hybrid contribution 1.113 1.532 -0.428 1.942 sum -8.891 -10.176 17.920 22.444 Atomic orbital electron populations 1.21703 0.89758 1.03166 1.04219 1.22322 0.99526 0.96606 0.89847 0.89926 1.20896 0.79474 0.84250 0.85062 1.90658 1.38968 1.27583 1.87052 1.45972 1.53613 1.31803 1.04695 1.19728 0.95765 0.90644 0.84904 0.91381 1.21573 1.00216 0.95245 0.95812 1.19469 0.94838 0.93972 0.95864 1.21446 1.21685 1.09299 1.04170 0.94502 1.25892 0.98463 0.95454 0.98856 1.70053 1.39475 1.15889 1.33481 0.85768 0.79363 0.77386 0.80746 1.20045 1.20677 1.17204 1.20243 0.95065 0.94982 0.99717 1.21093 0.92332 0.99931 0.99977 1.21444 1.00677 0.93184 0.99004 1.21480 0.95349 0.98273 0.99486 1.21377 0.94069 0.99003 0.99991 1.21182 1.00221 0.93376 1.00037 1.68928 1.07676 1.41521 1.01095 1.24009 0.98741 0.97288 0.92021 1.22692 0.95581 1.00488 0.94019 1.21695 0.99586 0.96951 1.01406 1.23791 0.91177 1.00467 0.97234 0.89519 0.90186 0.92399 0.75308 0.91169 0.91927 0.97716 0.95546 0.92501 0.85382 0.83705 0.83566 0.84258 0.86693 0.90003 0.88314 0.87919 0.92521 0.90658 0.92347 0.91917 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.18 71.98 0.66 -1.61 16 2 C 0.03 0.68 2.07 44.17 0.09 0.77 16 3 H 0.08 1.76 7.56 -2.39 -0.02 1.74 16 4 C 0.52 15.95 6.92 87.65 0.61 16.56 16 5 O -0.56 -22.04 15.17 -3.03 -0.05 -22.08 16 6 N -0.71 -20.62 3.64 -446.10 -1.62 -22.25 16 7 C 0.19 6.47 2.17 44.24 0.10 6.56 16 8 H 0.07 2.59 7.44 -2.38 -0.02 2.57 16 9 C -0.09 -3.40 4.67 30.60 0.14 -3.25 16 10 C 0.00 -0.18 3.93 29.85 0.12 -0.07 16 11 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 12 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 13 C 0.01 0.61 5.47 84.65 0.46 1.07 16 14 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 15 Si 0.94 44.15 27.47 68.60 1.88 46.03 16 16 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 19 C -0.10 -3.02 4.91 -19.87 -0.10 -3.11 16 20 C -0.12 -3.01 9.33 22.27 0.21 -2.81 16 21 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 23 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 24 C -0.13 -3.84 9.67 22.27 0.22 -3.63 16 25 N -0.47 -11.30 5.81 -906.82 -5.27 -16.57 16 26 C 0.01 0.13 6.57 83.58 0.55 0.68 16 27 C -0.11 -1.88 4.69 -10.45 -0.05 -1.93 16 28 C -0.14 -1.90 9.79 71.98 0.70 -1.20 16 29 C 0.00 0.06 6.09 83.58 0.51 0.57 16 30 H 0.09 1.14 7.69 -2.39 -0.02 1.13 16 31 H 0.08 1.17 7.51 -2.39 -0.02 1.15 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 10.09 8.00 -92.71 -0.74 9.35 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 37 H 0.03 1.15 6.81 -2.38 -0.02 1.13 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.13 2.94 7.71 -2.91 -0.02 2.91 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.11 3.39 8.04 -2.91 -0.02 3.36 16 44 H 0.08 1.16 7.50 -2.39 -0.02 1.14 16 45 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 0.77 7.90 -2.38 -0.02 0.75 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 51 H 0.06 1.51 7.72 -2.39 -0.02 1.49 16 Total: -1.00 -73.27 409.02 0.47 -72.80 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.10 Total: 29.43 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 5.14 Total: -28.88 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -6.60 Total: -97.30 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -73.27 0.47 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.407 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds