Wall clock time and date at job start Tue Mar 31 2020 16:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47117 * 2 1 4 4 C 1.50706 * 109.47019 * 240.00246 * 2 1 3 5 5 O 1.21277 * 119.99680 * 239.99821 * 4 2 1 6 6 N 1.34777 * 119.99796 * 60.00180 * 4 2 1 7 7 C 1.46497 * 119.99577 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47581 * 34.99757 * 7 6 4 9 9 C 1.53004 * 109.47116 * 154.99780 * 7 6 4 10 10 C 1.52998 * 109.46939 * 294.99729 * 9 7 6 11 11 C 1.50701 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99342 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99746 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00010 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47012 * 89.99938 * 15 13 11 17 17 H 1.48497 * 109.47006 * 209.99667 * 15 13 11 18 18 H 1.48496 * 109.46907 * 329.99890 * 15 13 11 19 19 C 1.50702 * 109.47328 * 274.99639 * 7 6 4 20 20 C 1.38233 * 119.99797 * 319.72938 * 19 7 6 21 21 C 1.38238 * 119.99951 * 179.78529 * 20 19 7 22 22 C 1.38230 * 119.99944 * 0.44302 * 21 20 19 23 23 C 1.38236 * 119.99964 * 359.81135 * 22 21 20 24 24 C 1.38233 * 120.00227 * 359.97438 * 23 22 21 25 25 N 1.46898 * 109.47455 * 120.00251 * 2 1 3 26 26 C 1.47479 * 111.00191 * 189.67034 * 25 2 1 27 27 C 1.53510 * 87.99979 * 138.67003 * 26 25 2 28 28 C 1.53007 * 114.17025 * 87.64977 * 27 26 25 29 29 C 1.47479 * 110.99638 * 285.63976 * 25 2 1 30 30 H 1.09005 * 109.47493 * 63.35042 * 1 2 3 31 31 H 1.09002 * 109.47452 * 183.34813 * 1 2 3 32 32 H 1.09002 * 109.47099 * 303.34907 * 1 2 3 33 33 H 0.96998 * 119.99930 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.46854 * 54.99847 * 9 7 6 35 35 H 1.08998 * 109.47260 * 174.99948 * 9 7 6 36 36 H 1.09004 * 109.47454 * 300.00122 * 10 9 7 37 37 H 1.08998 * 109.46966 * 60.00039 * 10 9 7 38 38 H 0.96998 * 119.99451 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00269 * 359.97438 * 20 19 7 40 40 H 1.08001 * 120.00113 * 180.27470 * 21 20 19 41 41 H 1.07997 * 119.99987 * 179.82924 * 22 21 20 42 42 H 1.08008 * 119.99858 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.00582 * 180.02562 * 24 23 22 44 44 H 1.09000 * 113.47468 * 253.46687 * 26 25 2 45 45 H 1.09000 * 113.47664 * 23.87538 * 26 25 2 46 46 H 1.08993 * 114.17573 * 220.35704 * 27 26 25 47 47 H 1.08996 * 109.46759 * 59.99754 * 28 27 26 48 48 H 1.08996 * 109.47396 * 180.02562 * 28 27 26 49 49 H 1.09007 * 109.46630 * 300.00350 * 28 27 26 50 50 H 1.08998 * 113.47882 * 336.06048 * 29 25 2 51 51 H 1.09001 * 113.47732 * 106.47186 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 1 2.2308 -2.0136 -3.4614 9 6 1.2504 -0.6613 -4.8219 10 6 -0.1200 -1.2760 -4.5301 11 6 -1.0501 -1.0002 -5.6832 12 1 -0.6988 -0.4427 -6.5389 13 6 -2.3495 -1.4597 -5.6459 14 7 -3.1611 -1.2194 -6.6526 15 14 -2.9573 -2.4234 -4.1656 16 1 -3.5227 -1.4856 -3.1626 17 1 -4.0080 -3.3807 -4.5956 18 1 -1.8245 -3.1699 -3.5620 19 6 3.5762 -0.4435 -3.9897 20 6 3.8751 0.9010 -3.8719 21 6 5.1437 1.3565 -4.1786 22 6 6.1107 0.4689 -4.6119 23 6 5.8103 -0.8749 -4.7348 24 6 4.5430 -1.3310 -4.4239 25 7 2.0197 -0.6925 1.1994 26 6 3.4755 -0.5152 1.3547 27 6 3.2370 -0.3200 2.8585 28 6 3.2291 -1.6199 3.6655 29 6 1.8459 0.1447 2.4010 30 1 -0.3634 0.4609 -0.9185 31 1 -0.3634 -1.0259 0.0600 32 1 -0.3633 0.5650 0.8585 33 1 1.1487 0.5386 -2.5435 34 1 1.1449 0.4154 -4.9545 35 1 1.6596 -1.1010 -5.7314 36 1 -0.0144 -2.3527 -4.3974 37 1 -0.5292 -0.8362 -3.6205 38 1 -4.0753 -1.5423 -6.6262 39 1 3.1183 1.5952 -3.5372 40 1 5.3785 2.4062 -4.0822 41 1 7.1011 0.8251 -4.8541 42 1 6.5660 -1.5684 -5.0729 43 1 4.3083 -2.3808 -4.5195 44 1 4.0497 -1.4111 1.1188 45 1 3.8600 0.3751 0.8570 46 1 3.8446 0.4649 3.3087 47 1 4.1909 -2.1210 3.5564 48 1 3.0542 -1.3937 4.7173 49 1 2.4363 -2.2712 3.2975 50 1 1.7954 1.2115 2.1833 51 1 1.0383 -0.1914 3.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581019938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:59 Heat of formation + Delta-G solvation = -6.636185 kcal Electronic energy + Delta-G solvation = -28997.990710 eV Core-core repulsion = 25282.964267 eV Total energy + Delta-G solvation = -3715.026444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86396 -40.74523 -39.52620 -37.16904 -35.15480 -34.68451 -33.00031 -32.05869 -31.72771 -30.41326 -28.54843 -27.13686 -26.15543 -25.34422 -24.17307 -23.46377 -22.43264 -21.53686 -21.11541 -19.93352 -19.03301 -18.35220 -17.94830 -17.47888 -16.83779 -16.48548 -16.31508 -16.06312 -15.64865 -15.48508 -15.27843 -14.97335 -14.67049 -14.53589 -14.26825 -14.22656 -14.07648 -13.96690 -13.80777 -13.48977 -13.26039 -13.13623 -12.96381 -12.89200 -12.61520 -12.52916 -12.34488 -12.10915 -11.96179 -11.90378 -11.68987 -11.63459 -11.51210 -11.35637 -11.33549 -10.78651 -10.67771 -10.12409 -9.79918 -9.79244 -9.59031 -8.31023 -6.34174 0.44103 0.51939 1.30965 1.35429 1.46342 1.64557 2.11122 2.32965 2.89812 3.03369 3.04775 3.41802 3.65989 3.75504 3.88119 3.94878 4.02933 4.03541 4.12028 4.16459 4.21740 4.28787 4.29959 4.43587 4.57724 4.58242 4.62939 4.65278 4.71810 4.74823 4.76786 4.82128 4.87617 4.99528 5.03631 5.05288 5.11182 5.14913 5.16105 5.17386 5.34984 5.36078 5.41924 5.49714 5.52035 5.57901 5.61758 5.63243 5.77608 6.02398 6.13071 6.26745 6.58127 6.73981 7.27885 7.30553 8.85583 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.004540 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.167133 B = 6166.046272 C = 9070.836348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 H 0.097 0.903 4 C 0.516 3.484 5 O -0.565 6.565 6 N -0.709 5.709 7 C 0.195 3.805 8 H 0.066 0.934 9 C -0.090 4.090 10 C -0.004 4.004 11 C -0.527 4.527 12 H 0.037 0.963 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.942 3.058 16 H -0.258 1.258 17 H -0.286 1.286 18 H -0.260 1.260 19 C -0.098 4.098 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.129 4.129 25 N -0.473 5.473 26 C 0.008 3.992 27 C -0.110 4.110 28 C -0.126 4.126 29 C 0.005 3.995 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.410 0.590 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.004 0.996 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.834 8.141 18.427 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.442 6.442 6 N -0.361 5.361 7 C 0.089 3.911 8 H 0.084 0.916 9 C -0.128 4.128 10 C -0.041 4.041 11 C -0.565 4.565 12 H 0.055 0.945 13 C -0.186 4.186 14 N -0.589 5.589 15 Si 0.766 3.234 16 H -0.183 1.183 17 H -0.212 1.212 18 H -0.185 1.185 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.148 4.148 25 N -0.196 5.196 26 C -0.121 4.121 27 C -0.129 4.129 28 C -0.183 4.183 29 C -0.123 4.123 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.819 6.738 18.360 25.795 hybrid contribution -0.761 0.266 -0.447 0.922 sum 16.058 7.004 17.913 25.056 Atomic orbital electron populations 1.21750 0.91065 1.02805 1.04050 1.22277 0.98397 0.97184 0.89838 0.88566 1.20933 0.79420 0.84326 0.85084 1.90660 1.39109 1.27417 1.87045 1.45970 1.53186 1.32247 1.04700 1.19717 0.90144 0.96244 0.84954 0.91559 1.21572 0.94000 1.01464 0.95805 1.19461 0.93348 0.95553 0.95747 1.21438 0.96172 1.34665 1.04214 0.94458 1.25879 0.97110 0.96774 0.98850 1.70054 1.07028 1.48353 1.33453 0.85786 0.78302 0.79334 0.79995 1.18287 1.21185 1.18477 1.20240 0.95161 0.94828 0.99721 1.21093 0.97727 0.94458 1.00198 1.21443 0.92880 1.00901 0.99020 1.21480 1.00477 0.93133 0.99419 1.21380 0.96159 0.96878 0.99907 1.21182 0.94092 0.99533 0.99990 1.68956 1.08331 1.41338 1.01023 1.23755 0.90693 1.00736 0.96901 1.22605 0.96955 0.99379 0.93945 1.21459 1.01692 0.95547 0.99629 1.24008 0.98723 0.97308 0.92247 0.90815 0.93381 0.89162 0.75294 0.91126 0.91989 0.97752 0.95616 0.92506 0.85442 0.83680 0.83519 0.84245 0.86782 0.92127 0.91429 0.87795 0.92599 0.90792 0.93509 0.89435 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.19 71.98 0.66 -2.30 16 2 C 0.04 0.80 2.08 44.17 0.09 0.89 16 3 H 0.10 1.68 7.56 -2.38 -0.02 1.66 16 4 C 0.52 15.77 6.91 87.66 0.61 16.38 16 5 O -0.56 -21.90 15.10 -3.02 -0.05 -21.94 16 6 N -0.71 -20.51 3.65 -446.08 -1.63 -22.14 16 7 C 0.19 6.48 2.17 44.25 0.10 6.57 16 8 H 0.07 2.56 7.44 -2.38 -0.02 2.54 16 9 C -0.09 -3.41 4.67 30.60 0.14 -3.27 16 10 C 0.00 -0.17 3.93 29.85 0.12 -0.05 16 11 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 12 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 13 C 0.01 0.64 5.47 84.65 0.46 1.10 16 14 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 15 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 19 C -0.10 -2.96 4.91 -19.87 -0.10 -3.05 16 20 C -0.12 -2.97 9.32 22.27 0.21 -2.77 16 21 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 23 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 24 C -0.13 -3.78 9.67 22.27 0.22 -3.56 16 25 N -0.47 -11.13 5.63 -906.27 -5.11 -16.23 16 26 C 0.01 0.18 6.03 83.57 0.50 0.68 16 27 C -0.11 -1.71 4.78 -10.41 -0.05 -1.76 16 28 C -0.13 -2.03 9.72 71.98 0.70 -1.33 16 29 C 0.01 0.09 6.60 83.61 0.55 0.64 16 30 H 0.07 1.51 7.47 -2.38 -0.02 1.49 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.45 7.77 -2.39 -0.02 1.43 16 33 H 0.41 10.00 7.98 -92.71 -0.74 9.26 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.00 0.20 7.20 -2.38 -0.02 0.18 16 37 H 0.03 1.11 7.18 -2.39 -0.02 1.10 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.13 2.86 7.73 -2.91 -0.02 2.84 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 43 H 0.11 3.34 8.04 -2.91 -0.02 3.32 16 44 H 0.06 1.68 7.97 -2.39 -0.02 1.66 16 45 H 0.07 1.38 7.77 -2.39 -0.02 1.36 16 46 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.05 0.94 7.93 -2.38 -0.02 0.93 16 50 H 0.09 1.03 7.70 -2.39 -0.02 1.01 16 51 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 Total: -1.00 -73.93 408.97 0.63 -73.30 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.10 Total: 28.17 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 5.13 Total: -29.06 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -6.44 Total: -97.14 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -73.93 0.63 -73.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581019938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.667 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds