Wall clock time and date at job start Tue Mar 31 2020 16:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47117 * 2 1 4 4 C 1.50706 * 109.47019 * 240.00246 * 2 1 3 5 5 O 1.21277 * 119.99680 * 239.99821 * 4 2 1 6 6 N 1.34777 * 119.99796 * 60.00180 * 4 2 1 7 7 C 1.46497 * 119.99577 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47581 * 34.99757 * 7 6 4 9 9 C 1.53004 * 109.47116 * 154.99780 * 7 6 4 10 10 C 1.52998 * 109.46939 * 294.99729 * 9 7 6 11 11 C 1.50701 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99342 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99746 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00010 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47012 * 89.99938 * 15 13 11 17 17 H 1.48497 * 109.47006 * 209.99667 * 15 13 11 18 18 H 1.48496 * 109.46907 * 329.99890 * 15 13 11 19 19 C 1.50702 * 109.47328 * 274.99639 * 7 6 4 20 20 C 1.38233 * 119.99797 * 319.72938 * 19 7 6 21 21 C 1.38238 * 119.99951 * 179.78529 * 20 19 7 22 22 C 1.38230 * 119.99944 * 0.44302 * 21 20 19 23 23 C 1.38236 * 119.99964 * 359.81135 * 22 21 20 24 24 C 1.38233 * 120.00227 * 359.97438 * 23 22 21 25 25 N 1.46898 * 109.47455 * 120.00251 * 2 1 3 26 26 C 1.47479 * 111.00191 * 189.67034 * 25 2 1 27 27 C 1.53510 * 87.99979 * 138.67003 * 26 25 2 28 28 C 1.53007 * 114.17025 * 87.64977 * 27 26 25 29 29 C 1.47479 * 110.99638 * 285.63976 * 25 2 1 30 30 H 1.09005 * 109.47493 * 63.35042 * 1 2 3 31 31 H 1.09002 * 109.47452 * 183.34813 * 1 2 3 32 32 H 1.09002 * 109.47099 * 303.34907 * 1 2 3 33 33 H 0.96998 * 119.99930 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.46854 * 54.99847 * 9 7 6 35 35 H 1.08998 * 109.47260 * 174.99948 * 9 7 6 36 36 H 1.09004 * 109.47454 * 300.00122 * 10 9 7 37 37 H 1.08998 * 109.46966 * 60.00039 * 10 9 7 38 38 H 0.96998 * 119.99451 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00269 * 359.97438 * 20 19 7 40 40 H 1.08001 * 120.00113 * 180.27470 * 21 20 19 41 41 H 1.07997 * 119.99987 * 179.82924 * 22 21 20 42 42 H 1.08008 * 119.99858 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.00582 * 180.02562 * 24 23 22 44 44 H 1.09000 * 113.47468 * 253.46687 * 26 25 2 45 45 H 1.09000 * 113.47664 * 23.87538 * 26 25 2 46 46 H 1.08993 * 114.17573 * 220.35704 * 27 26 25 47 47 H 1.08996 * 109.46759 * 59.99754 * 28 27 26 48 48 H 1.08996 * 109.47396 * 180.02562 * 28 27 26 49 49 H 1.09007 * 109.46630 * 300.00350 * 28 27 26 50 50 H 1.08998 * 113.47882 * 336.06048 * 29 25 2 51 51 H 1.09001 * 113.47732 * 106.47186 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 1 2.2308 -2.0136 -3.4614 9 6 1.2504 -0.6613 -4.8219 10 6 -0.1200 -1.2760 -4.5301 11 6 -1.0501 -1.0002 -5.6832 12 1 -0.6988 -0.4427 -6.5389 13 6 -2.3495 -1.4597 -5.6459 14 7 -3.1611 -1.2194 -6.6526 15 14 -2.9573 -2.4234 -4.1656 16 1 -3.5227 -1.4856 -3.1626 17 1 -4.0080 -3.3807 -4.5956 18 1 -1.8245 -3.1699 -3.5620 19 6 3.5762 -0.4435 -3.9897 20 6 3.8751 0.9010 -3.8719 21 6 5.1437 1.3565 -4.1786 22 6 6.1107 0.4689 -4.6119 23 6 5.8103 -0.8749 -4.7348 24 6 4.5430 -1.3310 -4.4239 25 7 2.0197 -0.6925 1.1994 26 6 3.4755 -0.5152 1.3547 27 6 3.2370 -0.3200 2.8585 28 6 3.2291 -1.6199 3.6655 29 6 1.8459 0.1447 2.4010 30 1 -0.3634 0.4609 -0.9185 31 1 -0.3634 -1.0259 0.0600 32 1 -0.3633 0.5650 0.8585 33 1 1.1487 0.5386 -2.5435 34 1 1.1449 0.4154 -4.9545 35 1 1.6596 -1.1010 -5.7314 36 1 -0.0144 -2.3527 -4.3974 37 1 -0.5292 -0.8362 -3.6205 38 1 -4.0753 -1.5423 -6.6262 39 1 3.1183 1.5952 -3.5372 40 1 5.3785 2.4062 -4.0822 41 1 7.1011 0.8251 -4.8541 42 1 6.5660 -1.5684 -5.0729 43 1 4.3083 -2.3808 -4.5195 44 1 4.0497 -1.4111 1.1188 45 1 3.8600 0.3751 0.8570 46 1 3.8446 0.4649 3.3087 47 1 4.1909 -2.1210 3.5564 48 1 3.0542 -1.3937 4.7173 49 1 2.4363 -2.2712 3.2975 50 1 1.7954 1.2115 2.1833 51 1 1.0383 -0.1914 3.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581019938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:00 Heat of formation + Delta-G solvation = 13.776761 kcal Electronic energy + Delta-G solvation = -28997.105539 eV Core-core repulsion = 25282.964267 eV Total energy + Delta-G solvation = -3714.141272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90033 -39.69599 -38.45711 -35.78100 -33.79777 -33.09376 -31.53711 -30.76663 -30.64344 -29.57973 -26.97861 -26.28970 -25.32284 -23.84402 -23.11347 -22.44107 -20.96775 -20.13269 -19.95155 -19.18628 -17.38500 -17.03288 -16.72982 -16.39615 -15.73766 -15.39812 -15.22430 -14.63112 -14.45860 -14.22694 -14.12512 -13.57242 -13.48231 -13.36042 -13.26276 -13.11399 -12.87966 -12.67825 -12.53635 -12.30646 -12.25670 -12.02714 -11.86965 -11.75094 -11.31946 -11.25374 -11.10734 -11.03610 -10.81024 -10.72608 -10.56921 -10.16032 -9.92696 -9.79734 -9.49371 -9.24678 -8.96508 -8.85865 -8.78094 -8.56670 -8.51277 -6.07985 -4.06555 1.46517 1.51789 2.82741 3.23149 3.27724 3.36940 3.42467 3.85680 3.94400 4.17786 4.42397 4.56679 4.72998 4.84961 4.91109 4.97145 4.98227 5.01437 5.07894 5.18573 5.21796 5.23135 5.26222 5.40791 5.48879 5.52890 5.59005 5.61420 5.67299 5.71147 5.73263 5.77049 5.82578 5.86362 6.03971 6.07061 6.12006 6.18312 6.20842 6.24666 6.42020 6.56278 6.59452 6.62811 6.75374 6.81372 6.90685 7.10842 7.22371 7.34973 7.70338 7.77106 8.45069 8.48946 8.96774 9.54598 11.05278 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.004540 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.167133 B = 6166.046272 C = 9070.836348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 H 0.070 0.930 4 C 0.520 3.480 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.181 3.819 8 H 0.093 0.907 9 C -0.104 4.104 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.078 4.078 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.106 4.106 25 N -0.443 5.443 26 C 0.011 3.989 27 C -0.122 4.122 28 C -0.127 4.127 29 C 0.000 4.000 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.678 6.168 16.013 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 H 0.087 0.913 4 C 0.305 3.695 5 O -0.399 6.399 6 N -0.367 5.367 7 C 0.076 3.924 8 H 0.111 0.889 9 C -0.142 4.142 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.080 4.080 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.124 4.124 25 N -0.166 5.166 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.184 4.184 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.665 4.736 15.939 22.844 hybrid contribution -0.485 0.869 0.399 1.072 sum 15.180 5.605 16.338 22.995 Atomic orbital electron populations 1.21750 0.91600 1.03906 1.02717 1.22270 0.98176 0.96494 0.91452 0.91259 1.20262 0.80245 0.84774 0.84225 1.90678 1.37228 1.25497 1.86481 1.46030 1.53270 1.32194 1.05166 1.20131 0.89444 0.97427 0.85368 0.88861 1.21793 0.95775 1.01514 0.95089 1.19564 0.92003 0.95970 0.97215 1.21113 0.95276 1.35697 1.03863 0.91006 1.25011 0.96800 0.95607 0.95892 1.69915 1.06441 1.46638 1.31141 0.86825 0.78851 0.80539 0.83395 1.20289 1.21384 1.18916 1.20352 0.95978 0.93732 0.97911 1.20897 0.96501 0.95116 1.00076 1.21068 0.93622 0.99320 1.00177 1.21063 0.99140 0.93674 1.00850 1.21085 0.96617 0.95705 1.00444 1.21033 0.92885 0.99649 0.98841 1.68962 1.07845 1.39736 1.00065 1.23775 0.91316 1.01947 0.94700 1.22612 0.96824 0.98880 0.95739 1.21468 1.02582 0.95816 0.98550 1.23947 0.98519 0.96615 0.93839 0.91103 0.90952 0.91710 0.76513 0.92005 0.90893 0.96562 0.96924 0.92721 0.86546 0.86524 0.86574 0.86331 0.86024 0.89069 0.91971 0.90132 0.92379 0.92740 0.91403 0.91491 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.15 0.34 -1.32 16 2 C 0.03 0.35 2.08 -68.87 -0.14 0.21 16 3 H 0.07 0.72 7.56 -51.92 -0.39 0.32 16 4 C 0.52 8.03 6.91 -10.98 -0.08 7.95 16 5 O -0.52 -9.88 15.10 5.56 0.08 -9.80 16 6 N -0.71 -10.51 3.65 -54.93 -0.20 -10.71 16 7 C 0.18 2.95 2.17 -69.08 -0.15 2.80 16 8 H 0.09 1.71 7.44 -51.92 -0.39 1.32 16 9 C -0.10 -1.92 4.67 -26.73 -0.12 -2.05 16 10 C -0.01 -0.23 3.93 -27.88 -0.11 -0.34 16 11 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 12 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 15 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 19 C -0.08 -1.18 4.91 -104.62 -0.51 -1.69 16 20 C -0.11 -1.45 9.32 -39.58 -0.37 -1.82 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.52 10.05 -39.59 -0.40 -1.91 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.11 -1.52 9.67 -39.58 -0.38 -1.90 16 25 N -0.44 -5.49 5.63 -237.80 -1.34 -6.83 16 26 C 0.01 0.13 6.03 -7.55 -0.05 0.09 16 27 C -0.12 -1.08 4.78 -90.02 -0.43 -1.51 16 28 C -0.13 -1.10 9.72 37.16 0.36 -0.74 16 29 C 0.00 0.00 6.60 -7.49 -0.05 -0.05 16 30 H 0.07 0.81 7.47 -51.93 -0.39 0.42 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.63 7.77 -51.93 -0.40 0.22 16 33 H 0.40 5.14 7.98 -40.82 -0.33 4.82 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.28 7.18 -51.93 -0.37 -0.10 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.12 1.42 7.73 -52.48 -0.41 1.01 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 44 H 0.09 1.23 7.97 -51.93 -0.41 0.81 16 45 H 0.06 0.68 7.77 -51.93 -0.40 0.28 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 50 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 51 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -32.89 408.97 -11.41 -44.31 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.91 Total: 5.63 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.31 Total: -18.99 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.77 Total: -44.28 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.89 -11.41 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.082 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds