Wall clock time and date at job start Tue Mar 31 2020 16:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47516 * 2 1 4 4 C 1.53004 * 109.47158 * 239.99850 * 2 1 3 5 5 C 1.50693 * 109.47083 * 60.00052 * 4 2 1 6 6 H 1.07996 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99766 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46829 * 120.00562 * 9 7 5 12 12 H 1.48499 * 109.47082 * 240.00436 * 9 7 5 13 13 C 1.53007 * 109.46976 * 120.00362 * 2 1 3 14 14 N 1.46503 * 109.46690 * 299.99827 * 13 2 1 15 15 C 1.34780 * 119.99762 * 180.02562 * 14 13 2 16 16 O 1.21580 * 119.99972 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99782 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00002 * 180.02562 * 17 15 14 19 19 H 1.08999 * 115.54981 * 8.50884 * 18 17 15 20 20 C 1.53008 * 117.50030 * 222.80127 * 18 17 15 21 21 C 1.52999 * 60.00024 * 252.51127 * 20 18 17 22 22 C 1.53002 * 117.51370 * 252.52086 * 21 20 18 23 23 C 1.50697 * 117.49845 * 107.48886 * 21 20 18 24 24 C 1.38233 * 119.99927 * 226.10969 * 23 21 20 25 25 C 1.38235 * 120.00232 * 179.79072 * 24 23 21 26 26 C 1.38238 * 119.99398 * 0.46665 * 25 24 23 27 27 C 1.38229 * 120.00212 * 359.76830 * 26 25 24 28 28 C 1.38232 * 119.99967 * 46.39076 * 23 21 20 29 29 H 1.08997 * 109.47310 * 300.00286 * 1 2 3 30 30 H 1.09000 * 109.46680 * 59.99724 * 1 2 3 31 31 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47010 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46874 * 300.00027 * 3 2 1 34 34 H 1.09003 * 109.46791 * 59.99924 * 3 2 1 35 35 H 1.08995 * 109.47299 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.47020 * 300.00310 * 4 2 1 37 37 H 0.97000 * 120.00318 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47340 * 179.97438 * 13 2 1 39 39 H 1.09001 * 109.46855 * 59.99212 * 13 2 1 40 40 H 0.96999 * 119.99922 * 0.27368 * 14 13 2 41 41 H 0.97006 * 120.00228 * 0.02562 * 17 15 14 42 42 H 1.08997 * 117.49547 * 0.02562 * 20 18 17 43 43 H 1.09001 * 117.49863 * 145.01716 * 20 18 17 44 44 H 1.09005 * 109.47184 * 128.63047 * 22 21 20 45 45 H 1.09007 * 109.46889 * 248.62552 * 22 21 20 46 46 H 1.09001 * 109.47472 * 8.62845 * 22 21 20 47 47 H 1.07999 * 120.00455 * 0.02562 * 24 23 21 48 48 H 1.07999 * 120.00688 * 180.25762 * 25 24 23 49 49 H 1.08001 * 119.99802 * 179.79398 * 26 25 24 50 50 H 1.08005 * 120.00344 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00242 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8713 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2492 0.3993 -5.2572 10 1 0.4246 1.5663 -4.8531 11 1 2.4045 0.8660 -6.0650 12 1 0.4243 -0.5338 -6.0660 13 6 2.0400 -0.7214 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6696 16 8 2.5766 -1.4795 3.7811 17 7 1.4279 0.1441 4.7699 18 6 1.7827 -0.3557 6.1005 19 1 2.5259 -1.1528 6.1205 20 6 0.6785 -0.3921 7.1591 21 6 1.7944 0.6504 7.2532 22 6 2.8487 0.4606 8.3456 23 6 1.4403 2.0797 6.9328 24 6 2.2594 2.8262 6.1066 25 6 1.9323 4.1359 5.8092 26 6 0.7910 4.7021 6.3458 27 6 -0.0255 3.9571 7.1759 28 6 0.2993 2.6460 7.4698 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8617 -1.8824 -4.7336 38 1 3.1300 -0.7218 1.2491 39 1 1.6765 -1.7490 1.2492 40 1 0.9907 0.7556 2.3564 41 1 0.8693 0.9322 4.6810 42 1 -0.3119 -0.0444 6.8654 43 1 0.6951 -1.2133 7.8757 44 1 3.8437 0.5168 7.9041 45 1 2.7394 1.2438 9.0959 46 1 2.7141 -0.5138 8.8152 47 1 3.1530 2.3850 5.6904 48 1 2.5700 4.7179 5.1604 49 1 0.5372 5.7264 6.1162 50 1 -0.9169 4.3996 7.5955 51 1 -0.3385 2.0641 8.1186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588367408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:25 Heat of formation + Delta-G solvation = -0.421336 kcal Electronic energy + Delta-G solvation = -28186.370969 eV Core-core repulsion = 24471.614021 eV Total energy + Delta-G solvation = -3714.756947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53974 -39.47382 -37.78541 -36.91191 -33.67534 -33.12435 -31.94526 -31.17558 -30.71648 -28.50507 -27.08236 -26.49562 -26.02543 -23.44157 -23.31827 -22.77750 -21.80830 -20.64421 -19.79824 -18.78285 -17.68200 -17.20574 -16.38973 -16.19409 -15.27914 -15.21147 -15.10110 -14.70835 -14.64196 -14.38589 -13.82531 -13.74520 -13.66330 -13.55824 -13.15687 -13.01766 -12.97892 -12.72884 -12.48134 -12.23005 -12.09256 -12.05946 -11.50334 -11.41379 -11.16926 -11.05448 -10.99799 -10.83111 -10.63207 -10.38661 -10.24869 -10.19702 -10.03915 -9.86247 -9.21138 -9.19342 -9.13649 -8.90594 -8.84720 -8.44183 -8.35387 -5.99254 -4.00346 1.04969 1.12460 2.75760 3.17609 3.30416 3.38544 3.40854 3.49393 3.66811 4.25958 4.30698 4.45960 4.53003 4.59792 4.71531 4.75538 4.86304 4.89234 5.20685 5.29400 5.36402 5.41066 5.48843 5.50609 5.51099 5.53059 5.66178 5.71417 5.76523 5.77146 5.77854 5.88898 6.19717 6.21134 6.23771 6.25914 6.30075 6.34280 6.43149 6.50665 6.61398 6.64524 6.71479 6.81429 7.05942 7.08623 7.09015 7.16946 7.65827 7.78038 7.99753 8.18199 8.41669 8.78929 9.04746 9.62707 11.12285 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.002433 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.719080 B =11507.429757 C =12522.845613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.704 3.296 16 O -0.593 6.593 17 N -0.719 5.719 18 C 0.126 3.874 19 H 0.141 0.859 20 C -0.183 4.183 21 C -0.106 4.106 22 C -0.108 4.108 23 C -0.049 4.049 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.112 4.112 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.395 0.605 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 10.038 25.764 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.024 3.976 14 N -0.390 5.390 15 C 0.404 3.596 16 O -0.471 6.471 17 N -0.373 5.373 18 C 0.018 3.982 19 H 0.159 0.841 20 C -0.221 4.221 21 C -0.108 4.108 22 C -0.165 4.165 23 C -0.049 4.049 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.776 8.988 25.659 27.448 hybrid contribution -0.908 1.243 -1.013 1.843 sum -4.685 10.230 24.645 27.092 Atomic orbital electron populations 1.21751 0.95334 1.01137 1.00115 1.20912 0.95435 0.95859 0.95041 1.21747 1.00516 0.95918 1.00118 1.19094 0.96389 0.95250 0.89441 1.21218 1.31062 1.12019 0.90505 0.92225 1.25017 0.95340 0.95095 0.99083 1.69974 1.37017 1.23065 1.23316 0.86600 0.78597 0.79679 0.83486 1.19820 1.21146 1.21140 1.21498 0.98674 0.95630 0.81812 1.45368 1.55859 1.33309 1.04503 1.15943 0.80354 0.82851 0.80479 1.90905 1.42827 1.27438 1.85913 1.44485 1.56329 1.32687 1.03750 1.21522 1.00260 0.98525 0.77900 0.84135 1.23751 0.95015 1.00605 1.02768 1.20780 1.00846 0.88881 1.00281 1.21296 0.97067 1.01968 0.96213 1.18991 0.95042 0.93384 0.97514 1.21051 0.99580 0.93991 0.97621 1.21199 0.97303 0.95286 0.99872 1.21185 0.95127 0.99957 0.97718 1.21138 0.99722 0.94391 0.98703 1.21020 0.96827 0.95215 0.99914 0.95362 0.91494 0.93360 0.93377 0.91508 0.95343 0.96300 0.96304 0.93101 0.91973 0.92000 0.77183 0.77039 0.88441 0.87685 0.91799 0.91962 0.91779 0.86008 0.85942 0.86164 0.86144 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.37 0.54 -154.50 -0.08 -1.45 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 14 N -0.74 -10.97 4.96 -65.22 -0.32 -11.30 16 15 C 0.70 10.96 8.57 -86.92 -0.74 10.22 16 16 O -0.59 -11.64 15.91 5.30 0.08 -11.55 16 17 N -0.72 -8.38 5.05 -58.67 -0.30 -8.68 16 18 C 0.13 1.30 6.10 -67.93 -0.41 0.89 16 19 H 0.14 1.67 7.39 -51.93 -0.38 1.29 16 20 C -0.18 -1.46 9.43 -26.73 -0.25 -1.71 16 21 C -0.11 -0.87 2.19 -155.66 -0.34 -1.21 16 22 C -0.11 -0.77 9.84 37.16 0.37 -0.40 16 23 C -0.05 -0.42 4.06 -104.63 -0.43 -0.84 16 24 C -0.10 -0.94 9.01 -39.58 -0.36 -1.30 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 28 C -0.11 -0.87 9.34 -39.58 -0.37 -1.24 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.03 0.41 6.87 -51.93 -0.36 0.05 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.39 5.02 6.18 -40.82 -0.25 4.77 16 41 H 0.40 3.99 7.65 -40.82 -0.31 3.68 16 42 H 0.10 0.77 8.01 -51.93 -0.42 0.35 16 43 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 46 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 51 H 0.12 0.80 7.94 -52.49 -0.42 0.38 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -31.39 408.46 -10.88 -42.27 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.51 Total: 6.49 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.71 Total: -13.85 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.12 Total: -45.70 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.39 -10.88 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588367408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.848 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds